View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11188_low_1 (Length: 418)
Name: NF11188_low_1
Description: NF11188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11188_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 4e-88; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 209 - 402
Target Start/End: Complemental strand, 820514 - 820321
Alignment:
| Q |
209 |
aatctttatctttaattgattaaagccttttcctttttagggtttttgagtttgtggcactaatttcaggtaatggtgaatcctgatgcaccaagcccta |
308 |
Q |
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| T |
820514 |
aatctttatctttaattgattaaagccttttcctttttagggtttttgagtttgtggcactaatttcaggtaatggtgaatcctgatgcaccaagcccta |
820415 |
T |
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| Q |
309 |
gtaacccgaatatcagggaatacctgtattggtaagtgggaactacccatatgggtatgtcaaatannnnnnncataattaaaatatttgttaa |
402 |
Q |
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| T |
820414 |
gtagcccgaatatcagggaatacctgtattggtaagtgggaactacccatatgggtatgttaaatatttttttcataattaaaatatttgttaa |
820321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 148 - 362
Target Start/End: Complemental strand, 817220 - 817010
Alignment:
| Q |
148 |
accttacctccatacaaattaaacctaattgggatcagtcttaatagcaactgctacgtaaaatctttatctttaattgattaaagccttttccttttta |
247 |
Q |
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| T |
817220 |
accttacctccatacaaattaaacttagttgggatcattcttaataacaattgccacgtaaaatctttaa--ttgatt-atttaagctattt--tttcta |
817126 |
T |
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| Q |
248 |
gggtttttgagtttgtggcactaattt-caggtaatggtgaatcctgatgcaccaagccctagtaacccgaatatcagggaatacctgtattggtaagtg |
346 |
Q |
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| T |
817125 |
gggtttttgagtttgtggcactaattttcaggtgatggtgaatcctgatgcaccaagccctagtgacccgaatatgagggaatacctgtattggtaagtc |
817026 |
T |
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| Q |
347 |
ggaactacccatatgg |
362 |
Q |
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| T |
817025 |
ggaactatccatatgg |
817010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 272 - 350
Target Start/End: Complemental strand, 775942 - 775864
Alignment:
| Q |
272 |
tttcaggtaatggtgaatcctgatgcaccaagccctagtaacccgaatatcagggaatacctgtattggtaagtgggaa |
350 |
Q |
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| T |
775942 |
tttcaggtgatggtggaccctgatggaccaagccctagtaaccctaatatgagggaatacctgcattggtaagtgggaa |
775864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 272 - 350
Target Start/End: Original strand, 8459466 - 8459544
Alignment:
| Q |
272 |
tttcaggtaatggtgaatcctgatgcaccaagccctagtaacccgaatatcagggaatacctgtattggtaagtgggaa |
350 |
Q |
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| T |
8459466 |
tttcaggtgatggtggaccctgatggaccaagccctagtaaccctaatatgagggaatacctgcattggtaagtgggaa |
8459544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 143
Target Start/End: Complemental strand, 817355 - 817273
Alignment:
| Q |
54 |
aaagaagattgtaaaattaatgtcagccacctccaacaccctt-gaaatgaaaataaaaaacagttagaaaaattcacatctaataaacaa |
143 |
Q |
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| T |
817355 |
aaagaagattgtaaaattaa------ccacctccaacacccttagaaat--aaaaaccaaacagttaggaaaattcacatctaataaacaa |
817273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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