View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11185_low_3 (Length: 247)

Name: NF11185_low_3
Description: NF11185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11185_low_3
NF11185_low_3
[»] chr2 (4 HSPs)
chr2 (1-138)||(923643-923780)
chr2 (177-237)||(22996457-22996517)
chr2 (42-118)||(2191743-2191819)
chr2 (39-78)||(923640-923679)
[»] chr8 (1 HSPs)
chr8 (13-138)||(27540840-27540964)
[»] chr7 (1 HSPs)
chr7 (39-135)||(45032127-45032223)
[»] chr3 (2 HSPs)
chr3 (46-137)||(46833118-46833209)
chr3 (39-85)||(46833200-46833245)
[»] chr5 (1 HSPs)
chr5 (39-133)||(4357204-4357297)


Alignment Details
Target: chr2 (Bit Score: 102; Significance: 9e-51; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 923643 - 923780
Alignment:
Q  1 tttaagagttccgattgaaaaatggtgtctttttagatttctttaagagtttagatagaaaaatggtgtctttttagagtttagaaattaatgcaactga 100  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| | ||    
T  923643 tttaagagtttggattgaaaaatggtgtctttttagatttctttaagagtttagatagaaaaatagtgtctttttagagtttagaaatgaatgcagcaga 923742  T
Q  101 actatgtttcaaacacatggacaagtgttctaataata 138  Q
     ||| |||||||||||||||||| ||||||||||||||    
T  923743 tctaagtttcaaacacatggacatgtgttctaataata 923780  T

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Target: chr2; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 177 - 237
Target Start/End: Original strand, 22996457 - 22996517
Alignment:
Q  177 aataagttatttggatttattcattattaataacttacatcaacagatagctctatttcat 237  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  22996457 aataagttatttggatttattcattattaataacttacatcaatagatagctctatttcat 22996517  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 118
Target Start/End: Complemental strand, 2191819 - 2191743
Alignment:
Q  42 tttaagagtttagatagaaaaatggtgtctttttagagtttagaaattaatgcaactgaactatgtttcaaacacat 118  Q
    |||||||| ||| ||||||||| |||||| ||  |||| |||||||| |||||||||||  || |||||||||||||    
T  2191819 tttaagagcttatatagaaaaaaggtgtcgttgaagagcttagaaatgaatgcaactgatataagtttcaaacacat 2191743  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 78
Target Start/End: Original strand, 923640 - 923679
Alignment:
Q  39 ttctttaagagtttagatagaaaaatggtgtctttttaga 78  Q
    |||||||||||||| ||| |||||||||||||||||||||    
T  923640 ttctttaagagtttggattgaaaaatggtgtctttttaga 923679  T

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Target: chr8 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 13 - 138
Target Start/End: Complemental strand, 27540964 - 27540840
Alignment:
Q  13 gattgaaaaatggtgtctttttagatttctttaagagtttagatagaaaaatggtgtctttttagagtttagaaattaatgcaactgaactatgtttcaa 112  Q
    ||||||||||| ||||| ||||| | |||||||||||||||||||||||||||||||| ||||| || ||| |||| ||||||  | | ||| |||||||    
T  27540964 gattgaaaaatagtgtcgttttatagttctttaagagtttagatagaaaaatggtgtc-ttttatagcttataaatgaatgcagataatctaagtttcaa 27540866  T
Q  113 acacatggacaagtgttctaataata 138  Q
    ||||||||||| ||||||||||||||    
T  27540865 acacatggacatgtgttctaataata 27540840  T

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Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 39 - 135
Target Start/End: Original strand, 45032127 - 45032223
Alignment:
Q  39 ttctttaagagtttagatagaaaaatggtgtctttttagagtttagaaattaatgcaactgaactatgtttcaaacacatggacaagtgttctaata 135  Q
    |||||||||||| ||||||| ||||| ||||||||| |||||||| ||||  |||||||| | ||| |||||||||||||||||| |||| ||||||    
T  45032127 ttctttaagagtgtagatagtaaaattgtgtcttttaagagtttataaatgtatgcaacttatctaagtttcaaacacatggacatgtgtgctaata 45032223  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 46 - 137
Target Start/End: Complemental strand, 46833209 - 46833118
Alignment:
Q  46 agagtttagatagaaaaatggtgtctttttagagtttagaaattaatgcaactgaactatgtttcaaacacatggacaagtgttctaataat 137  Q
    |||||||||||| ||||||||||||||||||||||||| |||| ||||||  ||| ||| |||||||| |||||||||  | ||||||||||    
T  46833209 agagtttagataaaaaaatggtgtctttttagagtttaaaaatgaatgcagttgatctaagtttcaaatacatggacatattttctaataat 46833118  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 85
Target Start/End: Complemental strand, 46833245 - 46833200
Alignment:
Q  39 ttctttaagagtttagatagaaaaatggtgtctttttagagtttaga 85  Q
    |||||||||||||| ||| ||||| ||||||||||||||||||||||    
T  46833245 ttctttaagagtttcgattgaaaa-tggtgtctttttagagtttaga 46833200  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 133
Target Start/End: Original strand, 4357204 - 4357297
Alignment:
Q  39 ttctttaagagtttagatagaaaaatggtgtctttttagagtttagaaattaatgcaactgaactatgtttcaaacacatggacaagtgttctaa 133  Q
    ||||||||||||||||||| |||||  ||||||||  ||||||| ||||| |||||| |||| ||| |||| ||||||||||||| |||||||||    
T  4357204 ttctttaagagtttagatataaaaaatgtgtcttta-agagtttggaaatgaatgcagctgatctaagtttaaaacacatggacatgtgttctaa 4357297  T

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