View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11184_low_5 (Length: 239)

Name: NF11184_low_5
Description: NF11184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11184_low_5
NF11184_low_5
[»] chr5 (6 HSPs)
chr5 (1-222)||(17164151-17164372)
chr5 (23-222)||(17161129-17161328)
chr5 (23-222)||(17157207-17157406)
chr5 (23-222)||(26399397-26399596)
chr5 (21-222)||(28148477-28148684)
chr5 (23-222)||(28153134-28153339)
[»] chr3 (5 HSPs)
chr3 (23-222)||(25217289-25217479)
chr3 (23-222)||(25225781-25225971)
chr3 (23-222)||(25229102-25229292)
chr3 (23-222)||(25233829-25234019)
chr3 (23-100)||(25231035-25231112)
[»] chr1 (1 HSPs)
chr1 (36-222)||(19317259-19317445)


Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 17164151 - 17164372
Alignment:
Q  1 ccaacttaaccatcaccatgatcatgatcatgaaatatttaactatagtatatactcatataaaatgggtattagatattcttacatattatcccttcta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  17164151 ccaacttaaccatcaccatgatcatgatcatgaaatatttaactatagtatatactcatctaaaatgggtattagatattcttacatattatcccttcta 17164250  T
Q  101 caagcttcatgattctaattttccaatatttggagaaatgtatgacatatgcaattatgaacacaaccatggctcaaatgaagatgttgaatgtgcagtg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17164251 caagcttcatgattctaattttccaatatttggagaaatgtatgacatatgcaattatgaacacaaccatggctcaaatgaagatgttgaatgtgcagtg 17164350  T
Q  201 tgtctctgcaaaatagaagaag 222  Q
    ||||||||||||||||||||||    
T  17164351 tgtctctgcaaaatagaagaag 17164372  T

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Target: chr5; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 23 - 222
Target Start/End: Original strand, 17161129 - 17161328
Alignment:
Q  23 catgatcatgaaatatttaactatagtatatactcatataaaatgggtattagatattcttacatattatcccttctacaagcttcatgattctaatttt 122  Q
    ||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  17161129 catgatcatgaaatacttaactatagtttacactcatataaaatgggtattagatattcttacatattatcccttctacaagcttcatggttctaatttt 17161228  T
Q  123 ccaatatttggagaaatgtatgacatatgcaattatgaacacaaccatggctcaaatgaagatgttgaatgtgcagtgtgtctctgcaaaatagaagaag 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17161229 ccaatatttggagaaatgtatgacatatgcaattatgaacacaaccatggctcaaatgaagatgttgaatgtgcagtgtgtctctgcaaaatagaagaag 17161328  T

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Target: chr5; HSP #3
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 23 - 222
Target Start/End: Original strand, 17157207 - 17157406
Alignment:
Q  23 catgatcatgaaatatttaactatagtatatactcatataaaatgggtattagatattcttacatattatcccttctacaagcttcatgattctaatttt 122  Q
    |||||||||||| || |||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17157207 catgatcatgaagtacttaactctagtttacactcatataaaatgggtattagatattcttacatattatcccttctacaagcttcatgattctaatttt 17157306  T
Q  123 ccaatatttggagaaatgtatgacatatgcaattatgaacacaaccatggctcaaatgaagatgttgaatgtgcagtgtgtctctgcaaaatagaagaag 222  Q
    |||||| |||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  17157307 ccaataattggagaaatatatgatatatgcaattatgaacacacccatggctcaaatgaagatgttgaatgtgctgtgtgtctctgcaaaatagaagaag 17157406  T

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Target: chr5; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 23 - 222
Target Start/End: Complemental strand, 26399596 - 26399397
Alignment:
Q  23 catgatcatgaaatatttaactatagtatatactcatataaaatgggtattagatattcttacatattatcccttctacaagcttcatgattctaatttt 122  Q
    ||||||||| ||| | || ||| ||||||| ||| |  |||||||||||||| || | |||||||||||||||||||| ||||| ||||||||| |||||    
T  26399596 catgatcattaaacacttcactctagtatacacttacctaaaatgggtattaaatttccttacatattatcccttctataagctccatgattctcatttt 26399497  T
Q  123 ccaatatttggagaaatgtatgacatatgcaattatgaacacaaccatggctcaaatgaagatgttgaatgtgcagtgtgtctctgcaaaatagaagaag 222  Q
    |||||| ||| ||||||||||   |||||||||||||||| || |  || |||| | |||||||| |||||| | |||||||| || |||||||||||||    
T  26399496 ccaataattgaagaaatgtatagtatatgcaattatgaacccatctctgactcagaggaagatgtagaatgttctgtgtgtctatgtaaaatagaagaag 26399397  T

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Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 222
Target Start/End: Original strand, 28148477 - 28148684
Alignment:
Q  21 atcatgatcatgaaatatttaactatagtatatactcatataaaatgggtattagatattcttacatattatcccttct---acaagcttcatgattcta 117  Q
    ||||||||||||||||| ||||   |||| || |||||| ||||||||||||||||| | |||| ||||||||||||||   | ||||| |||  ||||     
T  28148477 atcatgatcatgaaatacttaagcctagtttacactcatctaaaatgggtattagatttccttatatattatcccttctataataagctccatcgttctc 28148576  T
Q  118 attttccaatatttggagaaatgtatgacatatgc---aattatgaacacaaccatggctcaaatgaagatgttgaatgtgcagtgtgtctctgcaaaat 214  Q
    ||||||||||| |||||||||||||  | | ||||   |||||| |||||||   | ||||| |||||||||| |||||||  |||||||||| ||||||    
T  28148577 attttccaataattggagaaatgtacaatacatgcattaattataaacacaaatcttgctcagatgaagatgtagaatgtgttgtgtgtctctccaaaat 28148676  T
Q  215 agaagaag 222  Q
    ||||||||    
T  28148677 agaagaag 28148684  T

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Target: chr5; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 23 - 222
Target Start/End: Original strand, 28153134 - 28153339
Alignment:
Q  23 catgatcatgaaatatttaactatagtatatactcatataaaatgggtattagatattcttacatattatcccttct---acaagcttcatgattctaat 119  Q
    ||||||||||||||| |||| | ||||||| |||||| |||||||| |||||||| | |||| ||||||||||||||   | ||||| ||| ||||| ||    
T  28153134 catgatcatgaaatacttaagtctagtatacactcatctaaaatggttattagatttccttatatattatcccttctataataagctccatcattctcat 28153233  T
Q  120 tttccaatatttggagaaatgtatgacatatgc---aattatgaacacaaccatggctcaaatgaagatgttgaatgtgcagtgtgtctctgcaaaatag 216  Q
    ||||||||| |||||||||||||  | | ||||   |||||| ||||||    | ||||| |||||||||| |||||||  || ||||||| ||||||||    
T  28153234 tttccaataattggagaaatgtacaatacatgcattaattataaacacacatcttgctcagatgaagatgtagaatgtgttgtatgtctctccaaaatag 28153333  T
Q  217 aagaag 222  Q
    ||||||    
T  28153334 aagaag 28153339  T

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Target: chr3 (Bit Score: 100; Significance: 1e-49; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 23 - 222
Target Start/End: Complemental strand, 25217479 - 25217289
Alignment:
Q  23 catgatcatgaaatatttaactatagtatatactcatataaaatgggtattagatattcttacatattatcccttctacaagcttcatgattctaatttt 122  Q
    |||||||||||| || ||||||||| | || |||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  25217479 catgatcatgaactacttaactatattttacactcatctaaaatgggtattagatattcttacatattatcccttctataaacttcatgattctaatttt 25217380  T
Q  123 ccaatatttggagaaatgtatgacatatgcaattatgaacacaaccatggctcaaatgaagatgttgaatgtgcagtgtgtctctgcaaaatagaagaag 222  Q
    |||||| | ||||||||||| || |||| ||||||||||||||         | ||||||||||| |||||||  |||||||||||||||||||||||||    
T  25217379 ccaataataggagaaatgtacgatatatacaattatgaacaca---------ccaatgaagatgtggaatgtgttgtgtgtctctgcaaaatagaagaag 25217289  T

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Target: chr3; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 23 - 222
Target Start/End: Complemental strand, 25225971 - 25225781
Alignment:
Q  23 catgatcatgaaatatttaactatagtatatactcatataaaatgggtattagatattcttacatattatcccttctacaagcttcatgattctaatttt 122  Q
    |||||||||||| || ||||||||| | || |||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  25225971 catgatcatgaactacttaactatattttacactcatctaaaatgggtattagatattcttacatattatcccttctataaacttcatgattctaatttt 25225872  T
Q  123 ccaatatttggagaaatgtatgacatatgcaattatgaacacaaccatggctcaaatgaagatgttgaatgtgcagtgtgtctctgcaaaatagaagaag 222  Q
    |||||| | ||||||||||| || |||| ||||||||||||||         | ||||||||||| |||||||  |||||||||||||||||||||||||    
T  25225871 ccaataataggagaaatgtacgatatatacaattatgaacaca---------ccaatgaagatgtggaatgtgttgtgtgtctctgcaaaatagaagaag 25225781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 23 - 222
Target Start/End: Complemental strand, 25229292 - 25229102
Alignment:
Q  23 catgatcatgaaatatttaactatagtatatactcatataaaatgggtattagatattcttacatattatcccttctacaagcttcatgattctaatttt 122  Q
    |||||||||||| || ||||||||| | || |||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  25229292 catgatcatgaactacttaactatattttacactcatctaaaatgggtattagatattcttacatattatcccttctataaacttcatgattctaatttt 25229193  T
Q  123 ccaatatttggagaaatgtatgacatatgcaattatgaacacaaccatggctcaaatgaagatgttgaatgtgcagtgtgtctctgcaaaatagaagaag 222  Q
    |||||| | ||||||||||| || |||| ||||||||||||||         | ||||||||||| |||||||  |||||||||||||||||||||||||    
T  25229192 ccaataataggagaaatgtacgatatatacaattatgaacaca---------ccaatgaagatgtggaatgtgttgtgtgtctctgcaaaatagaagaag 25229102  T

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Target: chr3; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 23 - 222
Target Start/End: Complemental strand, 25234019 - 25233829
Alignment:
Q  23 catgatcatgaaatatttaactatagtatatactcatataaaatgggtattagatattcttacatattatcccttctacaagcttcatgattctaatttt 122  Q
    |||||||||||| || ||||||||| | || |||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  25234019 catgatcatgaactacttaactatattttacactcatctaaaatgggtattagatattcttacatattatcccttctataaacttcatgattctaatttt 25233920  T
Q  123 ccaatatttggagaaatgtatgacatatgcaattatgaacacaaccatggctcaaatgaagatgttgaatgtgcagtgtgtctctgcaaaatagaagaag 222  Q
    |||||| | ||||||||||| || |||| ||||||||||||||         | ||||||||||| |||||||  |||||||||||||||||||||||||    
T  25233919 ccaataataggagaaatgtacgatatatacaattatgaacaca---------ccaatgaagatgtggaatgtgttgtgtgtctctgcaaaatagaagaag 25233829  T

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Target: chr3; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 23 - 100
Target Start/End: Complemental strand, 25231112 - 25231035
Alignment:
Q  23 catgatcatgaaatatttaactatagtatatactcatataaaatgggtattagatattcttacatattatcccttcta 100  Q
    |||||||||||| || ||||||||| | || |||||| ||||||||||||||||||||||||||||||||||||||||    
T  25231112 catgatcatgaactacttaactatattttacactcatctaaaatgggtattagatattcttacatattatcccttcta 25231035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 36 - 222
Target Start/End: Original strand, 19317259 - 19317445
Alignment:
Q  36 tatttaactatagtatatactcatataaaatgggtattagatattcttacatattatcccttctacaagcttcatgattctaattttccaatatttggag 135  Q
    ||||||||| ||||||| |||||| ||||||||| | ||||| |||||||||||||||| ||||| ||||| ||||||||| ||||||||||| ||||||    
T  19317259 tatttaactctagtatacactcatctaaaatgggcaatagattttcttacatattatccattctataagctccatgattctcattttccaataattggag 19317358  T
Q  136 aaatgtatgacatatgcaattatgaacacaaccatggctcaaatgaagatgttgaatgtgcagtgtgtctctgcaaaatagaagaag 222  Q
    |||||||| | |||||||||||||||  || || || |||| |  ||||||| |||||||  |||||||| ||||||||||||||||    
T  19317359 aaatgtataatatatgcaattatgaatccatccctgactcagagaaagatgtagaatgtgttgtgtgtctatgcaaaatagaagaag 19317445  T

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