View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11183_low_55 (Length: 230)
Name: NF11183_low_55
Description: NF11183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11183_low_55 |
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Alignment Details
Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 76 - 211
Target Start/End: Complemental strand, 45363087 - 45362952
Alignment:
| Q |
76 |
taaacaccattgagtttgattgaatactaaccaagactgtacatggccatgccaagccctgcatctgacaatatggaaatagacttttctatgataacag |
175 |
Q |
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| T |
45363087 |
taaacaccattgagttttattgaatactaaccaagactgaacatggccatgccaagccctgcatccgacaatatggaaatagactttgctatgataacag |
45362988 |
T |
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| Q |
176 |
gcatttcaatattccacctgaatgaaatgagtgacc |
211 |
Q |
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| T |
45362987 |
gcatttcaatattccacctgaatgaaatgagtgacc |
45362952 |
T |
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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 45
Target Start/End: Complemental strand, 45363267 - 45363237
Alignment:
| Q |
15 |
atgaacagaatcataaaggaaaaggagcaaa |
45 |
Q |
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| T |
45363267 |
atgaacagaatcataaaggaaaaggagcaaa |
45363237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 105 - 187
Target Start/End: Complemental strand, 25040782 - 25040700
Alignment:
| Q |
105 |
accaagactgtacatggccatgccaagccctgcatctgacaatatggaaatagacttttctatgataacaggcatttcaatat |
187 |
Q |
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|||||||||| |||| ||||||||||| ||||||||||||| ||||||||||||||| |||| || ||||||||||||||| |
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| T |
25040782 |
accaagactgaacatagccatgccaagtcctgcatctgacagaatggaaatagactttgctataatggcaggcatttcaatat |
25040700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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