View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11185_low_6 (Length: 229)

Name: NF11185_low_6
Description: NF11185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11185_low_6
NF11185_low_6
[»] scaffold0003 (4 HSPs)
scaffold0003 (79-158)||(34871-34950)
scaffold0003 (86-158)||(41541-41613)
scaffold0003 (7-53)||(41667-41713)
scaffold0003 (7-46)||(35004-35043)
[»] chr8 (3 HSPs)
chr8 (65-178)||(42312276-42312388)
chr8 (7-53)||(42312420-42312466)
chr8 (65-144)||(15580653-15580733)
[»] chr1 (4 HSPs)
chr1 (83-178)||(47247043-47247137)
chr1 (65-175)||(41326063-41326172)
chr1 (7-53)||(41326204-41326250)
chr1 (7-53)||(47246946-47246992)
[»] chr6 (6 HSPs)
chr6 (86-158)||(27445745-27445817)
chr6 (65-137)||(20909203-20909274)
chr6 (65-137)||(20923651-20923722)
chr6 (7-53)||(27445645-27445691)
chr6 (8-53)||(20909306-20909351)
chr6 (8-53)||(20923754-20923799)


Alignment Details
Target: scaffold0003 (Bit Score: 64; Significance: 4e-28; HSPs: 4)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 34950 - 34871
Alignment:
Q  79 aactgggggtgttcattccttgaagcaggaaaacaacaaagactataaaaggtgactttttatgatgtaaatgaaatact 158  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||| |||||||||||||    
T  34950 aactgggggtgttcattccttgaagcatgaaaacaacaaaggctatgaaaggtgactttttatgatctaaatgaaatact 34871  T

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Target: scaffold0003; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 86 - 158
Target Start/End: Complemental strand, 41613 - 41541
Alignment:
Q  86 ggtgttcattccttgaagcaggaaaacaacaaagactataaaaggtgactttttatgatgtaaatgaaatact 158  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| || ||||||||||    
T  41613 ggtgttcattccttgaagcaggaaaacaacaaaggctatgaaaggtgactttttatgatctatatgaaatact 41541  T

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Target: scaffold0003; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 41713 - 41667
Alignment:
Q  7 ttttgtaagactttaaatgacatccatccaagcttgagtgatccatc 53  Q
    ||||| ||||||| |||||||||||||||||||||||||||| ||||    
T  41713 ttttggaagacttaaaatgacatccatccaagcttgagtgattcatc 41667  T

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Target: scaffold0003; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 35043 - 35004
Alignment:
Q  7 ttttgtaagactttaaatgacatccatccaagcttgagtg 46  Q
    ||||| ||||||| ||||||||||||||||||||||||||    
T  35043 ttttggaagacttaaaatgacatccatccaagcttgagtg 35004  T

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Target: chr8 (Bit Score: 62; Significance: 6e-27; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 65 - 178
Target Start/End: Complemental strand, 42312388 - 42312276
Alignment:
Q  65 actcttgctataccaactgggggtgttcattccttgaagcaggaaaacaacaaagactataaaaggtgactttttatgatgtaaatgaaatactatgagt 164  Q
    |||||||||  || |||||||||||||||||| |||||||||||||| |||||| | |||||||||||||||| | ||||||| |||||||||||||||     
T  42312388 actcttgctggacaaactgggggtgttcattcattgaagcaggaaaagaacaaaaa-tataaaaggtgactttctctgatgtagatgaaatactatgagc 42312290  T
Q  165 gaacttatacatgt 178  Q
    ||| ||||||||||    
T  42312289 gaaattatacatgt 42312276  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 42312466 - 42312420
Alignment:
Q  7 ttttgtaagactttaaatgacatccatccaagcttgagtgatccatc 53  Q
    ||||| |||||||||||||| ||||||||||||||||||||| ||||    
T  42312466 ttttggaagactttaaatgaaatccatccaagcttgagtgattcatc 42312420  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 144
Target Start/End: Complemental strand, 15580733 - 15580653
Alignment:
Q  65 actcttgctataccaactgggggtgttcattccttgaagcaggaaaa-caacaaagactataaaaggtgactttttatgat 144  Q
    |||||||||| |  |||||||| ||||| ||| || ||||||||||| |||||||| ||| ||||||||||||||| ||||    
T  15580733 actcttgctagattaactggggttgttctttcattaaagcaggaaaagcaacaaaggctacaaaaggtgactttttctgat 15580653  T

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Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 83 - 178
Target Start/End: Original strand, 47247043 - 47247137
Alignment:
Q  83 gggggtgttcattccttgaagcaggaaaacaacaaagactataaaaggtgactttttatgatgtaaatgaaatactatgagtgaacttatacatgt 178  Q
    |||||||||||||| ||||||||||||||||||||| | |||||||||||||||| ||||||||| |||||||||||| || ||| ||||||||||    
T  47247043 gggggtgttcattcattgaagcaggaaaacaacaaaaa-tataaaaggtgactttctatgatgtagatgaaatactataagcgaaattatacatgt 47247137  T

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Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 65 - 175
Target Start/End: Complemental strand, 41326172 - 41326063
Alignment:
Q  65 actcttgctataccaactgggggtgttcattccttgaagcaggaaaacaacaaagactataaaaggtgactttttatgatgtaaatgaaatactatgagt 164  Q
    |||||||||| || |||||||||||||||||| ||||||| ||||||||||||| |  ||||||||||||||| ||||||||| |||||| ||||||||     
T  41326172 actcttgctagacaaactgggggtgttcattcattgaagcgggaaaacaacaaa-aaaataaaaggtgactttctatgatgtagatgaaaaactatgagc 41326074  T
Q  165 gaacttataca 175  Q
    ||| |||||||    
T  41326073 gaaattataca 41326063  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 41326250 - 41326204
Alignment:
Q  7 ttttgtaagactttaaatgacatccatccaagcttgagtgatccatc 53  Q
    ||||| |||| ||||||||| ||||||||||||||||||||| ||||    
T  41326250 ttttggaagaatttaaatgaaatccatccaagcttgagtgattcatc 41326204  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 47246946 - 47246992
Alignment:
Q  7 ttttgtaagactttaaatgacatccatccaagcttgagtgatccatc 53  Q
    ||||| ||| |||||||||| ||||||||||||||||||||| ||||    
T  47246946 ttttggaaggctttaaatgaaatccatccaagcttgagtgattcatc 47246992  T

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Target: chr6 (Bit Score: 57; Significance: 6e-24; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 86 - 158
Target Start/End: Original strand, 27445745 - 27445817
Alignment:
Q  86 ggtgttcattccttgaagcaggaaaacaacaaagactataaaaggtgactttttatgatgtaaatgaaatact 158  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| || ||||||||||    
T  27445745 ggtgttcattccttgaagcaggaaaacaacaaaggctatgaaaggtgactttttatgatctatatgaaatact 27445817  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 65 - 137
Target Start/End: Complemental strand, 20909274 - 20909203
Alignment:
Q  65 actcttgctataccaactgggggtgttcattccttgaagcaggaaaacaacaaagactataaaaggtgacttt 137  Q
    |||||||||| || |||||||||||||||||| ||||||| ||||||||||||| | ||||||||||||||||    
T  20909274 actcttgctagacaaactgggggtgttcattcattgaagcgggaaaacaacaaa-aatataaaaggtgacttt 20909203  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 65 - 137
Target Start/End: Complemental strand, 20923722 - 20923651
Alignment:
Q  65 actcttgctataccaactgggggtgttcattccttgaagcaggaaaacaacaaagactataaaaggtgacttt 137  Q
    |||||||||| || |||||||||||||||||| ||||||| ||||||||||||| | ||||||||||||||||    
T  20923722 actcttgctagacaaactgggggtgttcattcattgaagcgggaaaacaacaaa-aatataaaaggtgacttt 20923651  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 27445645 - 27445691
Alignment:
Q  7 ttttgtaagactttaaatgacatccatccaagcttgagtgatccatc 53  Q
    ||||| ||||||| |||||||||||||||||||||||||||| ||||    
T  27445645 ttttggaagacttaaaatgacatccatccaagcttgagtgattcatc 27445691  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 20909351 - 20909306
Alignment:
Q  8 tttgtaagactttaaatgacatccatccaagcttgagtgatccatc 53  Q
    |||| |||||||||||||| ||||||||||||||||||||| ||||    
T  20909351 tttggaagactttaaatgaaatccatccaagcttgagtgattcatc 20909306  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 20923799 - 20923754
Alignment:
Q  8 tttgtaagactttaaatgacatccatccaagcttgagtgatccatc 53  Q
    |||| |||||||||||||| ||||||||||||||||||||| ||||    
T  20923799 tttggaagactttaaatgaaatccatccaagcttgagtgattcatc 20923754  T

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