View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11183_low_47 (Length: 240)

Name: NF11183_low_47
Description: NF11183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11183_low_47
NF11183_low_47
[»] chr7 (9 HSPs)
chr7 (1-159)||(29279160-29279318)
chr7 (3-213)||(29269706-29269916)
chr7 (49-159)||(29275327-29275437)
chr7 (1-215)||(29287541-29287751)
chr7 (5-217)||(29282081-29282293)
chr7 (5-115)||(28612931-28613041)
chr7 (1-123)||(28621251-28621373)
chr7 (2-123)||(28614653-28614773)
chr7 (82-146)||(29286976-29287040)
[»] chr1 (3 HSPs)
chr1 (10-145)||(4235404-4235539)
chr1 (10-145)||(49144997-49145132)
chr1 (24-147)||(49149542-49149665)
[»] chr5 (1 HSPs)
chr5 (16-109)||(35625842-35625935)


Alignment Details
Target: chr7 (Bit Score: 123; Significance: 3e-63; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 29279318 - 29279160
Alignment:
Q  1 ttaatcctaaattgatgatttttatggttaagctttgcaactgaaagccaagtcttgcacaccacacgaaacctaacatgatctatgtgttcttccaact 100  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| |||| |||| |||||||||| ||||||||||||||||||||||||||||||||    
T  29279318 ttaatcctaaattgatgatttttatggttaagcgttgcaactgaaaaccaattcttacacaccacaccaaacctaacatgatctatgtgttcttccaact 29279219  T
Q  101 tatcaagaaccaaactaagaggataggcttctaaatttgcccaatctaccttcctcatt 159  Q
    |||||||||| |||||||||||||| |||||||||||| ||||||| ||||||||||||    
T  29279218 tatcaagaacaaaactaagaggatatgcttctaaattttcccaatcaaccttcctcatt 29279160  T

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Target: chr7; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 3 - 213
Target Start/End: Complemental strand, 29269916 - 29269706
Alignment:
Q  3 aatcctaaattgatgatttttatggttaagctttgcaactgaaagccaagtcttgcacaccacacgaaacctaacatgatctatgtgttcttccaactta 102  Q
    |||||||||||||||||||||||||||||||||||||| ||| || ||| ||||||||||||||| ||||||||||||||||||||||||||||||||      
T  29269916 aatcctaaattgatgatttttatggttaagctttgcaattgataggcaactcttgcacaccacaccaaacctaacatgatctatgtgttcttccaactcg 29269817  T
Q  103 tcaagaaccaaactaagaggataggcttctaaatttgcccaatctaccttcctcatttctaggtgagagtgtttaatcgataaaatagaactgaccggta 202  Q
    |||||||||||||||||||| |||   |||||||||| |||||||||||| |||||| | | || | ||| |||||| ||| || ||||||||||||||     
T  29269816 tcaagaaccaaactaagagggtagcaatctaaatttgaccaatctacctttctcattgccaagtaaaagtctttaattgatgaagtagaactgaccggtg 29269717  T
Q  203 gagtaattgaa 213  Q
     ||||||||||    
T  29269716 aagtaattgaa 29269706  T

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Target: chr7; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 49 - 159
Target Start/End: Complemental strand, 29275437 - 29275327
Alignment:
Q  49 caagtcttgcacaccacacgaaacctaacatgatctatgtgttcttccaacttatcaagaaccaaactaagaggataggcttctaaatttgcccaatcta 148  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||| |    
T  29275437 caagtcttgcacactacacgaaacctaacatgatctatgtgttcttccaacttatcaagaaccaaactaagaggagaggattctaaattttcccaatcaa 29275338  T
Q  149 ccttcctcatt 159  Q
    |||||||||||    
T  29275337 ccttcctcatt 29275327  T

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Target: chr7; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 29287751 - 29287541
Alignment:
Q  1 ttaatcctaaattgatgatttttatggttaagctttgcaactgaaagccaagtcttgcacaccacacgaaacctaacatgatctatgtgttcttccaact 100  Q
    ||||||||||||||||||||||||||||||||||| |||| ||| |||||| |||| |||||||||| |||||||||||  ||| | ||| |||||||||    
T  29287751 ttaatcctaaattgatgatttttatggttaagcttagcaattgatagccaattcttacacaccacaccaaacctaacatagtctgtttgtacttccaact 29287652  T
Q  101 tatcaagaaccaaactaagaggataggcttctaaatttgcccaatctaccttcctcatttctaggtgagagtgtttaatcgataaaatagaactgaccgg 200  Q
    | |||||||||||||||||||||    || ||||||||||||||||||| ||| ||||| |||    ||||  || ||| |||||| |||||||||| ||    
T  29287651 tttcaagaaccaaactaagaggaagtcctcctaaatttgcccaatctacattcgtcattgcta----agagccttgaattgataaagtagaactgactgg 29287556  T
Q  201 tagagtaattgaagg 215  Q
    | |||||||||||||    
T  29287555 tggagtaattgaagg 29287541  T

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Target: chr7; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 5 - 217
Target Start/End: Complemental strand, 29282293 - 29282081
Alignment:
Q  5 tcctaaattgatgatttttatggttaagctttgcaactgaaagccaagtcttgcacaccacacgaaacctaacatgatctatgtgttcttccaacttatc 104  Q
    ||||||||||||||||||||||||||||||| ||| |||| |||||| |||| ||||| ||||  ||||||||||  ||| | ||| |||||||||| ||    
T  29282293 tcctaaattgatgatttttatggttaagcttagcagctgatagccaattcttacacacaacaccgaacctaacatagtctgtttgtacttccaacttttc 29282194  T
Q  105 aagaaccaaactaagaggataggcttctaaatttgcccaatctaccttcctcatttctaggtgagagtgtttaatcgataaaatagaactgaccggtaga 204  Q
    |||||||||||||||||||    | | ||||||||||||||| |||||||||||| ||| || ||||  || | | |||||| |||||||||| ||| ||    
T  29282193 aagaaccaaactaagaggaagttcatttaaatttgcccaatcaaccttcctcattgctaagtaagagccttgacttgataaagtagaactgactggtgga 29282094  T
Q  205 gtaattgaaggca 217  Q
    |||| ||||||||    
T  29282093 gtaactgaaggca 29282081  T

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Target: chr7; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 5 - 115
Target Start/End: Original strand, 28612931 - 28613041
Alignment:
Q  5 tcctaaattgatgatttttatggttaagctttgcaactgaaagccaagtcttgcacaccacacgaaacctaacatgatctatgtgttcttccaacttatc 104  Q
    |||||||||||||  ||| ||||||||||||||||||||| ||||||||||||||||| |||  ||||||||||||||||||||||||||||||||| ||    
T  28612931 tcctaaattgatggctttgatggttaagctttgcaactgatagccaagtcttgcacacgacagcaaacctaacatgatctatgtgttcttccaacttgtc 28613030  T
Q  105 aagaaccaaac 115  Q
    |||||||||||    
T  28613031 aagaaccaaac 28613041  T

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Target: chr7; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 28621373 - 28621251
Alignment:
Q  1 ttaatcctaaattgatgatttttatggttaagctttgcaactgaaagccaagtcttgcacaccacacgaaacctaacatgatctatgtgttcttccaact 100  Q
    ||||| |||||||||||||||| |||||| | ||||||||||||| ||||| | |||||||| |||| ||||||||||||||| |||||||||||||| |    
T  28621373 ttaatgctaaattgatgattttgatggttcaactttgcaactgaacgccaatttttgcacacgacaccaaacctaacatgatcgatgtgttcttccaatt 28621274  T
Q  101 tatcaagaaccaaactaagagga 123  Q
    | |||||||||||||||||||||    
T  28621273 tgtcaagaaccaaactaagagga 28621251  T

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Target: chr7; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 2 - 123
Target Start/End: Complemental strand, 28614773 - 28614653
Alignment:
Q  2 taatcctaaattgatgatttttatggttaagctttgcaactgaaagccaagtcttgcacaccacacgaaacctaacatgatctatgtgttcttccaactt 101  Q
    ||||| |||||||||| |||| |||||||||||||||||||||  |||||||||||||||| ||||  |||||||||||||||||||||||||| |||||    
T  28614773 taatcataaattgatggttttgatggttaagctttgcaactgatcgccaagtcttgcacacgacactgaacctaacatgatctatgtgttcttctaactt 28614674  T
Q  102 atcaagaaccaaactaagagga 123  Q
      ||||||||||| ||||||||    
T  28614673 -gcaagaaccaaattaagagga 28614653  T

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Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 82 - 146
Target Start/End: Complemental strand, 29287040 - 29286976
Alignment:
Q  82 tctatgtgttcttccaacttatcaagaaccaaactaagaggataggcttctaaatttgcccaatc 146  Q
    |||||||||||||||||||| ||||| |||||||| ||||| |||  ||||||||||||||||||    
T  29287040 tctatgtgttcttccaacttgtcaagcaccaaactgagagggtagcattctaaatttgcccaatc 29286976  T

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Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 10 - 145
Target Start/End: Complemental strand, 4235539 - 4235404
Alignment:
Q  10 aattgatgatttttatggttaagctttgcaactgaaagccaagtcttgcacaccacacgaaacctaacatgatctatgtgttcttccaacttatcaagaa 109  Q
    ||||||||||||| |||||||| |||||||| |||  ||||| ||||||||||  ||| ||||| |||||||| |||||||||||| ||||| ||||| |    
T  4235539 aattgatgattttgatggttaaactttgcaattgatcgccaactcttgcacacagcaccaaaccaaacatgatatatgtgttcttctaacttgtcaagta 4235440  T
Q  110 ccaaactaagaggataggcttctaaatttgcccaat 145  Q
     |||||||||||||   |||||||||||||||||||    
T  4235439 tcaaactaagaggaagtgcttctaaatttgcccaat 4235404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 10 - 145
Target Start/End: Complemental strand, 49145132 - 49144997
Alignment:
Q  10 aattgatgatttttatggttaagctttgcaactgaaagccaagtcttgcacaccacacgaaacctaacatgatctatgtgttcttccaacttatcaagaa 109  Q
    ||||||||||||| |||| ||| |||||||| |||  ||||||||||||||||  ||| ||||  ||||| ||||||||||||||| ||||| |||||||    
T  49145132 aattgatgattttgatggctaaactttgcaattgatcgccaagtcttgcacacagcaccaaacgaaacataatctatgtgttcttctaacttgtcaagaa 49145033  T
Q  110 ccaaactaagaggataggcttctaaatttgcccaat 145  Q
     |||| |||||| |  ||||||||||||||||||||    
T  49145032 tcaaattaagagcaagggcttctaaatttgcccaat 49144997  T

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Target: chr1; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 24 - 147
Target Start/End: Complemental strand, 49149665 - 49149542
Alignment:
Q  24 atggttaagctttgcaactgaaagccaagtcttgcacaccacacgaaacctaacatgatctatgtgttcttccaacttatcaagaaccaaactaagagga 123  Q
    ||||||||||||||||| |||  ||||| ||||||||||  ||| ||||| ||||||||||||||||||||| ||| | ||||||||||||| |||||||    
T  49149665 atggttaagctttgcaattgatcgccaactcttgcacacagcaccaaaccaaacatgatctatgtgttcttctaacatgtcaagaaccaaaccaagagga 49149566  T
Q  124 taggcttctaaatttgcccaatct 147  Q
       ||| |||||||| ||||||||    
T  49149565 attgctcctaaatttacccaatct 49149542  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 35625842 - 35625935
Alignment:
Q  16 tgatttttatggttaagctttgcaactgaaagccaagtcttgcacaccacacgaaacctaacatgatctatgtgttcttccaacttatcaagaa 109  Q
    ||||||| |||||||| |||||||| |||  ||||  ||||||||||  |||  |||| ||||||||||||  ||||||| ||||| |||||||    
T  35625842 tgattttgatggttaaactttgcaattgatcgccagttcttgcacacggcaccgaaccaaacatgatctattcgttcttctaacttgtcaagaa 35625935  T

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