View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11183_low_50 (Length: 239)
Name: NF11183_low_50
Description: NF11183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11183_low_50 |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 13 - 227
Target Start/End: Original strand, 4743187 - 4743400
Alignment:
| Q |
13 |
agcagagacaaacagtgatgaattgattaatttagagttggaagataaattagatgtaaatcagacaactgttaaaactgcaaggtacaaaccattacca |
112 |
Q |
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| T |
4743187 |
agcagaaacaaacagtgatgaattgattaatttagagttggaagataaattagatgtaaatgagacaactgttaaaactgcaagatacaaaccattacca |
4743286 |
T |
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| Q |
113 |
aagcaactaccaaaaagggatgtctcagaactttaaatattcgatctctttatgatattgaaaatagtagtagagtaaaaataagagaatctatggtgga |
212 |
Q |
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| T |
4743287 |
a-gcaactaccagaaagggatgtctcagaactttaaatattcgatctctttatgatattgaaaatagtagtagagtaaaaataagagaatctatggtgga |
4743385 |
T |
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| Q |
213 |
agatttgaataattt |
227 |
Q |
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||||||||||||||| |
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| T |
4743386 |
agatttgaataattt |
4743400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 13 - 227
Target Start/End: Original strand, 4182343 - 4182556
Alignment:
| Q |
13 |
agcagagacaaacagtgatgaattgattaatttagagttggaagataaattagatgtaaatcagacaactgttaaaactgcaaggtacaaaccattacca |
112 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
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| T |
4182343 |
agcagaaacaaacagtgatgaattgattaatttagagttggaagataaattagatgtaaatgagacaactgttaaaactgcaagatacaaaccattacca |
4182442 |
T |
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| Q |
113 |
aagcaactaccaaaaagggatgtctcagaactttaaatattcgatctctttatgatattgaaaatagtagtagagtaaaaataagagaatctatggtgga |
212 |
Q |
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| |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4182443 |
a-gcaactaccagaaagggatgtctcagaactttaaatattcgatctctatatgatattgaaaatagtagtagagtaaaaataagagaatctatggtgga |
4182541 |
T |
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| Q |
213 |
agatttgaataattt |
227 |
Q |
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||||||||||||||| |
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| T |
4182542 |
agatttgaataattt |
4182556 |
T |
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Back To:
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