View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11189_low_4 (Length: 388)

Name: NF11189_low_4
Description: NF11189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11189_low_4
NF11189_low_4
[»] chr8 (18 HSPs)
chr8 (19-388)||(36199148-36199517)
chr8 (236-388)||(36213456-36213608)
chr8 (108-388)||(36197002-36197293)
chr8 (236-388)||(36202555-36202707)
chr8 (254-373)||(36208042-36208161)
chr8 (254-388)||(36184843-36184977)
chr8 (252-388)||(36201170-36201306)
chr8 (253-388)||(36210114-36210249)
chr8 (173-233)||(36214872-36214932)
chr8 (319-388)||(36188681-36188750)
chr8 (173-233)||(36188805-36188865)
chr8 (173-233)||(36210286-36210346)
chr8 (108-233)||(36202727-36202852)
chr8 (108-233)||(36208199-36208324)
chr8 (175-233)||(36185015-36185073)
chr8 (173-217)||(36213650-36213694)
chr8 (343-386)||(36183441-36183484)
chr8 (173-233)||(36201342-36201400)


Alignment Details
Target: chr8 (Bit Score: 346; Significance: 0; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 19 - 388
Target Start/End: Complemental strand, 36199517 - 36199148
Alignment:
Q  19 gtttggcacttttatagcaagaacagattatggaatatattgcagggacttattttccggacatttacattcctaacaatgatagggttaaggagaaaat 118  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36199517 gtttggcacttttatagcaagaacagattatagaagatattgcaggggcttattttccggacatttacattcctaacaatgatagggttaaggagaaaat 36199418  T
Q  119 ttaatcggactatgtggtctagataaaagagtcaaggcttgtatgaaaaccgtcataagaagagccgagacagatctattgttccaaaagattgtcacaa 218  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  36199417 ttaatcggactatgtggtctagataaaagagtcaaggcttatatgaaaaccgtcataagaagagccgagagagatcaattgttccaaaagattgtcacaa 36199318  T
Q  219 caactgtgacaaagatgtcaaacactaatcggggatgcaataggtctgaattttgatgatacgacagatatagctgaatctacttgttgcatgtgttttg 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36199317 caactgtgacaaagatgtcaaacactaatcggggatgcaataggtctgaattttgatgatacgacagatatagctgaatctacttgttgcatgtgttttg 36199218  T
Q  319 ttaataataaaagattgacaactacagaaagagctcttcttctgtgtgctaagatgaaagagctgcaaac 388  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36199217 ttaataataaaagattgacaactacagaaagagctcttcttctgtgtgctaagatgaaagagctgcaaac 36199148  T

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Target: chr8; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 236 - 388
Target Start/End: Complemental strand, 36213608 - 36213456
Alignment:
Q  236 tcaaacactaatcggggatgcaataggtctgaattttgatgatacgacagatatagctgaatctacttgttgcatgtgttttgttaataataaaagattg 335  Q
    |||||||| ||| || |||||||||||||| |||||| |||||| ||   || |||| ||||| ||||||||||||||||||| ||||| ||||| | ||    
T  36213608 tcaaacacaaattggtgatgcaataggtctcaattttaatgataagatgaatgtagccgaatcaacttgttgcatgtgttttggtaatagtaaaacagtg 36213509  T
Q  336 acaactacagaaagagctcttcttctgtgtgctaagatgaaagagctgcaaac 388  Q
    |||||| |||||||||||| |||| | ||||||||||||||||||||||||||    
T  36213508 acaactgcagaaagagctcatcttatttgtgctaagatgaaagagctgcaaac 36213456  T

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Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 108 - 388
Target Start/End: Complemental strand, 36197293 - 36197002
Alignment:
Q  108 aaggagaaaatttaatcggactatgtggtctagataaaagagtcaaggcttgtatgaaaaccgtcataagaagagccgagacagatctattgttccaaaa 207  Q
    ||||||||||| | || ||| ||||||| | ||| ||||||||||||  || |   ||||| |  ||||||||||| |||| ||||| ||| ||||||||    
T  36197293 aaggagaaaatatcattggattatgtgggccagaaaaaagagtcaagcattctgcaaaaacagctataagaagagctgagagagatcaattattccaaaa 36197194  T
Q  208 gattgtcacaacaactgtgacaaagatg-----------------tcaaacactaatcggggatgcaataggtctgaattttgatgatacgacagatata 290  Q
    |||||||||| ||||||||||||||| |                 |||||||||||| || ||||||||||      |||||||||||| ||| |||  |    
T  36197193 gattgtcacagcaactgtgacaaagaagccagacattacaaagattcaaacactaattggtgatgcaatag------attttgatgataagacggatcca 36197100  T
Q  291 gctgaatctacttgttgcatgtgttttgttaataataaaagattgacaactacagaaagagctcttcttctgtgtgctaagatgaaagagctgcaaac 388  Q
    |||||||| ||||||||||||| ||||| |||||  |||||| || ||||| |||||||||||| |||| ||||||||||||||||||||||||||||    
T  36197099 gctgaatcaacttgttgcatgttttttggtaatagaaaaagaatggcaactgcagaaagagctcatcttttgtgtgctaagatgaaagagctgcaaac 36197002  T

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Target: chr8; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 236 - 388
Target Start/End: Complemental strand, 36202707 - 36202555
Alignment:
Q  236 tcaaacactaatcggggatgcaataggtctgaattttgatgatacgacagatatagctgaatctacttgttgcatgtgttttgttaataataaaagattg 335  Q
    |||||||| ||| || ||||||||| |||||||||||||||||| ||  ||| ||||||||||  | |||||||||| ||  | |||||| |||||| |     
T  36202707 tcaaacacaaattggtgatgcaatatgtctgaattttgatgataagattgatctagctgaatcatcctgttgcatgtcttacggtaataacaaaagaata 36202608  T
Q  336 acaactacagaaagagctcttcttctgtgtgctaagatgaaagagctgcaaac 388  Q
    | |||| |||||||||||||||| ||||||||||||||||| |||||||||||    
T  36202607 agaactgcagaaagagctcttctactgtgtgctaagatgaaggagctgcaaac 36202555  T

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Target: chr8; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 254 - 373
Target Start/End: Complemental strand, 36208161 - 36208042
Alignment:
Q  254 tgcaataggtctgaattttgatgatacgacagatatagctgaatctacttgttgcatgtgttttgttaataataaaagattgacaactacagaaagagct 353  Q
    |||||||||||||||||||||||||| ||  ||| || ||||| |  |||||||| |||||| || |||||| |||||| |||||||| |||||||||||    
T  36208161 tgcaataggtctgaattttgatgataagatcgatctatctgaaacatcttgttgcgtgtgttatggtaataacaaaagaatgacaactgcagaaagagct 36208062  T
Q  354 cttcttctgtgtgctaagat 373  Q
    ||||||||||||||||||||    
T  36208061 cttcttctgtgtgctaagat 36208042  T

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Target: chr8; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 254 - 388
Target Start/End: Complemental strand, 36184977 - 36184843
Alignment:
Q  254 tgcaataggtctgaattttgatgatacgacagatatagctgaatctacttgttgcatgtgttttgttaataataaaagattgacaactacagaaagagct 353  Q
    |||||||||||||||||||||||||| ||  ||| || ||||| |  |||||||| |||||| || |||||| |||||| |||||||| |||||||||||    
T  36184977 tgcaataggtctgaattttgatgataagatcgatctatctgaaacatcttgttgcgtgtgttatggtaataacaaaagaatgacaactgcagaaagagct 36184878  T
Q  354 cttcttctgtgtgctaagatgaaagagctgcaaac 388  Q
    ||||||||||| |||||||| || || ||||||||    
T  36184877 cttcttctgtgcgctaagataaaggaactgcaaac 36184843  T

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Target: chr8; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 252 - 388
Target Start/End: Complemental strand, 36201306 - 36201170
Alignment:
Q  252 gatgcaataggtctgaattttgatgatacgacagatatagctgaatctacttgttgcatgtgttttgttaataataaaagattgacaactacagaaagag 351  Q
    |||||||||||||| |||||| |||||| ||| ||   |||  |||| ||||||||||||||||||| ||||| ||||||| |||||||| |||| ||||    
T  36201306 gatgcaataggtctcaattttaatgatatgacggaggcagcaaaatcaacttgttgcatgtgttttggtaatagtaaaagaatgacaactgcagatagag 36201207  T
Q  352 ctcttcttctgtgtgctaagatgaaagagctgcaaac 388  Q
    ||| |||| | |||||||||||||| |||||||||||    
T  36201206 ctcatcttatttgtgctaagatgaaggagctgcaaac 36201170  T

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Target: chr8; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 253 - 388
Target Start/End: Complemental strand, 36210249 - 36210114
Alignment:
Q  253 atgcaataggtctgaattttgatgatacgacagatatagctgaatctacttgttgcatgtgttttgttaataataaaagattgacaactacagaaagagc 352  Q
    ||||||||||||| |||||| |||||| |||  || |||| | ||| ||| |||||| | |||||| ||||| ||||||| ||| |||| ||||||||||    
T  36210249 atgcaataggtctcaattttaatgataagacgtatgtagccgtatcaactggttgcacgcgttttggtaatagtaaaagaatgataactgcagaaagagc 36210150  T
Q  353 tcttcttctgtgtgctaagatgaaagagctgcaaac 388  Q
    |  |||||| ||||||||||||||||||||||||||    
T  36210149 tgatcttctttgtgctaagatgaaagagctgcaaac 36210114  T

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Target: chr8; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 173 - 233
Target Start/End: Complemental strand, 36214932 - 36214872
Alignment:
Q  173 ataagaagagccgagacagatctattgttccaaaagattgtcacaacaactgtgacaaaga 233  Q
    ||||||||||| |||| ||||| |||||||||||||||||||||| |||||||||||||||    
T  36214932 ataagaagagctgagagagatcaattgttccaaaagattgtcacagcaactgtgacaaaga 36214872  T

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Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 319 - 388
Target Start/End: Complemental strand, 36188750 - 36188681
Alignment:
Q  319 ttaataataaaagattgacaactacagaaagagctcttcttctgtgtgctaagatgaaagagctgcaaac 388  Q
    |||||| ||||||| ||| |||| |||||||||||  |||||| ||||||||||||||||||||||||||    
T  36188750 ttaatagtaaaagaatgataactgcagaaagagctgatcttctttgtgctaagatgaaagagctgcaaac 36188681  T

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Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 173 - 233
Target Start/End: Complemental strand, 36188865 - 36188805
Alignment:
Q  173 ataagaagagccgagacagatctattgttccaaaagattgtcacaacaactgtgacaaaga 233  Q
    ||||||| ||| |||| ||||| |||||||||||||||||||||||||||||| |||||||    
T  36188865 ataagaacagctgagaaagatcaattgttccaaaagattgtcacaacaactgtaacaaaga 36188805  T

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Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 173 - 233
Target Start/End: Complemental strand, 36210346 - 36210286
Alignment:
Q  173 ataagaagagccgagacagatctattgttccaaaagattgtcacaacaactgtgacaaaga 233  Q
    ||||||||||| |||| |||||  | |||||||||||||||||||||||||||||||||||    
T  36210346 ataagaagagcagagaaagatcattcgttccaaaagattgtcacaacaactgtgacaaaga 36210286  T

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Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 233
Target Start/End: Complemental strand, 36202852 - 36202727
Alignment:
Q  108 aaggagaaaatttaatcggactatgtggtctagataaaagagtcaaggcttgtatgaaaaccgtcataagaagagccgagacagatctattgttccaaaa 207  Q
    ||||||||||  |||| ||| |||| || | |||| ||||||||||||||| | | | |||||| || |||||| | |||| ||||| ||||||| ||||    
T  36202852 aaggagaaaacataattggattatgcgggccagatgaaagagtcaaggcttctgtcacaaccgttatgagaagatctgagagagatcaattgttcgaaaa 36202753  T
Q  208 gattgtcacaacaactgtgacaaaga 233  Q
    |||||||||| |||| ||||| ||||    
T  36202752 gattgtcacagcaaccgtgacgaaga 36202727  T

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Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 233
Target Start/End: Complemental strand, 36208324 - 36208199
Alignment:
Q  108 aaggagaaaatttaatcggactatgtggtctagataaaagagtcaaggcttgtatgaaaaccgtcataagaagagccgagacagatctattgttccaaaa 207  Q
    ||||||||||| |||||||| |||| || | |||||||| |||||||  || | | |||||    | ||||| ||| |||| ||||| ||||||||||||    
T  36208324 aaggagaaaatataatcggattatgcgggccagataaaatagtcaagcattctgttaaaacatctagaagaaaagctgagagagatcaattgttccaaaa 36208225  T
Q  208 gattgtcacaacaactgtgacaaaga 233  Q
    |||||||||| |||||||||| ||||    
T  36208224 gattgtcacagcaactgtgaccaaga 36208199  T

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Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 233
Target Start/End: Complemental strand, 36185073 - 36185015
Alignment:
Q  175 aagaagagccgagacagatctattgttccaaaagattgtcacaacaactgtgacaaaga 233  Q
    ||||| ||| |||| ||||| |||||||||||||||||||||| |||||||||| ||||    
T  36185073 aagaaaagctgagagagatcaattgttccaaaagattgtcacagcaactgtgaccaaga 36185015  T

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Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 217
Target Start/End: Complemental strand, 36213694 - 36213650
Alignment:
Q  173 ataagaagagccgagacagatctattgttccaaaagattgtcaca 217  Q
    ||||||||||| |||| ||||| ||||||||||||||||||||||    
T  36213694 ataagaagagctgagagagatcaattgttccaaaagattgtcaca 36213650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 343 - 386
Target Start/End: Complemental strand, 36183484 - 36183441
Alignment:
Q  343 cagaaagagctcttcttctgtgtgctaagatgaaagagctgcaa 386  Q
    |||||||||||||| || |||||||||||||||| |||||||||    
T  36183484 cagaaagagctcttattttgtgtgctaagatgaaggagctgcaa 36183441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 233
Target Start/End: Complemental strand, 36201400 - 36201342
Alignment:
Q  173 ataagaagagccgagacagatctattgttccaaaagattgtcacaacaactgtgacaaaga 233  Q
    ||||||||||| ||||  |||| |||||||||||||| ||||||| |||||||||| ||||    
T  36201400 ataagaagagctgaga--gatcaattgttccaaaagactgtcacagcaactgtgaccaaga 36201342  T

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