View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11184_low_6 (Length: 205)
Name: NF11184_low_6
Description: NF11184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11184_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 127; Significance: 9e-66; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 20 - 190
Target Start/End: Original strand, 34592636 - 34592806
Alignment:
| Q |
20 |
gaatgctgcatatttttcatataagatataatcaaaatcatagaaatatgatctaaagaacaatataaggtcaattttgtagctatattacctcccatag |
119 |
Q |
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| T |
34592636 |
gaatgctgcatatttttcatataagatataatcaaaatcatagaaatatgatctaaaaaacaatataaggtcaattttgtaggtatattacctcccataa |
34592735 |
T |
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| Q |
120 |
atctcttgcatcaacaatagcttctggttctaaacctatatccgaccaagatgcagttaccgttgcctttg |
190 |
Q |
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| T |
34592736 |
atctcttgcatcaacaatggcttctggttctaggcctatttcagaccaggatgcaattaccgttgcatttg |
34592806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 107 - 190
Target Start/End: Original strand, 34577227 - 34577310
Alignment:
| Q |
107 |
ttacctcccatagatctcttgcatcaacaatagcttctggttctaaacctatatccgaccaagatgcagttaccgttgcctttg |
190 |
Q |
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| T |
34577227 |
ttacctcccataaatctcttgcatcaactatcgtttctggttcaaggcctatgtcagaccaagacgcagtaactgttgcatttg |
34577310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 107 - 190
Target Start/End: Original strand, 32599926 - 32600009
Alignment:
| Q |
107 |
ttacctcccatagatctcttgcatcaacaatagcttctggttctaaacctatatccgaccaagatgcagttaccgttgcctttg |
190 |
Q |
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| T |
32599926 |
ttacctcccataaatctcttgcatcaactatagtttctgatttcagacctatgtctgaccaagatgcagttactgttgcatttg |
32600009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 190
Target Start/End: Original strand, 32589478 - 32589561
Alignment:
| Q |
107 |
ttacctcccatagatctcttgcatcaacaatagcttctggttctaaacctatatccgaccaagatgcagttaccgttgcctttg |
190 |
Q |
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| T |
32589478 |
ttacctcccataaatctcttgcatcaactatagtttctgatttcagacctatgtctaaccaagatgcagttactgttgcatttg |
32589561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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