View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11189_high_1 (Length: 597)
Name: NF11189_high_1
Description: NF11189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11189_high_1 |
 | |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 557; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 17 - 589
Target Start/End: Complemental strand, 28608301 - 28607729
Alignment:
| Q |
17 |
aataactgctgatgttaaaacaacataggttggtggagtaataatctgaaatgacacattataacaaatcaaaaattaaacatttataattttgaagtgt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28608301 |
aataactgctgatgttaaaacaacataggttggtggagtaataatctgaaatgacacattataacaaatcaaaaattaaacatttataattttgaagtgt |
28608202 |
T |
|
| Q |
117 |
gagttattaaaaaaggtagtaaataataattttcaagtagatcaataccattctatcccatgaaatgttgagcattattaatgcaacgacaccctttgta |
216 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28608201 |
gagttattaaaaaagggagtaaataataattttcaagtagatcaataccattctatcccatgaaatgttgagcattattaatgcaacgacaccctttgta |
28608102 |
T |
|
| Q |
217 |
ttgagaagcaagcctaaagcaaaaccatctcgagtacgcatgccaaacaagaaagtggaaaacaaagtgcttagaatctttagaacacacatcaagagta |
316 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28608101 |
ttgagaagcaagcctaaagcaaaaccatctcgagtacgcatgccaaacaagaaagtggaaaacaaagtgcttagaatctttagaacacacatcaagagta |
28608002 |
T |
|
| Q |
317 |
taatgataagtgtaaagggccaacttggttgatagaaaacgggcacgaacatgagtttcaatccacttccaataaagtaaattggtgctagaaacccacc |
416 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
28608001 |
taatgataagtgtaaagggccaacttggttgatagaaaacgggcacgaacatgagtttcaatccactgccaataaagtaaattggtgctagaaacccacc |
28607902 |
T |
|
| Q |
417 |
accaaaatcattagtcattgatgtgaccatgtcagcaaatttaccatgaggtaaaatcaacccgtatacaaatgcaccaacaacgtcatgtgtaccaaga |
516 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28607901 |
accaaaatcattagtcattgatgtgaccatgtcagcaaatttaccgtgaggtaaaatcaacccgtatacaaatgcaccaacaacgtcatgtgtaccaaga |
28607802 |
T |
|
| Q |
517 |
atatctgttatgtatgagaaaacaaaaagtcccatcaccacaaagactaattggttaccatcccattcatctc |
589 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28607801 |
atatcagttatgtatgagaaaacaaaaagtcccatcaccacaaagactaattggttaccatcccattcatctc |
28607729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 167 - 303
Target Start/End: Original strand, 7589432 - 7589567
Alignment:
| Q |
167 |
ttctatcccatgaaatgttgagcattattaatgcaacgacaccctttgtattgagaagcaagcctaaagcaaaaccatctcgagtacgcatgccaaacaa |
266 |
Q |
| |
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|||||||||| ||||||||||||||| || ||| ||||||| || ||||| ||||||||| ||||||||||||||||| || ||| | |||||| || |
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| T |
7589432 |
ttctatcccaatcaatgttgagcattatcaacgcagcgacacctttagtattaagaagcaagtctaaagcaaaaccatct-gaacacgtacgccaaaaaa |
7589530 |
T |
|
| Q |
267 |
gaaagtggaaaacaaagtgcttagaatctttagaaca |
303 |
Q |
| |
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|||| ||| |||||||||| ||||||||||| ||||| |
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| T |
7589531 |
gaaactggcaaacaaagtgtttagaatcttttgaaca |
7589567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 404 - 589
Target Start/End: Original strand, 7589668 - 7589852
Alignment:
| Q |
404 |
ctagaaacccaccaccaaaatcattagtcattgatgtgaccatgtcagcaaatttaccatgaggtaaaatcaacccgtatacaaatgcaccaacaacgtc |
503 |
Q |
| |
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|||||||| |||||||||||||||| ||| |||| ||||||||||||||||| |||| || ||||||||||||| ||| | | |||||||||| || |
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| T |
7589668 |
ctagaaacacaccaccaaaatcattggtcgttgacgtgaccatgtcagcaaa-ttactgtgtggtaaaatcaaccggtacattgaagcaccaacaatgtt |
7589766 |
T |
|
| Q |
504 |
atgtgtaccaagaatatctgttatgtatgagaaaacaaaaagtcccatcaccacaaagactaattggttaccatcccattcatctc |
589 |
Q |
| |
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| |||| || ||||||| |||||||| ||| | ||||| |||||| |||||||||| |||||||| ||| ||||| ||||| |
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| T |
7589767 |
aggtgtgccgagaatatatgttatgtgggagcgataaaaaattcccatgaccacaaagagatattggttatcattccattaatctc |
7589852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 228; Significance: 1e-125; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 20 - 589
Target Start/End: Original strand, 438606 - 439174
Alignment:
| Q |
20 |
aactgctgatgttaaaacaacataggttggtggagtaataatctgaaatgacacattataacaaatcaaaaattaaacattt-ataattttgaagtgtga |
118 |
Q |
| |
|
|||||| || ||||||||| |||| |||||||||| || ||||| || |||||||| ||||||||| ||| ||| ||| |||||||||| || | |
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| T |
438606 |
aactgcagaggttaaaacagcatatgttggtggagaaagaatctacaaatacacattag--caaatcaaagattgaactttttataattttgacgttagc |
438703 |
T |
|
| Q |
119 |
gttattaaaaaaggtagtaaataataattttcaagtagatcaataccattctatcccatgaaatgttgagcattattaatgcaacgacaccctttgtatt |
218 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||| | ||||||||||||||| ||||| |
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| T |
438704 |
gttattaaaaaagggagtaaataataattttcaagtagatcaataccgatctatcccaggaaatattgagcattatcagtgcaacgacacccttggtatt |
438803 |
T |
|
| Q |
219 |
gagaagcaagcctaaagcaaaaccatctcgagtacgcatgccaaacaagaaagtggaaaacaaagtgcttagaatctttagaacacacatcaagagtata |
318 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||| |||||||||||| |||||||||| |||||||||||||| ||||||| ||||||||| |||||||||| |
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|
| T |
438804 |
gagaagcaagcctagagcaaaaccatcttgagcacgcatgccaaagaagaaagtggcaaacaaagtgcttaaaatctttggaacacacaacaagagtata |
438903 |
T |
|
| Q |
319 |
atgataagtgtaaagggccaacttggttgatagaaaacgggcacgaacatgagtttcaatccacttccaataaagtaaattggtgctagaaacccaccac |
418 |
Q |
| |
|
|||||||||||| ||| ||| |||| ||| |||||| || | ||||||||| ||||| | ||| |||||| || ||||| ||||| ||| || |
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| T |
438904 |
atgataagtgtataggcacaatttggctgaaagaaaatggttttcaccatgagttttgatccattgccacaaaagtagatcggtgcaagaaagccaatac |
439003 |
T |
|
| Q |
419 |
caaaatcattagtcattgatgtgaccatgtcagcaaatttaccatgaggtaaaatcaacccgtatacaaatgcaccaacaacgtcatgtgtaccaagaat |
518 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||| || |||||||| |||||||| |||||| | |
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|
| T |
439004 |
caaaatcattagtcattgacacgaccatgtcagcaaatttaccgtgaggtaaaatcaacccgtataaaaaagccccaacaacatcatgtgtgccaagagt |
439103 |
T |
|
| Q |
519 |
atctgttatgtatgagaaaacaaaaagtcccatcaccacaaagactaattggttaccatcccattcatctc |
589 |
Q |
| |
|
||| | |||| |||||||||| | ||| ||||| | ||||| |||| ||||||| ||||||||||||||| |
|
|
| T |
439104 |
atcggctatgaatgagaaaaccataaggcccataaagacaaaaactagttggttagcatcccattcatctc |
439174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 5e-36; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 400 - 589
Target Start/End: Complemental strand, 13659293 - 13659104
Alignment:
| Q |
400 |
ggtgctagaaacccaccaccaaaatcattagtcattgatgtgaccatgtcagcaaatttaccatgaggtaaaatcaacccgtatacaaatgcaccaacaa |
499 |
Q |
| |
|
|||||||||||||| || | |||||||| ||||| || ||||| || |||||||||||||| |||||||||||||||||||| ||||| || ||||||| |
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| T |
13659293 |
ggtgctagaaacccgccgcaaaaatcatcagtcagtgtagtgacgatatcagcaaatttaccgtgaggtaaaatcaacccgtacacaaaagccccaacaa |
13659194 |
T |
|
| Q |
500 |
cgtcatgtgtaccaagaatatctgttatgtatgagaaaacaaaaagtcccatcaccacaaagactaattggttaccatcccattcatctc |
589 |
Q |
| |
|
||| ||||| |||||||||||||||||| ||||| ||||||||| |||||||| | ||||| ||||| ||| | | ||||||||||| |
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|
| T |
13659193 |
tgtcttgtgttccaagaatatctgttatgcatgagcaaacaaaaatccccatcacaagaaagagtaattctttatcgttccattcatctc |
13659104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 406 - 589
Target Start/End: Complemental strand, 13651801 - 13651618
Alignment:
| Q |
406 |
agaaacccaccaccaaaatcattagtcattgatgtgaccatgtcagcaaatttaccatgaggtaaaatcaacccgtatacaaatgcaccaacaacgtcat |
505 |
Q |
| |
|
|||||| | |||||||| |||| ||||||||| |||||||| |||||||||||||||||||| |||||||||||||| ||||| || || |||| || | |
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|
| T |
13651801 |
agaaactcgccaccaaagtcatcagtcattgacgtgaccatatcagcaaatttaccatgaggcaaaatcaacccgtacacaaaagctccgacaatatctt |
13651702 |
T |
|
| Q |
506 |
gtgtaccaagaatatctgttatgtatgagaaaacaaaaagtcccatcaccacaaagactaattggttaccatcccattcatctc |
589 |
Q |
| |
|
|||| ||||||||| ||||||| |||||| ||||||| | ||||||| | ||||| |||||| ||| ||||||||||||||| |
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|
| T |
13651701 |
gtgtgccaagaatacctgttatatatgagcaaacaaacatccccatcagaagaaagagtaattgtttatcatcccattcatctc |
13651618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 182 - 338
Target Start/End: Complemental strand, 13652025 - 13651869
Alignment:
| Q |
182 |
tgttgagcattattaatgcaacgacaccctttgtattgagaagcaagcctaaagcaaaaccatctcgagtacgcatgccaaacaagaaagtggaaaacaa |
281 |
Q |
| |
|
||||||||||||| ||||||| | ||||||| |||||||||| || ||||| |||||||| ||| |||||||||||||||| || ||||||| |||||| |
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|
| T |
13652025 |
tgttgagcattatcaatgcaagggcacccttagtattgagaatcatgcctagagcaaaactgtcttgagtacgcatgccaaaaaataaagtggtaaacaa |
13651926 |
T |
|
| Q |
282 |
agtgcttagaatctttagaacacacatcaagagtataatgataagtgtaaagggcca |
338 |
Q |
| |
|
|||||||| ||||||| ||||||| | ||||| ||||| | |||||| |||||||| |
|
|
| T |
13651925 |
agtgcttaaaatctttggaacacataacaagattataagcacaagtgttaagggcca |
13651869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 30 - 344
Target Start/End: Complemental strand, 13659659 - 13659349
Alignment:
| Q |
30 |
gttaaaacaacataggttggtggagtaataatctgaaatgacacattataacaaatcaaaaattaaacatttataattttgaagtgtgagttattaaaaa |
129 |
Q |
| |
|
||||||||| ||| ||| ||||||| || |||||| |||||||||||||||||||||||| ||||| ||||||||||| | ||||| |||||||| |
|
|
| T |
13659659 |
gttaaaacagcatgggtgggtggagaaagaatctgcaatgacacattataacaaatcaaagtttaaattgatataattttgacttatgagtaattaaaaa |
13659560 |
T |
|
| Q |
130 |
aggta----gtaaataataattttcaagtagatcaataccattctatcccatgaaatgttgagcattattaatgcaacgacaccctttgtattgagaagc |
225 |
Q |
| |
|
|| |||||||||||| | |||||||| |||||||||| || ||||||||||||| | ||||| | |||||||||||||||||| | |
|
|
| T |
13659559 |
tcatatagagtaaataataatat--------atcaatacttttctatcccaagatgtgttgagcattatcagtgcaagggcaccctttgtattgagaatc |
13659468 |
T |
|
| Q |
226 |
aagcctaaagcaaaaccatctcgagtacgcatgccaaacaagaaagtggaaaacaaagtgcttagaatctttagaacacacatcaagagtataatgataa |
325 |
Q |
| |
|
| ||| | ||| |||| ||| |||||||||| ||||| |||||||| | |||||||||||||| |||||| ||||||| | ||||| |||||| | || |
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|
| T |
13659467 |
atgccgagagctaaactgtcttgagtacgcataccaaaaaagaaagtagcaaacaaagtgcttaaaatcttcggaacacataacaagattataataacaa |
13659368 |
T |
|
| Q |
326 |
gtgtaaagggccaacttgg |
344 |
Q |
| |
|
|||| ||||||||| |||| |
|
|
| T |
13659367 |
gtgttaagggccaagttgg |
13659349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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