View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11186_high_1 (Length: 407)
Name: NF11186_high_1
Description: NF11186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11186_high_1 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 16 - 407
Target Start/End: Complemental strand, 35352098 - 35351707
Alignment:
| Q |
16 |
ggggtgtggcattctccaacaatgaataagtggacattaattacttttaacattttcaaaacctaaactctacgaaaattcatctccttctacacaatgt |
115 |
Q |
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| T |
35352098 |
ggggtgtggcattctccaacaatgaataggtggacattaattacttttaacattttcaaaacctaaactctacgaaaattcatctccttctacacaatgt |
35351999 |
T |
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| Q |
116 |
gagcttctcagaatcaaaataataattccaggaacatattaattatttttcccatgagcaatagcgcttttggaagtgcttcaacaagacattaaacaaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35351998 |
gagcttctcagaatcaaaataataattccaggaacatagtaattatttttcccatgagcaatagcgcttttggaagtgcttcaacaagacattaaacaaa |
35351899 |
T |
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| Q |
216 |
agnnnnnnntgaaacagtaatacgaaaactttgttgacataggtatttcttaccatattgaatataatagtcaagcattacctgcacatcattttgattt |
315 |
Q |
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|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35351898 |
agaaaaaaatgaaacagtaatacaaaaactttgttgacataggtatttcttaccatattgaatataatagtcaagcattacctgcacatcattttgattt |
35351799 |
T |
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| Q |
316 |
gtattttcatcaccaaacttgtttagctgtcctgcatctacaggtggagggttactttgctcagaggtatcctccaaagattgtgtttctcc |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35351798 |
gtattttcatcaccaaacttgtttagctgtcctgcatctacaggtggagggttactttgctcagaggtatcctccaaagattgtgtttctcc |
35351707 |
T |
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