View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11183_low_45 (Length: 242)
Name: NF11183_low_45
Description: NF11183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11183_low_45 |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 22 - 232
Target Start/End: Original strand, 16908528 - 16908738
Alignment:
| Q |
22 |
caactgccacaccaatcttgaacacatcaaccaacaatctctcattgaaaaactgttcagcaaataatggccaagtagccaatggtaaacctgcatttac |
121 |
Q |
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| T |
16908528 |
caactgccacaccaatcttcaacacatcaaccaacaatctctcattgaaaaactgttcagcaaacaatggccaagtagccaatggtaaacctgcatttac |
16908627 |
T |
|
| Q |
122 |
actttccataatagtgttccacccacaatgagtcaccacagctccaactgcaccatgctctagtatcagaagctgtggtgcccaaccccatatcaaatag |
221 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16908628 |
actttccataatagtgttccacccacaatgagtcacaacagctccaactgcaccatgctctagtatcagaagctgtggtgcccaaccccatatcaaatag |
16908727 |
T |
|
| Q |
222 |
cctttgcttct |
232 |
Q |
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|||||| |||| |
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| T |
16908728 |
cctttgtttct |
16908738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 22 - 227
Target Start/End: Complemental strand, 14870131 - 14869926
Alignment:
| Q |
22 |
caactgccacaccaatcttgaacacatcaaccaacaatctctcattgaaaaactgttcagcaaataatggccaagtagccaatggtaaacctgcatttac |
121 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||| |
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| T |
14870131 |
caactgccacaccaatcttcaacacatcaaccaacaatctctcattgaaaaactgttcagcaaacaatggccaagttgccaatgacaaacctgcatttac |
14870032 |
T |
|
| Q |
122 |
actttccataatagtgttccacccacaatgagtcaccacagctccaactgcaccatgctctagtatcagaagctgtggtgcccaaccccatatcaaatag |
221 |
Q |
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| T |
14870031 |
actttccataatagtgttccagccacagtgagtcaccactgctccaactgcagcatgctctagtatcagcagttgtggtgcccaaccccatatcaaatag |
14869932 |
T |
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| Q |
222 |
cctttg |
227 |
Q |
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|||||| |
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| T |
14869931 |
cctttg |
14869926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 30 - 226
Target Start/End: Original strand, 5994783 - 5994979
Alignment:
| Q |
30 |
acaccaatcttgaacacatcaaccaacaatctctcattgaaaaactgttcagcaaataatggccaagtagccaatggtaaacctgcatttacactttcca |
129 |
Q |
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|||||||| || ||||||||||| | | | ||||||||||||| |||||||||||||| ||||| || | |||||| || |||| |||||||| | |
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| T |
5994783 |
acaccaattttcaacacatcaactacaagtttctcattgaaaaaatgttcagcaaataaaggccatgtcactgttggtaacccaacattcacactttcaa |
5994882 |
T |
|
| Q |
130 |
taatagtgttccacccacaatgagtcaccacagctccaactgcaccatgctctagtatcagaagctgtggtgcccaaccccatatcaaatagccttt |
226 |
Q |
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| T |
5994883 |
caacagtgttccaaccacaatgactcactaaccctccaattgcatgattctcaagtatcaaaagctgtggtgcccatccccaaatcaaatagccttt |
5994979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 97
Target Start/End: Complemental strand, 12613833 - 12613769
Alignment:
| Q |
33 |
ccaatcttgaacacatcaaccaacaatctctcattgaaaaactgttcagcaaataatggccaagt |
97 |
Q |
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||||| || ||||| ||||||| |||| |||||| ||||| |||||||||||||| |||||||| |
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| T |
12613833 |
ccaatttttaacacttcaaccaccaatttctcatgaaaaaattgttcagcaaataaaggccaagt |
12613769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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