View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11183_low_46 (Length: 241)
Name: NF11183_low_46
Description: NF11183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11183_low_46 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 19409615 - 19409391
Alignment:
| Q |
1 |
cttcaagagcatcaattttgatattctattactatgcgcatcataggagtattgtttttatattactatgcacatcacagtggagtattacttttatgca |
100 |
Q |
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| T |
19409615 |
cttcaagagcatcaattttgattttctattactatgcgcatcataggagtattgtttttatattactatgcacatcacagtggagtattacttttatgca |
19409516 |
T |
|
| Q |
101 |
tggaaggaataagactataaacacatgcttgcaagtttcttctactgtcaatgtaaaacgaaaataaaagaagaccatggttctaatgtaaaacgaagat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
19409515 |
tggaaggaataagactataaacacatgcttgcaagtttcttctactgtcaatgtaaaacgaaaataaaagaaggccatggttctaatgtaaaacgaagat |
19409416 |
T |
|
| Q |
201 |
aaatttggataaaaggttcatgatg |
225 |
Q |
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||||||| ||||||||||||||||| |
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| T |
19409415 |
aaatttgcataaaaggttcatgatg |
19409391 |
T |
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