View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11183_low_44 (Length: 244)
Name: NF11183_low_44
Description: NF11183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11183_low_44 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 19 - 237
Target Start/End: Original strand, 27556942 - 27557161
Alignment:
| Q |
19 |
catcttcctcattttgcagaaaatccagaaacnnnnnnnnnn-tcaaaactctcgaaacaaatttcaaccaccattaatccattaatgagacatttaaga |
117 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27556942 |
catcttcctcattttgcagaaaatccagaaacaaacaaaaaaatcaaaactctcgaaacaaatttcaaccaccattaatccattaatgagacatttaaga |
27557041 |
T |
|
| Q |
118 |
acaaatactggaagtaagagtagaaggtcaagttagagtcaaaccctctaaatcaaaatcctccgaaaaatgctttccaattaacgcggtgtagatctgc |
217 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
27557042 |
acaaatactgaaagtaagagtagaaggtcaagttagagtcaaaccctctaaatcaaaatcctccgaaaaacgctttccaattaacgcggtgtagatctgc |
27557141 |
T |
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| Q |
218 |
accatacaaatcttcatctc |
237 |
Q |
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|||||||||||||||||||| |
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| T |
27557142 |
accatacaaatcttcatctc |
27557161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 61 - 237
Target Start/End: Complemental strand, 44602472 - 44602296
Alignment:
| Q |
61 |
tcaaaactctcgaaacaaatttcaaccaccattaatccattaatgagacatttaagaacaaatactggaagtaagagtagaaggtcaagttagagtcaaa |
160 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
44602472 |
tcaaaactctcgaaacaaatttcaaccaccattaatccattaatgagacatttaagaacaaatactggaagtaagagtagaaggtcaagttagagccaaa |
44602373 |
T |
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| Q |
161 |
ccctctaaatcaaaatcctccgaaaaatgctttccaattaacgcggtgtagatctgcaccatacaaatcttcatctc |
237 |
Q |
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| T |
44602372 |
ccctctaaatcaagatcctccgaaaaatgctttccaattaacgcggtgtagatctgcaccatacaaatcttcatctc |
44602296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 61 - 237
Target Start/End: Complemental strand, 23103408 - 23103232
Alignment:
| Q |
61 |
tcaaaactctcgaaacaaatttcaaccaccattaatccattaatgagacatttaagaacaaatactggaagtaagagtagaaggtcaagttagagtcaaa |
160 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
23103408 |
tcaaaactctcgaaacaaatttcaaccaccattaatccattaatgagacatttaagaacaaatactggaagtaagagtagaaggtcaagttagagccaaa |
23103309 |
T |
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| Q |
161 |
ccctctaaatcaaaatcctccgaaaaatgctttccaattaacgcggtgtagatctgcaccatacaaatcttcatctc |
237 |
Q |
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||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23103308 |
ccctctaaatcaaaatcctccaaaaaacgctttccaattaacgcggtgtagatctgcaccatacaaatcttcatctc |
23103232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 63 - 237
Target Start/End: Original strand, 45535766 - 45535940
Alignment:
| Q |
63 |
aaaactctcgaaacaaatttcaaccaccattaatccattaatgagacatttaagaacaaatactggaagtaagagtagaaggtcaagttagagtcaaacc |
162 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
45535766 |
aaaactctcgaaacaaatttcaaccaccattaatccattaatgagacatttaagaacaaatactggaagtaagagtagaaggtcaagttaaagccaaacc |
45535865 |
T |
|
| Q |
163 |
ctctaaatcaaaatcctccgaaaaatgctttccaattaacgcggtgtagatctgcaccatacaaatcttcatctc |
237 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45535866 |
ctctaaatcaaaatcctccgaaaaacgctttccaattaacgcggtgtagatctgcaccatacaaatcttcatctc |
45535940 |
T |
|
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