View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11185_low_4 (Length: 240)
Name: NF11185_low_4
Description: NF11185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11185_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 11 - 174
Target Start/End: Complemental strand, 18019114 - 18018948
Alignment:
| Q |
11 |
gtgagatgaagcaaacttgtttgactcacaacatt---ttgtttcaatggcactgccaaagaatgaaatggtcaatgttggtgttcaactctaacaataa |
107 |
Q |
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| T |
18019114 |
gtgaggtgaagcaaacttgtttgactcacaacgttgttttgtttcaatggcactgccaaagagtgaaatggtcaatgttggtgttcaactctaacaataa |
18019015 |
T |
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| Q |
108 |
tctaagttataataactcacgtgttgtaccaatcagatctaaccatcaatcagtatattttactata |
174 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
18019014 |
tctaagttataataactcacgtgttgtaccaatcagatctaacaatcaatcattatattttactata |
18018948 |
T |
|
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Target: chr2 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 11 - 174
Target Start/End: Original strand, 3060202 - 3060368
Alignment:
| Q |
11 |
gtgagatgaagcaaacttgtttgactcacaacatt---ttgtttcaatggcactgccaaagaatgaaatggtcaatgttggtgttcaactctaacaataa |
107 |
Q |
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||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
3060202 |
gtgaggtgaagcaaacttgtttgactcacaacgttgttttgtttcaatggcactgccaaagagtgaaatggtcaatgttggtgttcaactctaacaataa |
3060301 |
T |
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| Q |
108 |
tctaagttataataactcacgtgttgtaccaatcagatctaaccatcaatcagtatattttactata |
174 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
3060302 |
tctaagttataataactcacgtgttgtaccaatcagatctaacaatcaatcattatattttactata |
3060368 |
T |
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