View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11188_low_4 (Length: 308)
Name: NF11188_low_4
Description: NF11188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11188_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 47807331 - 47807620
Alignment:
| Q |
1 |
atgtactttaaatgattgatcatgtctcccctttaacatttaggtgttcaacgtgatagaatgcctaatagaagactccgggaagttgacttcatgccta |
100 |
Q |
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| T |
47807331 |
atgtactttaaatgattgatcatttctcttgtttaacttttaggtgttcaacatgatgaaatgtctaatggaatactcttgcaagtttccttcatgccta |
47807430 |
T |
|
| Q |
101 |
aagctatttccatttctgagctctctgatgatgatttcacagaggtacatctaaataatttgcagtgaaactatattttcctggaatacatattaattgt |
200 |
Q |
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| T |
47807431 |
aagctatttccatttctgagctctctgatgatgatttcacagaggtacatctaaataatttgcagtgaaactatattttcctggaatacatattaattgt |
47807530 |
T |
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| Q |
201 |
cttgttttactgacagcaagaatgcgaggatttgcggcaaaaagtgaacactggcttgttaccgaaaataactgttgtaagttgtatgat |
290 |
Q |
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| T |
47807531 |
cttgttttactgacagcaagaatgcgaggatttgcggcaaaaagtgaatactggcttgtttccgaaaataactgttgtaagttgtatgat |
47807620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 47804769 - 47805059
Alignment:
| Q |
1 |
atgtactttaaatgattgatcatgtctcccctttaacatttaggtgttcaacgtgatagaatgcctaatagaagactccgggaagttgacttcatgccta |
100 |
Q |
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||||||||||||||||||||||| |||| |||||| |||||||||||||| |||| |||| ||||| ||| |||| | ||||| ||||||||||| |
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| T |
47804769 |
atgtactttaaatgattgatcatttctcttgtttaacttttaggtgttcaacatgatcaaatgtctaatggaatactcttgcaagtttccttcatgccta |
47804868 |
T |
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| Q |
101 |
aagctatttccatttctgagctctctgatgatgatttcacagaggtacatctaaataatttgcagtgaaacta-tattttcctggaatacatattaattg |
199 |
Q |
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||||||||||||| ||||||||||| ||||| |||||||||||||||| | ||||||||||||||||||| || |||| ||||||||||| ||||||||| |
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| T |
47804869 |
aagctatttccatctctgagctctccgatgaagatttcacagaggtacgtgtaaataatttgcagtgaaaatattattatcctggaatacgtattaattg |
47804968 |
T |
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| Q |
200 |
tcttgttttactgacagcaagaatgcgaggatttgcggcaaaaagtgaacactggcttgttaccgaaaataactgttgtaagttgtatgat |
290 |
Q |
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| T |
47804969 |
tgttgttttacttacagcaagattgtgaggatttacggaaaaaagtgaaaactggattgctcccaaaattaactgttgtaagttgtatgat |
47805059 |
T |
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