View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11186_high_2 (Length: 236)
Name: NF11186_high_2
Description: NF11186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11186_high_2 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 54217388 - 54217611
Alignment:
| Q |
13 |
aaaaatgacaatgaaaagatctattactaaaattgagaatagtatttactagcgttttaaaaaccagactgtaaatcgatcggtaagacatctgggttat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54217388 |
aaaaatgacaatgaaaagatctattactaaaattgagaatagtatttactagcgttttaaaaaccagactgtaaatcgatcggtaagacatctgggttat |
54217487 |
T |
|
| Q |
113 |
ggttcaattggttttnnnnnnnnnnnnnnnntgcaaacaatcgaaactggttgaaataaacgtggttcaacctttttcaaccagaccacaatagaatcgg |
212 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54217488 |
ggttcaattggttttaaaaaagtgaaaaaaatgcaaacaatcgaaactggttgaaataaacgtggttcaacctttttcaaccagaccacaatagaatcgg |
54217587 |
T |
|
| Q |
213 |
gatcaaacataccgaagaactggc |
236 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
54217588 |
gatcaaacataccgaagaactggc |
54217611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University