View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11187_high_1 (Length: 384)
Name: NF11187_high_1
Description: NF11187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11187_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 369; Significance: 0; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 41469475 - 41469847
Alignment:
| Q |
1 |
cggcttcgcgcttctcctctgccaatttcctgctttcatgcctcaagtcactcatcattaccaaattcttctttgctgttttcttcaattcatcattttt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
41469475 |
cggcttcgcgcttctcctctgccaatttcctgctttcatgcctcaagtcactcatcattaccaaattcttctttgctgtttccttcaattcatcattttt |
41469574 |
T |
|
| Q |
101 |
aatcttaagtccatccaaagcatttttatcatctagccacttttcctttgacttcgtcaactccaaaaccttactctctaattcaccagacatttttctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41469575 |
aatcttaagtccatccaaagcatttttatcatctagccacttttcctttgacttcgtcaactccaaaaccttactctctaattcaccagacatttttctt |
41469674 |
T |
|
| Q |
201 |
aattcacccaattcaatgtcatcttcctcccattttttcttaatcttgtttaactctaaaacttcatcctctaattcaacaatctttgttcttattacat |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41469675 |
aattcacccaattcaatgtcatcttcctcccattttttcttaatcttgtttaactctaaaacttcatcctctaattcaacaatctttgttcttattacat |
41469774 |
T |
|
| Q |
301 |
caacttcattgctactatcaacacatttctccttcaaattcttaatttcaacctccaattcattgttcttctt |
373 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41469775 |
caacttcattgctactatcaacacatttctccttcaaattcttaatttcaacctccaattcattgttcttctt |
41469847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 171 - 311
Target Start/End: Complemental strand, 41702975 - 41702835
Alignment:
| Q |
171 |
ttactctctaattcaccagacatttttcttaattcacccaattcaatgtcatcttcctcccattttttcttaatcttgtttaactctaaaacttcatcct |
270 |
Q |
| |
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||||||| |||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||| | ||| || ||||| |||||||||| || |
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| T |
41702975 |
ttactctgtaattcaccaatcatttttcttaacacacccaattcaatatcatcttcctcccattttttctttaacttcttcaactccaaaacttcattct |
41702876 |
T |
|
| Q |
271 |
ctaattcaacaatctttgttcttattacatcaacttcattg |
311 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||| |
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| T |
41702875 |
ctaattcaacaatctttcttcttaacacatcaacttcattg |
41702835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 270 - 373
Target Start/End: Original strand, 41499658 - 41499761
Alignment:
| Q |
270 |
tctaattcaacaatctttgttcttattacatcaacttcattgctactatcaacacatttctccttcaaattcttaatttcaacctccaattcattgttct |
369 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||||||||||| ||||||| |||||||||||||||| ||| ||||||||| | ||||||||||| |
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| T |
41499658 |
tctaattcaacaatctttgttcttaacacaccaacttcattgctaccatcaacaagtttctccttcaaattcataacttcaacctctagttcattgttct |
41499757 |
T |
|
| Q |
370 |
tctt |
373 |
Q |
| |
|
|||| |
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|
| T |
41499758 |
tctt |
41499761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 91
Target Start/End: Complemental strand, 41703070 - 41702983
Alignment:
| Q |
4 |
cttcgcgcttctcctctgccaatttcctgctttcatgcctcaagtcactcatcattaccaaattcttctttgctgttttcttcaattc |
91 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||| |||||| ||| ||||| || |||||||||||||| |||||| || |||||| |
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|
| T |
41703070 |
cttcgcacttctcctctgtcaatttcctgctttcattcctcaactcattcatcgttgccaaattcttctttactgtttcctccaattc |
41702983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 297 - 373
Target Start/End: Original strand, 41504115 - 41504191
Alignment:
| Q |
297 |
acatcaacttcattgctactatcaacacatttctccttcaaattcttaatttcaacctccaattcattgttcttctt |
373 |
Q |
| |
|
||||||| |||||| |||| |||||||||||||||||| ||||| | || ||| | |||||||||| |||||||||| |
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|
| T |
41504115 |
acatcaagttcattcctaccatcaacacatttctcctttaaattttcaacttctaactccaattcactgttcttctt |
41504191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 252 - 371
Target Start/End: Original strand, 41515449 - 41515568
Alignment:
| Q |
252 |
aactctaaaacttcatcctctaattcaacaatctttgttcttattacatcaacttcattgctactatcaacacatttctccttcaaattcttaatttcaa |
351 |
Q |
| |
|
||||| |||| |||| |||||||||| || ||||| |||||| |||| || ||||||||||| ||||| ||||||||||||||| || | || ||| | |
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| T |
41515449 |
aactccaaaatttcagactctaattcaccattctttcttcttaacacataaatttcattgctaccatcaaaacatttctccttcaacttttcaacttcta |
41515548 |
T |
|
| Q |
352 |
cctccaattcattgttcttc |
371 |
Q |
| |
|
||||||| ||| | |||||| |
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|
| T |
41515549 |
cctccaaatcaattttcttc |
41515568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 169
Target Start/End: Original strand, 33079998 - 33080040
Alignment:
| Q |
127 |
tatcatctagccacttttcctttgacttcgtcaactccaaaac |
169 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||||||||| |
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|
| T |
33079998 |
tatcatctagccacttttccttcaactttgtcaactccaaaac |
33080040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 131
Target Start/End: Original strand, 41499398 - 41499468
Alignment:
| Q |
61 |
ccaaattcttctttgctgttttcttcaattcatcatttttaatcttaagtccatccaaagcatttttatca |
131 |
Q |
| |
|
||||||||||||| ||||| |||||||||| || ||| ||||||||||||| ||||| |||| |||||| |
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|
| T |
41499398 |
ccaaattcttcttcattgtttccttcaattcaccagtttcaatcttaagtccagccaaatcattcttatca |
41499468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 131
Target Start/End: Original strand, 41503591 - 41503661
Alignment:
| Q |
61 |
ccaaattcttctttgctgttttcttcaattcatcatttttaatcttaagtccatccaaagcatttttatca |
131 |
Q |
| |
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||||||||||||| ||||| |||||||||| || ||||||||||||| || ||||| ||||||||||| |
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| T |
41503591 |
ccaaattcttcttcattgtttccttcaattcaccagttttaatcttaaggtcagccaaatcatttttatca |
41503661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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