View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11189_low_5 (Length: 341)
Name: NF11189_low_5
Description: NF11189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11189_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 11327014 - 11326691
Alignment:
| Q |
1 |
tgcttattttctaggtaaagatgcttactaaatactctcatggtttattgtgttttctatttgagttgctctttgtatttaaatggctatgattcctcac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11327014 |
tgcttattttctaggtaaagatgcttactaaatactctcatggtttattgtgttttctatttgagttgctctttgtatttaaatggctatgattcctcaa |
11326915 |
T |
|
| Q |
101 |
acctttacgatatgcaatctaagagaatcaatgattaacctaaggtaaaggacatttctctcatgaatcagaggtatagatatgatcttgcagtggaatc |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11326914 |
accttcacgatatgcaatctaagagaatcaatgattaacctaaggtaaaggacatttctctcatgaatcagaggtatagatatgatcttgcagtggaatc |
11326815 |
T |
|
| Q |
201 |
aagagataaaggcaggaaggtcttaatcttatttttccttcaatttctctttactctttccattcctaggtaataaatcatttgaatttgttctatagat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
11326814 |
aagagataaaggcaggaaggtcttaatcttatttttccttcaatttctctttactctttccattcttaggtaataaatcatttgaatttgttctatagat |
11326715 |
T |
|
| Q |
301 |
atgtagtttttgttagtagacaac |
324 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
11326714 |
atgtagtttttgttagtagacaac |
11326691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 11485035 - 11484712
Alignment:
| Q |
1 |
tgcttattttctaggtaaagatgcttactaaatactctcatggtttattgtgttttctatttgagttgctctttgtatttaaatggctatgattcctcac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11485035 |
tgcttattttctaggtaaagatgcttactaaatactctcatggtttattgtgttttctatttgagttgctctttgtatttaaatggctatgattcctcaa |
11484936 |
T |
|
| Q |
101 |
acctttacgatatgcaatctaagagaatcaatgattaacctaaggtaaaggacatttctctcatgaatcagaggtatagatatgatcttgcagtggaatc |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11484935 |
accttcacgatatgcaatctaagagaatcaatgattaacctaaggtaaaggacatttctctcatgaatcagaggtatagatatgatcttgcagtggaatc |
11484836 |
T |
|
| Q |
201 |
aagagataaaggcaggaaggtcttaatcttatttttccttcaatttctctttactctttccattcctaggtaataaatcatttgaatttgttctatagat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
11484835 |
aagagataaaggcaggaaggtcttaatcttatttttccttcaatttctctttactctttccattcttaggtaataaatcatttgaatttgttctatagat |
11484736 |
T |
|
| Q |
301 |
atgtagtttttgttagtagacaac |
324 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
11484735 |
atgtagtttttgttagtagacaac |
11484712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 173 - 232
Target Start/End: Original strand, 48755562 - 48755621
Alignment:
| Q |
173 |
ggtatagatatgatcttgcagtggaatcaagagataaaggcaggaaggtcttaatcttat |
232 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
48755562 |
ggtatagagatgatcgtgcagtggaatcaagagataaaggtaggaaggtctgaatcttat |
48755621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 151 - 221
Target Start/End: Complemental strand, 36086321 - 36086251
Alignment:
| Q |
151 |
gacatttctctcatgaatcagaggtatagatatgatcttgcagtggaatcaagagataaaggcaggaaggt |
221 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||| | ||||||||||||||||||||| | |||||||| |
|
|
| T |
36086321 |
gacattgctctcatgaatctgaggtatagatatgaccaagcagtggaatcaagagataaaagaaggaaggt |
36086251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University