View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11187_low_2 (Length: 303)
Name: NF11187_low_2
Description: NF11187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11187_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 21 - 297
Target Start/End: Original strand, 41469199 - 41469481
Alignment:
| Q |
21 |
gagcagcctcgtcaacaacgacatttatgaactcatcatcaccagcat------cctcgttctcttcaaaactatcagccataggaacatcttgttcctc |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41469199 |
gagcagcctcgtcaacaacgacatttatgaactcatcatcaccagcattctcatcctcgttctcttcaaaactatcagccataggaacatcttgttcctc |
41469298 |
T |
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| Q |
115 |
atcctcttgctcgctctcttcaaaactaggaaccattggatcagcagaagggtcctcctcaatgttgccaccaatagaggcatctaagcccgacaaaaga |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41469299 |
atcctcttgctcgctctcttcaaaactaggaaccattggatccgcagaagggtccccctcaatgttgccaccaatagaggcatctaagcccgacaaaaga |
41469398 |
T |
|
| Q |
215 |
atgagatcttcctccaacgttgttactctttcacgcagtcgaataaacttcctcttcaaagcctcaagtaatgtctctgcttc |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
41469399 |
atgagatcttcctccaacgttgttactctttcacgcagtcgaataaacttcctcttcaaagcctcaagtaatgtctcggcttc |
41469481 |
T |
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