View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11184_low_2 (Length: 363)
Name: NF11184_low_2
Description: NF11184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11184_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 12 - 345
Target Start/End: Complemental strand, 7420504 - 7420175
Alignment:
| Q |
12 |
gagaagaaatgaattaaaaaattgattggttattcaaattttctttggatatattaaacaccagagaatggaaattgattggtttcatttgatgtgagac |
111 |
Q |
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| T |
7420504 |
gagaagaaatgaattaaaaaattgattggttattcaaattttctttcgatatattaaacaccagagaatggaaattgattggtttcatttgatgtgagac |
7420405 |
T |
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| Q |
112 |
gtgaagttgtttttacaacgctcataacctgagacatggatgatagttttgatcttagattgatcctaggacatttggtgatcttatttatttaattaat |
211 |
Q |
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| T |
7420404 |
gtgaagttttttttacaacgctcataacctgagacatggatgatagttttgatcttagattgatcctaggacatttggtgatcttatttatttaat---- |
7420309 |
T |
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| Q |
212 |
taatggttcaannnnnnnnnnnnatctcatatttggaaacaattattttccacgtgcaaaattttgttaaattagtgtgaataaatcatagactaaactc |
311 |
Q |
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| T |
7420308 |
taatggttcaaatttttttttttatctcatatttggaaacaattattttccacgtgcaaaattttgttaaattagtgtgaataaatcatagactaaactg |
7420209 |
T |
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| Q |
312 |
tttattcttggatcagtattgcttggtcttgaat |
345 |
Q |
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| T |
7420208 |
tttattcttggatcagtattgcttggtcttgaat |
7420175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 7501163 - 7501088
Alignment:
| Q |
18 |
aaatgaattaaaaaattgattggttattcaaattttctttggatatattaaacaccagagaatggaaattgattgg |
93 |
Q |
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| T |
7501163 |
aaatgaattaaaaaaattattggttattcaaattttctttgcatatattaaacaccagaaaatggtaatttattgg |
7501088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 7428182 - 7428120
Alignment:
| Q |
12 |
gagaagaaatgaattaaaaaattgattggttattcaaattttctttggatatattaaacaccaga |
76 |
Q |
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| T |
7428182 |
gagaagaaatggat--aaaaattgattggtctttgaaattttctttgaatatattaaactccaga |
7428120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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