View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11184_low_1 (Length: 406)
Name: NF11184_low_1
Description: NF11184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11184_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 16 - 399
Target Start/End: Original strand, 3657164 - 3657544
Alignment:
| Q |
16 |
tatacaacatatggagggtnnnnnnncctagtaacaaattcaaaaagggtatgaaaccaccagaaccatcatatgccttacctttaataggtcacctcca |
115 |
Q |
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| T |
3657164 |
tatacaacatatggagggtaaaaaaacctagtaacaaattcaa---gggtatgaaaccaccagaaccatcatatgccttacctttaataggtcacctcca |
3657260 |
T |
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| Q |
116 |
tctactaggaaaccaaatccctcttgcaagaatctttgcttcattttcagacaaatatggtcctatcttccaaatccattttggagcataccctgcactt |
215 |
Q |
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| T |
3657261 |
tctactaggaaaccaaatccctcttgcaagaatctttgcttcattttcagacaaatatggtcctatcttccaaatccattttggagcataccctgcactt |
3657360 |
T |
|
| Q |
216 |
attatttccaacaaagaagcaatcaaagaatgtttcactacaaatgacaaaatcttagcctcaagaccaaagtcaagtcatggaattcacctaggttata |
315 |
Q |
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| T |
3657361 |
attatttccaacaaagaagcaatcaaagaatgtttcactacaaatgacaaaatcttagcctcaagaccaaagtcaagtcatggaattcacctaggttata |
3657460 |
T |
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| Q |
316 |
actatgctggctttggttttgcaccttatggcccatattggaccaagctaagaaaattaaccatgcttgaactactttcatctc |
399 |
Q |
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| T |
3657461 |
actatgctggctttggttttgcaccttatggcccatattggaccaagctaagaaaattaaccatgcttgaactactttcgtctc |
3657544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 42 - 399
Target Start/End: Original strand, 7841475 - 7841829
Alignment:
| Q |
42 |
cctagtaacaaattcaaaaagggtatgaaaccaccagaaccatcatatgccttacctttaataggtcacctccatctactaggaaaccaaatccctcttg |
141 |
Q |
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| T |
7841475 |
cctagtaacaaattcaa---gggtatgaaaccaccagaaccattatttgcattacctttaataggtcacctccatctactaggaaaacaaatccctcttg |
7841571 |
T |
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| Q |
142 |
caagaatctttgcttcattttcagacaaatatggtcctatcttccaaatccattttggagcataccctgcacttattatttccaacaaagaagcaatcaa |
241 |
Q |
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| T |
7841572 |
caagaatctttgcttcattttctgacaaatatggtcctgtcttccaaatccgtttaggagcataccctgcacttattatttccaacaaagaagcaatcaa |
7841671 |
T |
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| Q |
242 |
agaatgtttcactacaaatgacaaaatcttagcctcaagaccaaagtcaagtcatggaattcacctaggttataactatgctggctttggttttgcacct |
341 |
Q |
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| T |
7841672 |
agaatgtttcaccacaaatgacaaaatcttagcctcaagaccaaagtcaagtcatggaattcacctaggttataactatgctggatttagttttgcacct |
7841771 |
T |
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| Q |
342 |
tatggcccatattggaccaagctaagaaaattaaccatgcttgaactactttcatctc |
399 |
Q |
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| T |
7841772 |
tctggcccatatttttcaaagctaaagaaaataaccatggttgaattactttcgtctc |
7841829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 42 - 292
Target Start/End: Original strand, 7845401 - 7845648
Alignment:
| Q |
42 |
cctagtaacaaattcaaaaagggtatgaaaccaccagaaccatcatatgccttacctttaataggtcacctccatctactaggaaaccaaatccctcttg |
141 |
Q |
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| T |
7845401 |
cctagtaacaaattcaa---gggtatgaaaccaccagaaccattatatgcattacctttaataggtcacctccatctactaggaaaacaaatccctcttg |
7845497 |
T |
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| Q |
142 |
caagaatctttgcttcattttcagacaaatatggtcctatcttccaaatccattttggagcataccctgcacttattatttccaacaaagaagcaatcaa |
241 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| || | |||||||| |
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| T |
7845498 |
caagaatctttgcttcattttctgacaaatatggtcctatcttccaaatccgtttaggagcataccctgcacttattatttccaaccaaaatgcaatcaa |
7845597 |
T |
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| Q |
242 |
agaatgtttcactacaaatgacaaaatcttagcctcaagaccaaagtcaag |
292 |
Q |
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| T |
7845598 |
agaatgtttcaccacaaatgacaaaatcttatcctcaagaccaaaatcaag |
7845648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 42 - 286
Target Start/End: Original strand, 7839419 - 7839660
Alignment:
| Q |
42 |
cctagtaacaaattcaaaaagggtatgaaaccaccagaaccatcatatgccttacctttaataggtcacctccatctactaggaaaccaaatccctcttg |
141 |
Q |
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| T |
7839419 |
cctagtaacaaattcaa---gggtatgaaaccaccagaaccattatttgcattaccattaataggtcagctccatctactaggaaaataaatctctcttg |
7839515 |
T |
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| Q |
142 |
caagaatctttgcttcattttcagacaaatatggtcctatcttccaaatccattttggagcataccctgcacttattatttccaacaaagaagcaatcaa |
241 |
Q |
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|||||| ||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||| || | |||||||| |
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| T |
7839516 |
caagaaactttgcttcattttctgacaaatatggtcctatcttccaaatccgtttaggagcatgccctgcacttattatttccaaccaaaatgcaatcaa |
7839615 |
T |
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| Q |
242 |
agaatgtttcactacaaatgacaaaatcttagcctcaagaccaaa |
286 |
Q |
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| |||||||||| ||||||||||||||||||||||||| |||||| |
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| T |
7839616 |
acaatgtttcaccacaaatgacaaaatcttagcctcaaaaccaaa |
7839660 |
T |
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