View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11183_low_57 (Length: 225)

Name: NF11183_low_57
Description: NF11183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11183_low_57
NF11183_low_57
[»] chr5 (2 HSPs)
chr5 (1-201)||(19409799-19410000)
chr5 (21-101)||(42133569-42133649)
[»] chr6 (3 HSPs)
chr6 (17-201)||(28294609-28294794)
chr6 (17-201)||(28517279-28517464)
chr6 (1-165)||(28522113-28522278)
[»] chr1 (2 HSPs)
chr1 (1-164)||(14507034-14507198)
chr1 (158-201)||(47705127-47705170)
[»] chr8 (4 HSPs)
chr8 (19-101)||(21032085-21032167)
chr8 (21-101)||(19873846-19873926)
chr8 (140-201)||(19873773-19873835)
chr8 (190-225)||(8841018-8841053)
[»] chr7 (4 HSPs)
chr7 (21-101)||(18484119-18484199)
chr7 (21-101)||(18479285-18479365)
chr7 (131-201)||(18479366-18479437)
chr7 (158-201)||(38845048-38845091)
[»] scaffold0933 (1 HSPs)
scaffold0933 (18-101)||(3896-3979)
[»] scaffold1939 (1 HSPs)
scaffold1939 (33-101)||(1155-1223)
[»] chr3 (1 HSPs)
chr3 (157-198)||(17477274-17477315)
[»] chr4 (1 HSPs)
chr4 (196-224)||(40786366-40786394)


Alignment Details
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 19409799 - 19410000
Alignment:
Q  1 ctcttaattttcataggatgaaaagagtgcagtacaatgatatttatacaagtaagggaaagtatgctaagtaccgtgaactagcaactagagaattgct 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  19409799 ctcttaattctcataggatgaaaagagtgcagtacaatgatatttatacaagtgagggaaagtatgctaagtaccgtgaactagaaactagagaattgct 19409898  T
Q  101 att-tactggataacttgctccacaagttatctcttataataaagctaaaacataaaatgtaatagtcccccttaagttggaggtttgtatatatcaact 199  Q
    | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  19409899 actctactggataacttgctccacaagttatctcttataataaagctaaaacataaaatgtaatagtccccctcaagttggagctttgtatatatcaact 19409998  T
Q  200 aa 201  Q
    ||    
T  19409999 aa 19410000  T

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Target: chr5; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 21 - 101
Target Start/End: Complemental strand, 42133649 - 42133569
Alignment:
Q  21 aaaagagtgcagtacaatgatatttatacaagtaagggaaagtatgctaagtaccgtgaactagcaactagagaattgcta 101  Q
    |||||||| |||||||||| |||||||||||   |||||||||||||||||||| ||||||||||| ||||||||||||||    
T  42133649 aaaagagtacagtacaatggtatttatacaaaagagggaaagtatgctaagtactgtgaactagcagctagagaattgcta 42133569  T

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Target: chr6 (Bit Score: 138; Significance: 3e-72; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 17 - 201
Target Start/End: Complemental strand, 28294794 - 28294609
Alignment:
Q  17 gatgaaaagagtgcagtacaatgatatttatacaagtaagggaaagtatgctaagtaccgtgaactagcaactagagaattgctatt-tactggataact 115  Q
    ||||||||||||| |||||||||||||||||||||   |||||||||||||||||||| |||||||||||||||||||||||||| | |||| |||||||    
T  28294794 gatgaaaagagtgtagtacaatgatatttatacaatagagggaaagtatgctaagtactgtgaactagcaactagagaattgctactctactagataact 28294695  T
Q  116 tgctccacaagttatctcttataataaagctaaaacataaaatgtaatagtcccccttaagttggaggtttgtatatatcaactaa 201  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  28294694 tgctccacaagttatctctaatagtaaagctaaaacataaaatgtaatagtccccctcaagttggaggtttgtatatatcaactaa 28294609  T

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Target: chr6; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 17 - 201
Target Start/End: Original strand, 28517279 - 28517464
Alignment:
Q  17 gatgaaaagagtgcagtacaatgatatttatacaagtaagggaaagtatgctaagtaccgtgaactagcaactagagaattgctatt-tactggataact 115  Q
    ||||||||||||| |||||||||||||||||||||   |||||||||||||||||||| |||||||||||||||||||||||||| | |||| |||||||    
T  28517279 gatgaaaagagtgtagtacaatgatatttatacaatagagggaaagtatgctaagtactgtgaactagcaactagagaattgctactctactagataact 28517378  T
Q  116 tgctccacaagttatctcttataataaagctaaaacataaaatgtaatagtcccccttaagttggaggtttgtatatatcaactaa 201  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  28517379 tgctccacaagttatctctaatagtaaagctaaaacataaaatgtaatagtccccctcaagttggaggtttgtatatatcaactaa 28517464  T

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Target: chr6; HSP #3
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 28522113 - 28522278
Alignment:
Q  1 ctcttaattttcataggatgaaaagagtgcagtacaatgatatttatacaagtaagggaaagtatgctaagtaccgtgaactagcaactagagaattgct 100  Q
    ||||||||| ||||  ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||| |||||||||||||||    
T  28522113 ctcttaattctcattagatgaaaagagtgcagtacaatgatatttatacaaatgagggaaagtatgctaagtactgtgaactagaaactagagaattgct 28522212  T
Q  101 a-tttactggataacttgctccacaagttatctcttataataaagctaaaacataaaatgtaatag 165  Q
    | | ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  28522213 actctactggataacttgctccacaagttatctctaatagtaaagctaaaacataaaatgtaatag 28522278  T

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Target: chr1 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 14507034 - 14507198
Alignment:
Q  1 ctcttaattttcataggatgaaaagagtgcagtacaatgatatttatacaagtaagggaaagtatgctaagtaccgtgaactagcaactagagaattgct 100  Q
    ||||||||| ||||  |||||||||||| |||||||||||||||||||||||  |||||||||||||||| ||| |||||||||||||||||||||||||    
T  14507034 ctcttaattctcattagatgaaaagagtacagtacaatgatatttatacaagagagggaaagtatgctaaatactgtgaactagcaactagagaattgct 14507133  T
Q  101 a-tttactggataacttgctccacaagttatctcttataataaagctaaaacataaaatgtaata 164  Q
    | | ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  14507134 actctactggataacttgctccacaagttatctctaatagtaaagctaaaacataaaatgtaata 14507198  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 158 - 201
Target Start/End: Original strand, 47705127 - 47705170
Alignment:
Q  158 tgtaatagtcccccttaagttggaggtttgtatatatcaactaa 201  Q
    ||||||||||||||| ||||||||||||||||||||||||||||    
T  47705127 tgtaatagtccccctcaagttggaggtttgtatatatcaactaa 47705170  T

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Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 21032085 - 21032167
Alignment:
Q  19 tgaaaagagtgcagtacaatgatatttatacaagtaagggaaagtatgctaagtaccgtgaactagcaactagagaattgcta 101  Q
    |||||||||| |||||||||| |||||||||||   |||||||||||||||||||| ||||||||||||||||||||||||||    
T  21032085 tgaaaagagtacagtacaatggtatttatacaaaagagggaaagtatgctaagtactgtgaactagcaactagagaattgcta 21032167  T

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Target: chr8; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 21 - 101
Target Start/End: Complemental strand, 19873926 - 19873846
Alignment:
Q  21 aaaagagtgcagtacaatgatatttatacaagtaagggaaagtatgctaagtaccgtgaactagcaactagagaattgcta 101  Q
    |||||||| |||||||||| |||||||||||   |||||||||||||||||||| ||||||||||||||||||||||||||    
T  19873926 aaaagagtacagtacaatggtatttatacaaaagagggaaagtatgctaagtactgtgaactagcaactagagaattgcta 19873846  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 201
Target Start/End: Complemental strand, 19873835 - 19873773
Alignment:
Q  140 taaagctaaaacataaaatgtaatagtccccctt-aagttggaggtttgtatatatcaactaa 201  Q
    |||||||||||||| ||| ||||||||||||| | ||||||||||||||||||||||||||||    
T  19873835 taaagctaaaacatgaaaagtaatagtcccccctcaagttggaggtttgtatatatcaactaa 19873773  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 225
Target Start/End: Original strand, 8841018 - 8841053
Alignment:
Q  190 tatatcaactaagagaaatgatatttgtacaaccac 225  Q
    |||||||| |||||||||||||||||||||||||||    
T  8841018 tatatcaaataagagaaatgatatttgtacaaccac 8841053  T

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Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 21 - 101
Target Start/End: Original strand, 18484119 - 18484199
Alignment:
Q  21 aaaagagtgcagtacaatgatatttatacaagtaagggaaagtatgctaagtaccgtgaactagcaactagagaattgcta 101  Q
    |||||||| |||||||||| |||||||||||   |||||||||||||||||||| ||||||||||||||||||||||||||    
T  18484119 aaaagagtacagtacaatggtatttatacaaaagagggaaagtatgctaagtactgtgaactagcaactagagaattgcta 18484199  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 21 - 101
Target Start/End: Original strand, 18479285 - 18479365
Alignment:
Q  21 aaaagagtgcagtacaatgatatttatacaagtaagggaaagtatgctaagtaccgtgaactagcaactagagaattgcta 101  Q
    |||||||| |||||||||| |||||||||||   ||| |||||||||||||||| ||||||||||||||||||||||||||    
T  18479285 aaaagagtacagtacaatggtatttatacaaaagaggaaaagtatgctaagtactgtgaactagcaactagagaattgcta 18479365  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 131 - 201
Target Start/End: Original strand, 18479366 - 18479437
Alignment:
Q  131 ctcttataataaagctaaaa-cataaaatgtaatagtcccccttaagttggaggtttgtatatatcaactaa 201  Q
    |||| ||| ||||||||||| ||| ||| |||||||||||||| ||||||||||||||| ||||||||||||    
T  18479366 ctctaatagtaaagctaaaaacatgaaaagtaatagtccccctcaagttggaggtttgtgtatatcaactaa 18479437  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 158 - 201
Target Start/End: Original strand, 38845048 - 38845091
Alignment:
Q  158 tgtaatagtcccccttaagttggaggtttgtatatatcaactaa 201  Q
    ||||||||||||||| ||||||||||||||||||||||||||||    
T  38845048 tgtaatagtccccctcaagttggaggtttgtatatatcaactaa 38845091  T

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Target: scaffold0933 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0933
Description:

Target: scaffold0933; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 3979 - 3896
Alignment:
Q  18 atgaaaagagtgcagtacaatgatatttatacaagtaagggaaagtatgctaagtaccgtgaactagcaactagagaattgcta 101  Q
    ||||||||||| |||||||||| |||||||| ||   |||||||||||||||| ||| ||||||||||||||||||||||||||    
T  3979 atgaaaagagtacagtacaatggtatttatataaaagagggaaagtatgctaattactgtgaactagcaactagagaattgcta 3896  T

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Target: scaffold1939 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold1939
Description:

Target: scaffold1939; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 33 - 101
Target Start/End: Complemental strand, 1223 - 1155
Alignment:
Q  33 tacaatgatatttatacaagtaagggaaagtatgctaagtaccgtgaactagcaactagagaattgcta 101  Q
    ||||||| |||||||||||   |||||||||||||||||||| ||||||||||| ||||||||||||||    
T  1223 tacaatggtatttatacaaaagagggaaagtatgctaagtactgtgaactagcagctagagaattgcta 1155  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 198
Target Start/End: Original strand, 17477274 - 17477315
Alignment:
Q  157 atgtaatagtcccccttaagttggaggtttgtatatatcaac 198  Q
    |||||||||||||||| ||||||||||||||||| |||||||    
T  17477274 atgtaatagtccccctcaagttggaggtttgtatgtatcaac 17477315  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Complemental strand, 40786394 - 40786366
Alignment:
Q  196 aactaagagaaatgatatttgtacaacca 224  Q
    |||||||||||||||||||||||||||||    
T  40786394 aactaagagaaatgatatttgtacaacca 40786366  T

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