View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11184_low_4 (Length: 266)
Name: NF11184_low_4
Description: NF11184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11184_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 162; Significance: 2e-86; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 17164079 - 17163826
Alignment:
| Q |
1 |
aactttgagtgatatttataaacgaaagtatagactggaaatatagacaaagatagagtaaggtcaaataaagacatcttgttttaaaaataaaagaacg |
100 |
Q |
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| T |
17164079 |
aactttgagtgatatttataaactaaaggatagattggaaatatagacaaagatagagtaaggtcaaataaagacatcttattttaaaaataaaagaacg |
17163980 |
T |
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| Q |
101 |
agcttagttaannnnnnngatgatctaatattataannnnnnnnnnnnn-ggactgcctgaataaatctttaactaagcaattaataatatgaacatgtg |
199 |
Q |
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| T |
17163979 |
agcttaattaatttttttgatgatctaatattataatcttttaattttttggactgcctgaataaatctttaactaagcaattaataatatgaacatgtg |
17163880 |
T |
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| Q |
200 |
atatttgaaaaggctattttgagagtttctgactcgagataaaccatgtttttc |
253 |
Q |
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| T |
17163879 |
atatttgaaaaggctattttgagagtttcggactcgagataaaccatgtttttc |
17163826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 157 - 245
Target Start/End: Complemental strand, 17160861 - 17160776
Alignment:
| Q |
157 |
ctgaataaatctttaactaagcaattaataatatgaacatgtgatatttgaaaaggctattttgagagtttctgactcgagataaacca |
245 |
Q |
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| T |
17160861 |
ctgaataaatttttaactaaccaattaata---tgaacatgtgatatttgaaatggataatttgagagtttctgactcgagaaaaacca |
17160776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 17157118 - 17157015
Alignment:
| Q |
1 |
aactttgagtgatatttataaacgaaagtatagactgg---aaatatagacaaagatagagtaaggtcaaataaagacatcttgttttaaaaataaaaga |
97 |
Q |
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| T |
17157118 |
aactttgagtgatatttataaacgaaaggatggacttgtataaatgtagacaaaaatagagttaggtcaactatcgacatcttaatttaaaaatgaaaaa |
17157019 |
T |
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| Q |
98 |
acga |
101 |
Q |
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|||| |
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| T |
17157018 |
acga |
17157015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 31 - 109
Target Start/End: Original strand, 25231248 - 25231326
Alignment:
| Q |
31 |
tagactggaaatatagacaaagatagagtaaggtcaaataaagacatcttgttttaaaaataaaagaacgagcttagtt |
109 |
Q |
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| T |
25231248 |
tagactggaaatatagacaaatatagagtaaggtcaaatagagacaacttatttaaaaaattaaagaacgtgcttagtt |
25231326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 25226059 - 25226169
Alignment:
| Q |
1 |
aactttgagtgatatttataaacgaaagtatagactgg--aaatatagacaaagatagagtaaggtcaaataaagacatcttgttttaaaaataaaagaa |
98 |
Q |
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||||||| ||||||||||||||| ||| ||||||| ||||||| ||||| ||||| |||||||||||| ||||| ||| ||| |||||| |||||| |
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| T |
25226059 |
aactttgggtgatatttataaacctaagggtagactgtgaaaatataaacaaaaatagaataaggtcaaatacagacagcttatttaaaaaatgaaagaa |
25226158 |
T |
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| Q |
99 |
cgagcttagtt |
109 |
Q |
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|| |||||||| |
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| T |
25226159 |
cgtgcttagtt |
25226169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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