View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11183_low_6 (Length: 643)
Name: NF11183_low_6
Description: NF11183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11183_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 16 - 365
Target Start/End: Original strand, 19094784 - 19095131
Alignment:
| Q |
16 |
catctctcttcatgatggcatgatgcgtggctcataacacgctttgcattttaagtattggttgtccatcttgaatccccttctgattgcacaacatgtg |
115 |
Q |
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| T |
19094784 |
catctctcttcatgatggcatgatgcgtggctcataacacgctttgcattttaagtattggttgtccatcttgaatccccttctgattgcacaacatgtg |
19094883 |
T |
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| Q |
116 |
gcttgtagcatgcatcacgcttcttcctgtggctgactcatctataattcttctttccttatcccatttcgcctcatcgaaacattcatagtgattatat |
215 |
Q |
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| T |
19094884 |
gcttgtagcatgcatcactcttcttctagtggctgactcatctataattcttctttccttatcccattttgcctcatcgaaacgttcatagtgattatat |
19094983 |
T |
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| Q |
216 |
atgctaagaaatcacttttaatattcttgtcaaaagtataacacacgaccacgaaattgtctagtttgaatgatttgacatgtttcaaggtcttgttttc |
315 |
Q |
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| T |
19094984 |
atcctaagaaatcacttttaatattcttgtcaaaagtata--acacgaccacgaaattgtctagtttgaatgatttgacatgtttcaaggtcttgttttc |
19095081 |
T |
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| Q |
316 |
atttttcttgtcccttgcgtgtccattggtttatttacaaatactcaacc |
365 |
Q |
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| T |
19095082 |
atttttcttgtcccttgcgtgtccattggtttatttacaaatactcaacc |
19095131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 392 - 632
Target Start/End: Original strand, 19095164 - 19095404
Alignment:
| Q |
392 |
aagatttaaaactatctcctaaatgatgctaaaacaactatatgacaaactattatctaatctccatagttgaactttttccttgtctttaagcaacgaa |
491 |
Q |
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| T |
19095164 |
aagatttaaaactatctcctaaatgaagctaaaacaactatatgacaaactatcatctaagctccatagttgaaatttttccttgtctttaagcaacgaa |
19095263 |
T |
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| Q |
492 |
cttgtaaaatagaattctacaacaaaataacaagtctcactgaaatataagaacaataaaaattctttacctgatctggtaatggatcatcgacatttga |
591 |
Q |
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| T |
19095264 |
cttgtaaaatagaattctacaacaaaataacaagtctcactgaaatataagaacaataaaaattctttacctgatctggtaatggaccaccgacatttga |
19095363 |
T |
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| Q |
592 |
tgcattcttttacttaaagactctgattctccagacttcat |
632 |
Q |
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| T |
19095364 |
tgcattcttttacttaaagactctgattctccagacttcat |
19095404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 124 - 197
Target Start/End: Complemental strand, 9830135 - 9830062
Alignment:
| Q |
124 |
catgcatcacgcttcttcctgtggctgactcatctataattcttctttccttatcccatttcgcctcatcgaaa |
197 |
Q |
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| T |
9830135 |
catgcatcacgcttcttccaatggttgactcatttgtgatgcttcattccttatcgcatttcgcctcaccgaaa |
9830062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 270 - 306
Target Start/End: Complemental strand, 23055241 - 23055205
Alignment:
| Q |
270 |
aattgtctagtttgaatgatttgacatgtttcaaggt |
306 |
Q |
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| T |
23055241 |
aattatctggtttgaatgatttgacatgtttcaaggt |
23055205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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