View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11183_low_9 (Length: 560)
Name: NF11183_low_9
Description: NF11183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11183_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 526; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 1 - 554
Target Start/End: Complemental strand, 9377209 - 9376656
Alignment:
| Q |
1 |
atacttcaactcaaattgttgattgtatgtaacaataaatacaagcatgttggcaactttattttaactttatactacgaaaaagcttttacataagtgt |
100 |
Q |
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| T |
9377209 |
atacttcaactcaaattgttgattgtatgtaacaataaatacaagcatgttggcaaatttattttaactttatgctacgaaaaagcttttacataagtgt |
9377110 |
T |
|
| Q |
101 |
gtatcatgattcatgatttatgatgctaagcacttatactataagctgaaagaatatttcatactagagcacacttatactataactcaattgcgcaaca |
200 |
Q |
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| T |
9377109 |
gtatcatgattcatgatttatgatgctaagcacttatactataagctgaaagaatatttcatactagagcacacttatactataactcaattgcgcaaca |
9377010 |
T |
|
| Q |
201 |
tagagatgaaagaatatttcataccagtagtaattagaagaacagtagatcttgcaatcccatctgatttacaaacaaaacattcaacttcaccatttct |
300 |
Q |
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| T |
9377009 |
tagagatgaaagaatatttcataccagtagtaattagaagaacagtagatcttgcaatcccatctgatttacaaacaaaacattcaacttcaccatttct |
9376910 |
T |
|
| Q |
301 |
agtaccattcttccatttacatttcttcccttgaacttcacaaaaactacaatttggtttagaccatttcataatcaaactctctgtaacatcatcttcc |
400 |
Q |
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| T |
9376909 |
agtaccattcttccatttacatttcttcccttgaacttcacaaaaactacaatttggtttagaccatttcataatcaaactctctgcaacatcatcttcc |
9376810 |
T |
|
| Q |
401 |
cattcctcaatcatccagcccacattcaaaacttcactcacttttctacatgaaaccaattcaggatcaataaaatcatgactggaatcacgtagcagga |
500 |
Q |
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| T |
9376809 |
cattcctcaatcatccagcccacattcaaaacttcactcacttttctacatgaaaccaatttaggatcaataaaatcatgactggaatcacgtagcagaa |
9376710 |
T |
|
| Q |
501 |
tcggacaccccttgttcgaatcacaacgaaagaaagaaatgttaatgttacgcc |
554 |
Q |
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| T |
9376709 |
tcggacactccttgttcgaatcacaatgaaagaaagaaatgttaatgttacgcc |
9376656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 220 - 537
Target Start/End: Original strand, 9237122 - 9237439
Alignment:
| Q |
220 |
cataccagtagtaattagaagaacagtagatcttgcaatcccatctgatttacaaacaaaacattcaacttcaccatttctagtaccattcttccattta |
319 |
Q |
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|||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9237122 |
cataccagcagtaattagaagaacagtagattttgcaatcccgtctgatttacaaacaaaacattcaacttcaccatttctagtaccattcttccattta |
9237221 |
T |
|
| Q |
320 |
catttcttcccttgaacttcacaaaaactacaatttggtttagaccatttcataatcaaactctctgtaacatcatcttcccattcctcaatcatccagc |
419 |
Q |
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| T |
9237222 |
catttcttcccttgaacttcacaaaaactacaatttggtttagaccattctataatcaaactctctgtaacatcatcttcccattcctcaatcatccagc |
9237321 |
T |
|
| Q |
420 |
ccacattcaaaacttcactcacttttctacatgaaaccaattcaggatcaataaaatcatgactggaatcacgtagcaggatcggacaccccttgttcga |
519 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||| || | |||| |||| | |||||||| |
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| T |
9237322 |
ccacattcaaaacttcactcacttttctacatgaaaccaattcaggatcaataaaatcaccactagattcacgttgctgaatcgaacactctttgttcga |
9237421 |
T |
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| Q |
520 |
atcacaacgaaagaaaga |
537 |
Q |
| |
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|||||||||||||||||| |
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| T |
9237422 |
atcacaacgaaagaaaga |
9237439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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