View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11188_low_9 (Length: 230)
Name: NF11188_low_9
Description: NF11188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11188_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 47807439 - 47807234
Alignment:
| Q |
1 |
aaatagctttaggcatgaaggaaacttgcaagagtattccattagacatttcatcatgttgaacacctaaaagttaaacgagagaaatgatcaatcattt |
100 |
Q |
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| T |
47807439 |
aaatagctttaggcatgaaggaaacttgcaagagtattccattagacatttcatcatgttgaacacctaaaagttaaacaagagaaatgatcaatcattt |
47807340 |
T |
|
| Q |
101 |
aaagtacatacatagaaccaaatattgagaaatataaatttaaagtagtgttaaaaagctagcaagatctatatgcaatttattatacctatgactctca |
200 |
Q |
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| T |
47807339 |
aaagtacatacatagaaccaaatattgagaaata------taaagtagcgttaaaaagctagcaagatctatatgcaatttattatacctatgactctca |
47807246 |
T |
|
| Q |
201 |
caagatggtatg |
212 |
Q |
| |
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|||||||||||| |
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| T |
47807245 |
caagatggtatg |
47807234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 47804877 - 47804672
Alignment:
| Q |
1 |
aaatagctttaggcatgaaggaaacttgcaagagtattccattagacatttcatcatgttgaacacctaaaagttaaacgagagaaatgatcaatcattt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
47804877 |
aaatagctttaggcatgaaggaaacttgcaagagtattccattagacatttgatcatgttgaacacctaaaagttaaacaagagaaatgatcaatcattt |
47804778 |
T |
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| Q |
101 |
aaagtacatacatagaaccaaatattgagaaatataaatttaaagtagtgttaaaaagctagcaagatctatatgcaatttattatacctatgactctca |
200 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47804777 |
aaagtacatacatagaaccaaatattgagaaata------taaagtagcgttaaaaagctagcaagatctatatgcaatttattatacctatgactctca |
47804684 |
T |
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| Q |
201 |
caagatggtatg |
212 |
Q |
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|||||||||||| |
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| T |
47804683 |
caagatggtatg |
47804672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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