View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11183_low_60 (Length: 209)
Name: NF11183_low_60
Description: NF11183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11183_low_60 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 5e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 20 - 194
Target Start/End: Original strand, 8460679 - 8460853
Alignment:
| Q |
20 |
attcatagcagatcacctattaggattctggaggccaagcacaacgtttactctgcaatcattggggagaaagtgtgcatgaagattggagatggttcat |
119 |
Q |
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| T |
8460679 |
attcatagcagatcacctattaggattctggaggccaagcacaacgtttactctgcaatcattggggagaaagtgtgcatgaagattggagatggttcat |
8460778 |
T |
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| Q |
120 |
ggagcccatctgggagggaatggacactctcaacatgtggctataactatgctgtatggcacaattagtgttcat |
194 |
Q |
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| T |
8460779 |
ggagcccatctgggagggaatggacactctcaacatgtggctataactatgctgtatggcacaagtagtgttcat |
8460853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 99 - 194
Target Start/End: Original strand, 12950893 - 12950986
Alignment:
| Q |
99 |
tgaagattggagatggttcatggagcccatctgggagggaatggacactctcaacatgtggctataactatgctgtatggcacaattagtgttcat |
194 |
Q |
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| T |
12950893 |
tgaagattggagatggttcatggagcccatctgggagggaatggaca--ctcaaccagtggccataactaggttgtatggcacaagtagtgttcat |
12950986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 119; Significance: 5e-61; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 25 - 194
Target Start/End: Original strand, 12127294 - 12127461
Alignment:
| Q |
25 |
tagcagatcacctattaggattctggaggccaagcacaacgtttactctgcaatcattggggagaaagtgtgcatgaagattggagatggttcatggagc |
124 |
Q |
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| T |
12127294 |
tagcagatcaactattaggattctggaggctaagcagaacgtttactctgcaatcattggggagaaagtgtgcatgaagattggagatggttcatggagc |
12127393 |
T |
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| Q |
125 |
ccatctgggagggaatggacactctcaacatgtggctataactatgctgtatggcacaattagtgttcat |
194 |
Q |
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| T |
12127394 |
ccatctaggagggaatggaca--ctcaaccagtggccataactaggttgtatggcacaagtagtgttcat |
12127461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 194
Target Start/End: Complemental strand, 32220353 - 32220285
Alignment:
| Q |
124 |
cccatctgggagggaatggacactctcaacatgtggctataactatgctgtatggcacaattagtgttcat |
194 |
Q |
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| T |
32220353 |
cccatctgggagggaatggaca--ctcaaccagtggccataactaggttgtatggcacaagtagtgttcat |
32220285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 119; Significance: 5e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 25 - 194
Target Start/End: Original strand, 23101499 - 23101666
Alignment:
| Q |
25 |
tagcagatcacctattaggattctggaggccaagcacaacgtttactctgcaatcattggggagaaagtgtgcatgaagattggagatggttcatggagc |
124 |
Q |
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| T |
23101499 |
tagcagatcaactattaggattctggaggccaagcagaacgtttactctgcaatcattggggagaaagtgtgcatgaagattggagatggttcatggagc |
23101598 |
T |
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| Q |
125 |
ccatctgggagggaatggacactctcaacatgtggctataactatgctgtatggcacaattagtgttcat |
194 |
Q |
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| T |
23101599 |
ccatctaggagggaatggaca--ctcaacccgtggccataactagattgtatggcacaagtagtgttcat |
23101666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 44 - 194
Target Start/End: Complemental strand, 39618903 - 39618756
Alignment:
| Q |
44 |
attctggaggccaagcacaacgtttactctgcaatcattggggagaaagtgtgcatgaagattggagatggttcatggagcccatctgggagggaatgga |
143 |
Q |
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| T |
39618903 |
attctggaggccaagcagaacgtttactctgcaatcattggggagaaagtgtgcatgaagattggagatggttcat-gagcccatctaggagggaatgga |
39618805 |
T |
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| Q |
144 |
cactctcaacatgtggctataactatgctgtatggcacaattagtgttcat |
194 |
Q |
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| T |
39618804 |
ca--ctcaaccagtggtcataactaggttgtatggcacaagtagtgttcat |
39618756 |
T |
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