View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11188_high_7 (Length: 240)
Name: NF11188_high_7
Description: NF11188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11188_high_7 |
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| [»] scaffold0256 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 16873903 - 16874126
Alignment:
| Q |
1 |
tgtagtacccttcctaaatcctttatatgctttgtgaaaattgtaaatttacagattcattttttgcatcatctaacaatctcactctgtcttcaattct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16873903 |
tgtagtacccttcctaaatcctttatatgctttgtgaaaattgtaaatttacagattcattttttgcatcatctaacaatctcactctgtcttcaattct |
16874002 |
T |
|
| Q |
101 |
tatagtcttcaattctcaagttttctttcatttgaatcatcatattcaattgagtacatctcttttgtaaattgttgcttagctaagcatgtgtttattt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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|
| T |
16874003 |
tatagtcttcaattctcaagttttctttcatttgaatcatcatattcaattgagtacatctcttttgtaatttgttgcttagctaagcatgcgtttattt |
16874102 |
T |
|
| Q |
201 |
aacataacaattaactctttattt |
224 |
Q |
| |
|
||| |||||||||||||||||||| |
|
|
| T |
16874103 |
aacgtaacaattaactctttattt |
16874126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 16580042 - 16580266
Alignment:
| Q |
1 |
tgtagtacccttcctaaatcctttatatgctttgt-gaaaattgtaaatttacagattcattttttgcatcatctaacaatctcactctgtcttcaattc |
99 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||| |||| |
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|
| T |
16580042 |
tgtagtacccttcctaaatcctttatttgctttgttgaaaattgtaaatttacatattcattttatgcatcttctaacaatctcactctgtcttcgattc |
16580141 |
T |
|
| Q |
100 |
ttatagtcttcaattctcaagttttctttcatttgaatcatcatattcaattgagtacatctcttttgtaaattgttgcttagctaagcatgtgtttatt |
199 |
Q |
| |
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||| |||| |||||| | | ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||| ||||||| |
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|
| T |
16580142 |
ttacagtcctcaattattatgttttctttcatttgaatcatcatattcacttgagtacatctcttttgtaatttgttgctaagctaagcatgcgtttatt |
16580241 |
T |
|
| Q |
200 |
taacataacaattaactctttattt |
224 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
16580242 |
taacataacaattaactctttattt |
16580266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 16615338 - 16615114
Alignment:
| Q |
1 |
tgtagtacccttcctaaatcctttatatgctttgt-gaaaattgtaaatttacagattcattttttgcatcatctaacaatctcactctgtcttcaattc |
99 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||| |||| |
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|
| T |
16615338 |
tgtagtacccttcctaaatcctttatttgctttgttgaaaattgtaaatttacatattcattttatgcatcttctaacaatctcactctgtcttcgattc |
16615239 |
T |
|
| Q |
100 |
ttatagtcttcaattctcaagttttctttcatttgaatcatcatattcaattgagtacatctcttttgtaaattgttgcttagctaagcatgtgtttatt |
199 |
Q |
| |
|
||| |||| |||||| | | ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||| ||||||| |
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|
| T |
16615238 |
ttacagtcctcaattattatgttttctttcatttgaatcatcatattcacttgagtacatctcttttgtaatttgttgctaagctaagcatgcgtttatt |
16615139 |
T |
|
| Q |
200 |
taacataacaattaactctttattt |
224 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
16615138 |
taacataacaattaactctttattt |
16615114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 16572080 - 16572281
Alignment:
| Q |
1 |
tgtagtacccttcctaaatcctttatatgctttgt-gaaaattgtaaatttacagattcattttttgcatcatctaacaatctcactctgtcttcaattc |
99 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||| |
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|
| T |
16572080 |
tgtagtacccttcctaaatcctttacatgctttgttgaaaattgtaaatttacagattcattttttgcatcttctaataatctcactctgtcttcgattc |
16572179 |
T |
|
| Q |
100 |
ttatagtcttcaattctcaagttttctttcatttgaatcatcatattcaattgagtacatctcttttgtaaattgttgcttagctaagcatgtgtttatt |
199 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||| ||||||||||| ||||||| |
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|
| T |
16572180 |
ttatagtcttcaattattaagttttctttcatttgaatcatcatattcaattgagtaaatctcttttgcaatttgttgctaagctaagcatgcgtttatt |
16572279 |
T |
|
| Q |
200 |
ta |
201 |
Q |
| |
|
|| |
|
|
| T |
16572280 |
ta |
16572281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 16978008 - 16977898
Alignment:
| Q |
1 |
tgtagtacccttcctaaatcctttatatgctttgt-gaaaattgtaaatttacagattcattttttgcatcatctaacaatctcactctgtcttcaattc |
99 |
Q |
| |
|
||||||| |||||| ||||||||| |||| ||||| |||||||| |||||| ||||||||||||||| ||| |||| |||| ||||| |||||| || | |
|
|
| T |
16978008 |
tgtagtatccttccgaaatcctttgtatgatttgttgaaaattgaaaatttgcagattcattttttgtatcttctagcaatatcactttgtcttggatgc |
16977909 |
T |
|
| Q |
100 |
ttatagtcttc |
110 |
Q |
| |
|
|| |||||||| |
|
|
| T |
16977908 |
ttctagtcttc |
16977898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 16783497 - 16783416
Alignment:
| Q |
1 |
tgtagtacccttcctaaatcctttatatgctttg-tgaaaattgtaaatttacagattcattttttgcatcatctaacaatct |
82 |
Q |
| |
|
||||||| |||||||||||| || || || |||| |||||||||||||||| ||||||| ||||||| ||| |||||||||| |
|
|
| T |
16783497 |
tgtagtatccttcctaaatcatt-atttgatttgatgaaaattgtaaatttgcagattccttttttgtatctgctaacaatct |
16783416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 11676 - 11454
Alignment:
| Q |
1 |
tgtagtacccttcctaaatcctttatatgctttg-tgaaaattgtaaatttacagattcattttttgcatcatctaacaatctcactctgtcttcaattc |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||| |||| |
|
|
| T |
11676 |
tgtagtacccttcctaaatcctttatatgctttgatgaaaattgtaaatttacagattcatttttagcatcttctaacaatctcact--gtcttcgattc |
11579 |
T |
|
| Q |
100 |
ttatagtcttcaattctcaagttttctttcatttgaatcatcatattcaattgagtacatctcttttgtaaattgttgcttagctaagcatgtgtttatt |
199 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| | ||||||||| ||||||| |
|
|
| T |
11578 |
ttatagtcttcaattattaagttttctttcatttgaatcatcatattcaattgagtacatctcttttgtaattcgttgctaacctaagcatgcgtttatt |
11479 |
T |
|
| Q |
200 |
taacataacaattaactctttattt |
224 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
11478 |
taacataacaattaactctttattt |
11454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 84
Target Start/End: Original strand, 32792500 - 32792574
Alignment:
| Q |
11 |
ttcctaaatcctttatatgctttgt-gaaaattgtaaatttacagattcattttttgcatcatctaacaatctca |
84 |
Q |
| |
|
||||||||||||||||||| ||||| ||| ||||||||||| ||||||||||||||| ||| |||| |||||||| |
|
|
| T |
32792500 |
ttcctaaatcctttatatgatttgttgaatattgtaaatttgcagattcattttttgtatcttctagcaatctca |
32792574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 14535928 - 14536039
Alignment:
| Q |
1 |
tgtagtacccttcctaaatcctttatatgctttgtgaaaattgtaaatttacagattcattttttgcatcatctaacaatctcactctgtcttcaattct |
100 |
Q |
| |
|
||||||| ||||||| ||||||||||||| ||||| |||||||||| || || |||| |||||||||| || ||||||||||| |||||| || || |
|
|
| T |
14535928 |
tgtagtatccttcctgaatcctttatatgatttgttgaaattgtaaactt--agtttcaatttttgcatcttcacacaatctcactttgtcttggatgct |
14536025 |
T |
|
| Q |
101 |
tatagtcttcaatt |
114 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
14536026 |
tctagtcttcaatt |
14536039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 93
Target Start/End: Original strand, 21628765 - 21628849
Alignment:
| Q |
11 |
ttcctaaatccttt-atatgctttgt-gaaaattgtaaatttacagattcattttttgcatcatctaacaatctcactctgtctt |
93 |
Q |
| |
|
|||||||||||||| ||||| ||||| ||| ||||||||||| ||||||||||||| ||| || | |||||||||| |||||| |
|
|
| T |
21628765 |
ttcctaaatccttttatatgatttgttgaatattgtaaatttgtagattcattttttatatcttccagcaatctcactttgtctt |
21628849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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