View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11185_low_2 (Length: 395)

Name: NF11185_low_2
Description: NF11185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11185_low_2
NF11185_low_2
[»] chr1 (1 HSPs)
chr1 (1-377)||(44377506-44377882)
[»] chr8 (3 HSPs)
chr8 (148-341)||(38721005-38721198)
chr8 (247-343)||(13826250-13826346)
chr8 (4-104)||(38721345-38721445)
[»] chr4 (1 HSPs)
chr4 (4-104)||(54383968-54384068)
[»] chr3 (3 HSPs)
chr3 (193-377)||(1177401-1177585)
chr3 (250-341)||(9477841-9477932)
chr3 (7-62)||(49592507-49592562)
[»] chr2 (2 HSPs)
chr2 (1-58)||(15170642-15170699)
chr2 (190-344)||(5128761-5128915)
[»] chr7 (2 HSPs)
chr7 (304-343)||(43436252-43436291)
chr7 (172-242)||(44632939-44633009)


Alignment Details
Target: chr1 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 44377882 - 44377506
Alignment:
Q  1 gtaatatgtgaaatttggtttgctgtatcatggattttggatcagtttccaaaatggtctccagttgagcgagaaacataccttgatcgtttatcactga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44377882 gtaatatgtgaaatttggtttgctgtatcatggattttggatcagtttccaaaatggtctccagttgagcgagaaacataccttgatcgtttatcactga 44377783  T
Q  101 ggtacgagaaagaaggaaagccgtgtgaattatctgatattgacatatttgttagtactgtggatcctatgaaagagcctcctcttataactgcaaacac 200  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44377782 ggtacgagaaagaaggaaagccgtgtgaattatccgatattgacatatttgttagtactgtggatcctatgaaagagcctcctcttataactgcaaacac 44377683  T
Q  201 agttctgtccatcctagcagtagattatccggtggaaaaagtggcgtgctatgtctcagacgacggtgcagctatgctaacatttgaagccctttcagaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44377682 agttctgtccatcctagcagtagattatccggtggaaaaagtggcgtgctatgtctcagacgacggtgcagctatgctaacatttgaagccctttcagaa 44377583  T
Q  301 acttcagagtttgcaagaaaatgggttccattctgcaagaagttcagcatcgaaccacgggctcctgagtggtattt 377  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  44377582 acttcagagtttgcaagaaaatgggttccattctgcaagaagttcagcattgaaccgcgggctcctgagtggtattt 44377506  T

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Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 148 - 341
Target Start/End: Complemental strand, 38721198 - 38721005
Alignment:
Q  148 tttgttagtactgtggatcctatgaaagagcctcctcttataactgcaaacacagttctgtccatcctagcagtagattatccggtggaaaaagtggcgt 247  Q
    ||||| |||||||| |||||||||||||| ||||| || || || |||||||| ||||| || ||||| || || || ||||| || || ||||| || |    
T  38721198 tttgtcagtactgttgatcctatgaaagaacctccactgatcacagcaaacactgttctatctatccttgctgttgactatccagttgataaagttgcat 38721099  T
Q  248 gctatgtctcagacgacggtgcagctatgctaacatttgaagccctttcagaaacttcagagtttgcaagaaaatgggttccattctgcaagaa 341  Q
    ||||||| || || || ||||| ||||||||||| |||||||| ||||| || || || || ||||| || || |||||||| || ||||||||    
T  38721098 gctatgtttcggatgatggtgctgctatgctaacttttgaagcactttctgagacatctgaatttgctaggaagtgggttccgttttgcaagaa 38721005  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 247 - 343
Target Start/End: Complemental strand, 13826346 - 13826250
Alignment:
Q  247 tgctatgtctcagacgacggtgcagctatgctaacatttgaagccctttcagaaacttcagagtttgcaagaaaatgggttccattctgcaagaagt 343  Q
    |||||||| || || ||||| || |||||| | ||||||||||| ||| | ||||| ||||||||||||||||||||||||||||||  ||||||||    
T  13826346 tgctatgtttctgatgacggcgccgctatgttgacatttgaagctcttgctgaaacatcagagtttgcaagaaaatgggttccattcaccaagaagt 13826250  T

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Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 4 - 104
Target Start/End: Complemental strand, 38721445 - 38721345
Alignment:
Q  4 atatgtgaaatttggtttgctgtatcatggattttggatcagtttccaaaatggtctccagttgagcgagaaacataccttgatcgtttatcactgaggt 103  Q
    ||||||||||| |||||||||||||| |||||  |||||||||||||||||||||  ||| |   ||||||||| |||||||| ||| | ||||||||||    
T  38721445 atatgtgaaatatggtttgctgtatcttggataatggatcagtttccaaaatggtacccaataacgcgagaaacgtaccttgaccgtctttcactgaggt 38721346  T
Q  104 a 104  Q
    |    
T  38721345 a 38721345  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 4 - 104
Target Start/End: Complemental strand, 54384068 - 54383968
Alignment:
Q  4 atatgtgaaatttggtttgctgtatcatggattttggatcagtttccaaaatggtctccagttgagcgagaaacataccttgatcgtttatcactgaggt 103  Q
    ||||||||||| ||||||||| ||||||||||  | |||||||| || ||||||| |||  ||||  |||||||||||||||| ||| | ||||| ||||    
T  54384068 atatgtgaaatctggtttgctatatcatggatccttgatcagttccccaaatggtatcctattgatagagaaacataccttgaccgtctttcactcaggt 54383969  T
Q  104 a 104  Q
    |    
T  54383968 a 54383968  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 193 - 377
Target Start/End: Complemental strand, 1177585 - 1177401
Alignment:
Q  193 gcaaacacagttctgtccatcctagcagtagattatccggtggaaaaagtggcgtgctatgtctcagacgacggtgcagctatgctaacatttgaagccc 292  Q
    |||||||||||||| || || |||||| ||||||| || |  ||||| ||| | || ||||| || || || || ||||| ||| |||||||||| ||      
T  1177585 gcaaacacagttctatcaattctagcaatagattaccctgctgaaaaggtgtcatgttatgtttctgatgatggagcagcaatgttaacatttgaggcat 1177486  T
Q  293 tttcagaaacttcagagtttgcaagaaaatgggttccattctgcaagaagttcagcatcgaaccacgggctcctgagtggtattt 377  Q
    | || |||||||| || |||||||| ||||||||||| || || |||||||||| ||| |||||  | ||||| || ||||||||    
T  1177485 tatctgaaacttctgaatttgcaaggaaatgggttcctttttgtaagaagttcaacattgaacctagagctccagaatggtattt 1177401  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 250 - 341
Target Start/End: Original strand, 9477841 - 9477932
Alignment:
Q  250 tatgtctcagacgacggtgcagctatgctaacatttgaagccctttcagaaacttcagagtttgcaagaaaatgggttccattctgcaagaa 341  Q
    |||||||| || || ||||| |||||| | ||||||||||| ||| | || || ||||| |||||||| ||||||||||| |||||||||||    
T  9477841 tatgtctctgatgatggtgctgctatgttgacatttgaagctcttgccgagacatcagaatttgcaaggaaatgggttcctttctgcaagaa 9477932  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 62
Target Start/End: Complemental strand, 49592562 - 49592507
Alignment:
Q  7 tgtgaaatttggtttgctgtatcatggattttggatcagtttccaaaatggtctcc 62  Q
    ||||| |||||||||||  | || ||||||||||||||||||||||||||||||||    
T  49592562 tgtgagatttggtttgcattttcctggattttggatcagtttccaaaatggtctcc 49592507  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 15170642 - 15170699
Alignment:
Q  1 gtaatatgtgaaatttggtttgctgtatcatggattttggatcagtttccaaaatggt 58  Q
    |||||||||||||| ||||||||  ||||||||||  | |||||||||||||||||||    
T  15170642 gtaatatgtgaaatatggtttgcattatcatggatacttgatcagtttccaaaatggt 15170699  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 344
Target Start/End: Complemental strand, 5128915 - 5128761
Alignment:
Q  190 actgcaaacacagttctgtccatcctagcagtagattatccggtggaaaaagtggcgtgctatgtctcagacgacggtgcagctatgctaacatttgaag 289  Q
    ||||| ||||||||||| || ||||| || || || ||||| |||||||||||  | || ||||| ||||| || ||||| || ||||| |||||||||     
T  5128915 actgccaacacagttctttctatccttgccgtggactatcctgtggaaaaagtatcatgttatgtttcagatgatggtgctgcaatgctgacatttgaat 5128816  T
Q  290 ccctttcagaaacttcagagtttgcaagaaaatgggttccattctgcaagaagtt 344  Q
    |||||   || ||  | || ||||||||||| ||||| ||||| ||||| |||||    
T  5128815 cccttgtggagacagctgactttgcaagaaagtgggtaccattttgcaaaaagtt 5128761  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 304 - 343
Target Start/End: Complemental strand, 43436291 - 43436252
Alignment:
Q  304 tcagagtttgcaagaaaatgggttccattctgcaagaagt 343  Q
    ||||||||||| |||||||||||||| |||||||||||||    
T  43436291 tcagagtttgcgagaaaatgggttcctttctgcaagaagt 43436252  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 242
Target Start/End: Original strand, 44632939 - 44633009
Alignment:
Q  172 aaagagcctcctcttataactgcaaacacagttctgtccatcctagcagtagattatccggtggaaaaagt 242  Q
    |||||||| |||||| |||||||||||||  || | || ||||| ||||| |||||||| |||||||||||    
T  44632939 aaagagccacctcttgtaactgcaaacaccattttatctatccttgcagttgattatcctgtggaaaaagt 44633009  T

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