View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11189_high_8 (Length: 212)
Name: NF11189_high_8
Description: NF11189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11189_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 5045876 - 5046077
Alignment:
| Q |
1 |
cccattcgacaactcccaagtaaaacaatgaagtaaatggaccaaagctaagtcgaaagcataaagggccaattgcatcccaaggcaagaccttcgacct |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||| | |||||||||||||||||| |
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| T |
5045876 |
cccattcgacaactcccaagtaaaacaacgaagtaaatggaccaaagctaagtcaaaagtataaagggccaattgcatgtcgaggcaagaccttcgacct |
5045975 |
T |
|
| Q |
101 |
gatccgaatggaataaactcaaaatgactttctttaaagtctggtacacttgaatttaaaaaccgcgaaggtctaaactcttccgaatcttcccatgagt |
200 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5045976 |
tacccgaatggaataaactcaaaatgactttctttaaagtctggtacacttgaatttaaaaaccgcgaaggtctaaactcttccgaatcttcccatgagt |
5046075 |
T |
|
| Q |
201 |
ct |
202 |
Q |
| |
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|| |
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| T |
5046076 |
ct |
5046077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 32312997 - 32313198
Alignment:
| Q |
1 |
cccattcgacaactcccaagtaaaacaatgaagtaaatggaccaaagctaagtcgaaagcataaagggccaattgcatcccaaggcaagaccttcgacct |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| |||||||||| || || ||||||||| |||||||||| ||| | |||||||||||||| |
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| T |
32312997 |
cccattcggcaactcccaagtaaaacaatgaagtaaatgtgccaaagctaaatccaacgcataaaggcccaattgcattccaggacaagaccttcgacca |
32313096 |
T |
|
| Q |
101 |
gatccgaatggaataaactcaaaatgactttctttaaagtctggtacacttgaatttaaaaaccgcgaaggtctaaactcttccgaatcttcccatgagt |
200 |
Q |
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|| ||||||||||||||||||||||||||| ||||||| |||||| ||||||||| |||||||||||||| ||||||||||| | ||||||||| |||| |
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| T |
32313097 |
gacccgaatggaataaactcaaaatgacttcctttaaaatctggtgcacttgaatccaaaaaccgcgaaggcctaaactcttctggatcttcccacgagt |
32313196 |
T |
|
| Q |
201 |
ct |
202 |
Q |
| |
|
|| |
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|
| T |
32313197 |
ct |
32313198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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