View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11189_low_3 (Length: 398)
Name: NF11189_low_3
Description: NF11189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11189_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 37403884 - 37404158
Alignment:
| Q |
1 |
gatcaaataaataaaaatagatgatataagcaatgcaagcattgaatatacaaataactaacatgtcattgtcatgtggggctgggttgattccttctgt |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37403884 |
gatcaaataaatacaaatagatgatataagcaatgcaggcattgaatatacaaataactaacatgtcattgtcatgtggggctgggttgattccttctgt |
37403983 |
T |
|
| Q |
101 |
tacataattttaaggtgactagttggctagggtgaaacacaatgaatgatacctctcatgtgataaggtcatcatccattgaaaatgagagagaaagaga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
37403984 |
tacataattttaaggtgactagttggctagggtgaaacacaatgaatgatacctctcatgtgataagatcatcatccattgaaaatgagagagaaagaga |
37404083 |
T |
|
| Q |
201 |
gtatacaatgaaatagaaatataaatgagattttaaggatagagatttcagaaacatgagagaacgtggaaaaaa |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37404084 |
gtatacaatgaaatagaaatataaatgagattttaaggatagagatttcagaaacatgagagaacgtggaaaaaa |
37404158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 280 - 382
Target Start/End: Original strand, 37404267 - 37404367
Alignment:
| Q |
280 |
gaaaagaaaatgagatttaagggtggagttttagacacatgagagagagatgagaatacattatcataaaatgggaatggatcatctcatgtgacatgat |
379 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37404267 |
gaaaagaaaatgagatttaagggtggagttttagacacgtgaga--gagatgagaatacattatcataaaatgggaatggatcatctcatgtgacatgat |
37404364 |
T |
|
| Q |
380 |
ggt |
382 |
Q |
| |
|
||| |
|
|
| T |
37404365 |
ggt |
37404367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University