View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11189_low_6 (Length: 263)

Name: NF11189_low_6
Description: NF11189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11189_low_6
NF11189_low_6
[»] chr2 (5 HSPs)
chr2 (4-168)||(20941912-20942075)
chr2 (104-164)||(2359123-2359183)
chr2 (63-109)||(33259-33305)
chr2 (63-109)||(11021599-11021645)
chr2 (65-109)||(28248156-28248200)
[»] chr3 (12 HSPs)
chr3 (33-119)||(35861588-35861676)
chr3 (32-165)||(32842440-32842575)
chr3 (62-109)||(37865450-37865497)
chr3 (63-109)||(1847624-1847670)
chr3 (63-109)||(33111907-33111953)
chr3 (63-109)||(45255549-45255595)
chr3 (62-168)||(48635351-48635457)
chr3 (70-168)||(49494483-49494581)
chr3 (63-109)||(53092689-53092735)
chr3 (63-100)||(23775632-23775669)
chr3 (63-100)||(40508568-40508605)
chr3 (64-109)||(45897116-45897161)
[»] chr1 (7 HSPs)
chr1 (35-164)||(35009621-35009752)
chr1 (33-168)||(42557964-42558101)
chr1 (63-109)||(5784846-5784892)
chr1 (63-109)||(31803679-31803725)
chr1 (63-109)||(42136223-42136269)
chr1 (63-119)||(1444158-1444214)
chr1 (128-164)||(3369441-3369477)
[»] scaffold0722 (1 HSPs)
scaffold0722 (60-165)||(4159-4264)
[»] chr8 (9 HSPs)
chr8 (60-165)||(11790802-11790907)
chr8 (27-164)||(15683757-15683896)
chr8 (32-160)||(11719462-11719592)
chr8 (28-90)||(10770433-10770497)
chr8 (63-100)||(25370601-25370638)
chr8 (63-109)||(24526962-24527008)
chr8 (63-109)||(40019222-40019268)
chr8 (63-109)||(42894842-42894888)
chr8 (63-100)||(461251-461288)
[»] chr7 (10 HSPs)
chr7 (25-103)||(7403750-7403830)
chr7 (63-109)||(4321104-4321150)
chr7 (63-109)||(30108631-30108677)
chr7 (63-109)||(45465163-45465209)
chr7 (63-109)||(46994726-46994772)
chr7 (63-100)||(33037769-33037806)
chr7 (27-109)||(34785053-34785137)
chr7 (62-99)||(40785526-40785563)
chr7 (32-93)||(11685585-11685648)
chr7 (65-109)||(46810771-46810815)
[»] chr6 (1 HSPs)
chr6 (35-165)||(17936489-17936621)
[»] chr5 (10 HSPs)
chr5 (70-150)||(6116883-6116963)
chr5 (68-160)||(27077449-27077541)
chr5 (63-168)||(1344793-1344898)
chr5 (86-164)||(27075831-27075909)
chr5 (63-109)||(32089904-32089950)
chr5 (63-109)||(33257739-33257785)
chr5 (63-109)||(35291114-35291160)
chr5 (63-109)||(43316846-43316892)
chr5 (115-164)||(9221741-9221790)
chr5 (86-163)||(19997130-19997207)
[»] chr4 (6 HSPs)
chr4 (60-119)||(26397900-26397959)
chr4 (32-93)||(13437997-13438060)
chr4 (64-168)||(13450284-13450388)
chr4 (129-168)||(23433720-23433759)
chr4 (63-109)||(39922986-39923032)
chr4 (64-109)||(27626708-27626753)


Alignment Details
Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 4 - 168
Target Start/End: Original strand, 20941912 - 20942075
Alignment:
Q  4 tttcttccatgaccaacaccaacaccatgtcagcaccgttaacaccacaacttgaca--gagactaatttgattgacatttgacaaattcagggattaat 101  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||   ||||||  |||||||||||||||| ||||||||||||| || || ||||    
T  20941912 tttcttccatgaccaacaccaacaccacgtcagcaccgttaacaccac---ttgacatagagactaatttgattggcatttgacaaatttagagactaat 20942008  T
Q  102 gtgatattctgacaaattaggagacaaatttgactggtccttgcaaattcaaggacgaatttgatga 168  Q
    ||||||||  ||||||||||| |||||||||||| | ||||| ||||||||||||||||||||||||    
T  20942009 gtgatatttcgacaaattaggggacaaatttgaccgatccttacaaattcaaggacgaatttgatga 20942075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 164
Target Start/End: Complemental strand, 2359183 - 2359123
Alignment:
Q  104 gatattctgacaaattaggagacaaatttgactggtccttgcaaattcaaggacgaatttg 164  Q
    |||||| ||| ||||| || |||||||||| || |||||||||||||||||||| ||||||    
T  2359183 gatattttgagaaattgggggacaaatttggctcgtccttgcaaattcaaggacaaatttg 2359123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 109
Target Start/End: Complemental strand, 33305 - 33259
Alignment:
Q  63 gactaatttgattgacatttgacaaattcagggattaatgtgatatt 109  Q
    |||||| ||||||||||||| |||||||||||||||||  |||||||    
T  33305 gactaacttgattgacatttaacaaattcagggattaaattgatatt 33259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 109
Target Start/End: Complemental strand, 11021645 - 11021599
Alignment:
Q  63 gactaatttgattgacatttgacaaattcagggattaatgtgatatt 109  Q
    |||||| ||||||||||||| |||||||||||||||||  |||||||    
T  11021645 gactaacttgattgacatttaacaaattcagggattaaattgatatt 11021599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 109
Target Start/End: Original strand, 28248156 - 28248200
Alignment:
Q  65 ctaatttgattgacatttgacaaattcagggattaatgtgatatt 109  Q
    |||| ||||||||||||| |||||||||||||||||  |||||||    
T  28248156 ctaacttgattgacatttaacaaattcagggattaaattgatatt 28248200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 7e-27; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 33 - 119
Target Start/End: Complemental strand, 35861676 - 35861588
Alignment:
Q  33 tcagcaccgttaacaccacaacttgacagaga--ctaatttgattgacatttgacaaattcagggattaatgtgatattctgacaaatt 119  Q
    |||||| |||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||| |||||||||||| |||||||||    
T  35861676 tcagcatcgttaacaccacaacttgacagagagactaatttgattgacatttgacaaattcaaggactaatgtgatattttgacaaatt 35861588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 32 - 165
Target Start/End: Complemental strand, 32842575 - 32842440
Alignment:
Q  32 gtcagcaccgttaacaccacaacttgac--agagactaatttgattgacatttgacaaattcagggattaatgtgatattctgacaaattaggagacaaa 129  Q
    |||||||||||||||||| |||||||||  || |||||| ||||||||||||||||||||| | ||| ||||   |||||  ||||||||   |||| ||    
T  32842575 gtcagcaccgttaacaccccaacttgacgaagggactaaattgattgacatttgacaaatttaaggactaattaaatatttcgacaaattgaaagacgaa 32842476  T
Q  130 tttgactggtccttgcaaattcaaggacgaatttga 165  Q
      ||| || |||||||||||||||||||||| ||||    
T  32842475 actgattgatccttgcaaattcaaggacgaagttga 32842440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 62 - 109
Target Start/End: Complemental strand, 37865497 - 37865450
Alignment:
Q  62 agactaatttgattgacatttgacaaattcagggattaatgtgatatt 109  Q
    ||||||| ||||||||||||| |||||||||||||||||  |||||||    
T  37865497 agactaacttgattgacatttaacaaattcagggattaaattgatatt 37865450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 109
Target Start/End: Original strand, 1847624 - 1847670
Alignment:
Q  63 gactaatttgattgacatttgacaaattcagggattaatgtgatatt 109  Q
    |||||| ||||||||||||| |||||||||||||||||  |||||||    
T  1847624 gactaacttgattgacatttaacaaattcagggattaaattgatatt 1847670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 109
Target Start/End: Complemental strand, 33111953 - 33111907
Alignment:
Q  63 gactaatttgattgacatttgacaaattcagggattaatgtgatatt 109  Q
    |||||| ||||||||||||| |||||||||||||||||  |||||||    
T  33111953 gactaacttgattgacatttaacaaattcagggattaaattgatatt 33111907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 109
Target Start/End: Complemental strand, 45255595 - 45255549
Alignment:
Q  63 gactaatttgattgacatttgacaaattcagggattaatgtgatatt 109  Q
    |||||| ||||||||||||| ||||||||||||||||| || |||||    
T  45255595 gactaacttgattgacatttaacaaattcagggattaaagtaatatt 45255549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 168
Target Start/End: Original strand, 48635351 - 48635457
Alignment:
Q  62 agactaatttgattgacatttgacaaattcagggattaatgtgatattctgacaaattaggagacaaatttgactggtccttgcaaattcaaggacgaat 161  Q
    ||||||| || |||||||||| |||||||||||||||||  |||||||  |   ||||| | ||| |||||||| | ||| || ||||||| |||||||     
T  48635351 agactaacttaattgacatttaacaaattcagggattaaattgatatttcgcataattaagggacgaatttgaccgatccgtgaaaattcagggacgaaa 48635450  T
Q  162 ttgatga 168  Q
    |||||||    
T  48635451 ttgatga 48635457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 168
Target Start/End: Complemental strand, 49494581 - 49494483
Alignment:
Q  70 ttgattgacatttgacaaattcagggattaatgtgatattctgacaaattaggagacaaatttgactggtccttgcaaattcaaggacgaatttgatga 168  Q
    ||||||||||||| |||||||||||||| ||  |||||||  |  ||||| || ||| | ||||| || | |||||||||||| ||||||| |||||||    
T  49494581 ttgattgacattttacaaattcagggatgaaattgatatttcgtaaaatttggggacgattttgattgatgcttgcaaattcagggacgaagttgatga 49494483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 109
Target Start/End: Complemental strand, 53092735 - 53092689
Alignment:
Q  63 gactaatttgattgacatttgacaaattcagggattaatgtgatatt 109  Q
    |||| ||||||||||||||| | |||||||||||||||| |||||||    
T  53092735 gactgatttgattgacattttataaattcagggattaatttgatatt 53092689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 100
Target Start/End: Original strand, 23775632 - 23775669
Alignment:
Q  63 gactaatttgattgacatttgacaaattcagggattaa 100  Q
    |||||| ||||||||||||| |||||||||||||||||    
T  23775632 gactaacttgattgacatttaacaaattcagggattaa 23775669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 100
Target Start/End: Complemental strand, 40508605 - 40508568
Alignment:
Q  63 gactaatttgattgacatttgacaaattcagggattaa 100  Q
    |||||| ||||||||||||| |||||||||||||||||    
T  40508605 gactaacttgattgacatttaacaaattcagggattaa 40508568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 64 - 109
Target Start/End: Complemental strand, 45897161 - 45897116
Alignment:
Q  64 actaatttgattgacatttgacaaattcagggattaatgtgatatt 109  Q
    ||||| ||||||||||||| |||||||||||||||||  |||||||    
T  45897161 actaacttgattgacatttaacaaattcagggattaaattgatatt 45897116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 35 - 164
Target Start/End: Original strand, 35009621 - 35009752
Alignment:
Q  35 agcaccgttaacaccacaacttgac--agagactaatttgattgacatttgacaaattcagggattaatgtgatattctgacaaattaggagacaaattt 132  Q
    ||||||||||||| | |||||||||  |||||||||||||||||||||||||||| |||||||| ||||||||||||  || ||||| |||||| || |     
T  35009621 agcaccgttaacatcccaacttgacgaagagactaatttgattgacatttgacaacttcagggactaatgtgatatttcgataaattgggagacgaaata 35009720  T
Q  133 gactggtccttgcaaattcaaggacgaatttg 164  Q
    |  |||||||| |||||||||| |||||||||    
T  35009721 gggtggtccttacaaattcaagaacgaatttg 35009752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 33 - 168
Target Start/End: Complemental strand, 42558101 - 42557964
Alignment:
Q  33 tcagcaccgttaacaccacaacttgac--agagactaatttgattgacatttgacaaattcagggattaatgtgatattctgacaaattaggagacaaat 130  Q
    ||||||||||||||||| |||||||||  || |||||| |||||||| ||||||||||||||| || ||||   ||||| ||| ||||| ||  ||||||    
T  42558101 tcagcaccgttaacaccccaacttgacgtagggactaaattgattgaaatttgacaaattcagagactaattgaatattttgataaattggggaacaaat 42558002  T
Q  131 ttgactggtccttgcaaattcaaggacgaatttgatga 168  Q
    |||| ||||||||||||||| ||||||||| |||||||    
T  42558001 ttgattggtccttgcaaatttaaggacgaagttgatga 42557964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 109
Target Start/End: Original strand, 5784846 - 5784892
Alignment:
Q  63 gactaatttgattgacatttgacaaattcagggattaatgtgatatt 109  Q
    |||||| ||||||||||||| |||||||||||||||||  |||||||    
T  5784846 gactaacttgattgacatttaacaaattcagggattaaattgatatt 5784892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 109
Target Start/End: Original strand, 31803679 - 31803725
Alignment:
Q  63 gactaatttgattgacatttgacaaattcagggattaatgtgatatt 109  Q
    |||||| ||||||||||||| |||||||||||||||||  |||||||    
T  31803679 gactaacttgattgacatttaacaaattcagggattaaattgatatt 31803725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 109
Target Start/End: Original strand, 42136223 - 42136269
Alignment:
Q  63 gactaatttgattgacatttgacaaattcagggattaatgtgatatt 109  Q
    |||||| ||||||||||||| |||||||||||||||||  |||||||    
T  42136223 gactaacttgattgacatttaacaaattcagggattaaattgatatt 42136269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 119
Target Start/End: Original strand, 1444158 - 1444214
Alignment:
Q  63 gactaatttgattgacatttgacaaattcagggattaatgtgatattctgacaaatt 119  Q
    ||||||||||||||||||||   ||||||||||| |||| ||||||| ||| |||||    
T  1444158 gactaatttgattgacattttgtaaattcagggactaatttgatattttgaaaaatt 1444214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 164
Target Start/End: Complemental strand, 3369477 - 3369441
Alignment:
Q  128 aatttgactggtccttgcaaattcaaggacgaatttg 164  Q
    |||||| ||||||||||||||||||||||||| ||||    
T  3369477 aatttggctggtccttgcaaattcaaggacgattttg 3369441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0722 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0722
Description:

Target: scaffold0722; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 60 - 165
Target Start/End: Complemental strand, 4264 - 4159
Alignment:
Q  60 agagactaatttgattgacatttgacaaattcagggattaatgtgatattctgacaaattaggagacaaatttgactggtccttgcaaattcaaggacga 159  Q
    |||||||||||||||||||||||||||| |||  ||||||||||||||||  ||||||||||  |||||||||  ||| ||||| |||||||||| ||||    
T  4264 agagactaatttgattgacatttgacaacttctaggattaatgtgatatttcgacaaattagatgacaaatttagctgatccttacaaattcaagaacga 4165  T
Q  160 atttga 165  Q
    ||||||    
T  4164 atttga 4159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 60 - 165
Target Start/End: Original strand, 11790802 - 11790907
Alignment:
Q  60 agagactaatttgattgacatttgacaaattcagggattaatgtgatattctgacaaattaggagacaaatttgactggtccttgcaaattcaaggacga 159  Q
    |||||||||||||||||||||||||||| |||| ||| ||||||||||||   |||||||  | |||||||||||| | || ||||||||||||| || |    
T  11790802 agagactaatttgattgacatttgacaacttcaaggactaatgtgatatttctacaaattgagggacaaatttgacggatcattgcaaattcaagaacaa 11790901  T
Q  160 atttga 165  Q
    ||||||    
T  11790902 atttga 11790907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 164
Target Start/End: Complemental strand, 15683896 - 15683757
Alignment:
Q  27 accatgtcagcaccgttaacaccacaacttgacaga--gactaatttgattgacatttgacaaattcagggattaatgtgatattctgacaaattaggag 124  Q
    |||| |||| |||| |||||||||||||||||   |  |||||| |||||||||||||| |||||||| |||| ||| |||||||  || ||||  || |    
T  15683896 accacgtcaacacctttaacaccacaacttgatgaatggactaaattgattgacatttgccaaattcatggatgaatttgatatttagataaatcggggg 15683797  T
Q  125 acaaatttgactggtccttgcaaattcaaggacgaatttg 164  Q
    || ||||||  ||||||||||||||||||||| |||||||    
T  15683796 acgaatttggatggtccttgcaaattcaaggatgaatttg 15683757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 160
Target Start/End: Complemental strand, 11719592 - 11719462
Alignment:
Q  32 gtcagcaccgttaacaccacaacttgacagaga--ctaatttgattgacatttgacaaattcagggattaatgtgatattctgacaaattaggagacaaa 129  Q
    ||||||||||||||||   |||||| |||||||  |||||||||||||||||| |||||||||||||  ||   || |||   | ||||| | |||| ||    
T  11719592 gtcagcaccgttaacatgccaacttaacagagagactaatttgattgacatttaacaaattcagggacgaaatagacatttcaataaattggaagacgaa 11719493  T
Q  130 tttgactggtccttgcaaattcaaggacgaa 160  Q
    ||||| |||||||||||||||||| ||||||    
T  11719492 tttgattggtccttgcaaattcaaagacgaa 11719462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 90
Target Start/End: Complemental strand, 10770497 - 10770433
Alignment:
Q  28 ccatgtcagcaccgttaacaccacaacttgac--agagactaatttgattgacatttgacaaatt 90  Q
    |||||||||||| | ||||||| |||||||||  ||||||||| ||||||||| |||||||||||    
T  10770497 ccatgtcagcactgataacacctcaacttgacgcagagactaaattgattgacttttgacaaatt 10770433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 100
Target Start/End: Complemental strand, 25370638 - 25370601
Alignment:
Q  63 gactaatttgattgacatttgacaaattcagggattaa 100  Q
    |||||| |||||||||||||||||||||||||||||||    
T  25370638 gactaacttgattgacatttgacaaattcagggattaa 25370601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 109
Target Start/End: Complemental strand, 24527008 - 24526962
Alignment:
Q  63 gactaatttgattgacatttgacaaattcagggattaatgtgatatt 109  Q
    |||||| ||||||||||||| |||||||||||||||||  |||||||    
T  24527008 gactaacttgattgacatttaacaaattcagggattaaattgatatt 24526962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 109
Target Start/End: Complemental strand, 40019268 - 40019222
Alignment:
Q  63 gactaatttgattgacatttgacaaattcagggattaatgtgatatt 109  Q
    |||||| ||||||||||||| |||||||||||||||||  |||||||    
T  40019268 gactaacttgattgacatttaacaaattcagggattaaattgatatt 40019222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 109
Target Start/End: Complemental strand, 42894888 - 42894842
Alignment:
Q  63 gactaatttgattgacatttgacaaattcagggattaatgtgatatt 109  Q
    |||||| ||||||||||||| |||||||||||||||||  |||||||    
T  42894888 gactaacttgattgacatttaacaaattcagggattaaattgatatt 42894842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 100
Target Start/End: Complemental strand, 461288 - 461251
Alignment:
Q  63 gactaatttgattgacatttgacaaattcagggattaa 100  Q
    |||||| ||||||||||||| |||||||||||||||||    
T  461288 gactaacttgattgacatttaacaaattcagggattaa 461251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 25 - 103
Target Start/End: Original strand, 7403750 - 7403830
Alignment:
Q  25 acaccatgtcagcaccgttaacaccacaacttgacagag--actaatttgattgacatttgacaaattcagggattaatgt 103  Q
    |||||||||||||| ||||||||||| |||||||  |||  ||||||||||||||||||||| ||||||||||| ||||||    
T  7403750 acaccatgtcagcatcgttaacaccataacttgatggagggactaatttgattgacatttgataaattcagggactaatgt 7403830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 109
Target Start/End: Complemental strand, 4321150 - 4321104
Alignment:
Q  63 gactaatttgattgacatttgacaaattcagggattaatgtgatatt 109  Q
    |||||| ||||||||||||| |||||||||||||||||  |||||||    
T  4321150 gactaacttgattgacatttaacaaattcagggattaaattgatatt 4321104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 109
Target Start/End: Complemental strand, 30108677 - 30108631
Alignment:
Q  63 gactaatttgattgacatttgacaaattcagggattaatgtgatatt 109  Q
    |||||| ||||||||||||| |||||||||||||||||  |||||||    
T  30108677 gactaacttgattgacatttaacaaattcagggattaaattgatatt 30108631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 109
Target Start/End: Original strand, 45465163 - 45465209
Alignment:
Q  63 gactaatttgattgacatttgacaaattcagggattaatgtgatatt 109  Q
    |||||| ||||||||||||| |||||||||||||||||  |||||||    
T  45465163 gactaacttgattgacatttaacaaattcagggattaaattgatatt 45465209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 109
Target Start/End: Complemental strand, 46994772 - 46994726
Alignment:
Q  63 gactaatttgattgacatttgacaaattcagggattaatgtgatatt 109  Q
    |||||| ||||||||||||| |||||||||||||||||  |||||||    
T  46994772 gactaacttgattgacatttaacaaattcagggattaaattgatatt 46994726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 100
Target Start/End: Complemental strand, 33037806 - 33037769
Alignment:
Q  63 gactaatttgattgacatttgacaaattcagggattaa 100  Q
    |||||| ||||||||||||| |||||||||||||||||    
T  33037806 gactaacttgattgacatttaacaaattcagggattaa 33037769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 109
Target Start/End: Original strand, 34785053 - 34785137
Alignment:
Q  27 accatgtcagcaccgttaacaccacaacttgacagag--actaatttgattgacatttgacaaattcagggattaatgtgatatt 109  Q
    |||| |||||||||||||||||  ||| | ||| |||  ||||| ||||||||||||| ||||||||||||| || | |||||||    
T  34785053 accacgtcagcaccgttaacactccaattggacggagggactaaattgattgacattttacaaattcagggactattttgatatt 34785137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 99
Target Start/End: Original strand, 40785526 - 40785563
Alignment:
Q  62 agactaatttgattgacatttgacaaattcagggatta 99  Q
    ||||||| ||||||||||||| ||||||||||||||||    
T  40785526 agactaacttgattgacatttaacaaattcagggatta 40785563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 11685585 - 11685648
Alignment:
Q  32 gtcagcaccgttaacaccacaacttgacagag--actaatttgattgacatttgacaaattcag 93  Q
    |||||||||||||||||  ||| | |||||||  ||||| ||||||||||| ||||||||||||    
T  11685585 gtcagcaccgttaacactccaattggacagagtgactaaattgattgacatatgacaaattcag 11685648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 109
Target Start/End: Complemental strand, 46810815 - 46810771
Alignment:
Q  65 ctaatttgattgacatttgacaaattcagggattaatgtgatatt 109  Q
    |||| ||||||||||||| |||||||||||||||||  |||||||    
T  46810815 ctaacttgattgacatttaacaaattcagggattaaattgatatt 46810771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 35 - 165
Target Start/End: Original strand, 17936489 - 17936621
Alignment:
Q  35 agcaccgttaacaccacaacttgacagag--actaatttgattgacatttgacaaattcagggattaatgtgatattctgacaaattaggagacaaattt 132  Q
    ||||||||||||||| ||||||||| |||  ||||| ||||||||||||||||||||| ||| | ||||   |||||  ||||||||   |||| ||  |    
T  17936489 agcaccgttaacaccccaacttgacggagggactaaattgattgacatttgacaaatttaggaactaattaaatatttcgacaaattgaaagacgaaact 17936588  T
Q  133 gactggtccttgcaaattcaaggacgaatttga 165  Q
    || |  |||||||||||||||||||||| ||||    
T  17936589 gatttatccttgcaaattcaaggacgaagttga 17936621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 70 - 150
Target Start/End: Original strand, 6116883 - 6116963
Alignment:
Q  70 ttgattgacatttgacaaattcagggattaatgtgatattctgacaaattaggagacaaatttgactggtccttgcaaatt 150  Q
    ||||||||||||||||||||||| ||| || |  | ||||  |||||||| || ||||||||||| |||||||||||||||    
T  6116883 ttgattgacatttgacaaattcaaggactatttggctatttcgacaaattgggggacaaatttgattggtccttgcaaatt 6116963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 68 - 160
Target Start/End: Original strand, 27077449 - 27077541
Alignment:
Q  68 atttgattgacatttgacaaattcagggattaatgtgatattctgacaaattaggagacaaatttgactggtccttgcaaattcaaggacgaa 160  Q
    ||||||||||||||||  |||||||||||| ||   |||||| ||| ||||| |  ||| |||||| || |||||||||||||||||||||||    
T  27077449 atttgattgacatttggtaaattcagggataaaatagatattttgaaaaatttgaggacgaatttggcttgtccttgcaaattcaaggacgaa 27077541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 168
Target Start/End: Original strand, 1344793 - 1344898
Alignment:
Q  63 gactaatttgattgacatttgacaaattcagggattaatgtgatattctgacaaattaggagacaaatttgactggtccttgcaaattcaaggacgaatt 162  Q
    |||||| ||||||||||||| ||||||||| ||| || | |||||||  |  ||||| || |||||||||||| | | | |||||||||| ||||||| |    
T  1344793 gactaaattgattgacattttacaaattcaaggactattttgatatttcgtaaaattgggggacaaatttgaccgattcatgcaaattcagggacgaaat 1344892  T
Q  163 tgatga 168  Q
    ||||||    
T  1344893 tgatga 1344898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 164
Target Start/End: Complemental strand, 27075909 - 27075831
Alignment:
Q  86 aaattcagggattaatgtgatattctgacaaattaggagacaaatttgactggtccttgcaaattcaaggacgaatttg 164  Q
    ||||||||| | |||| ||||||| ||| |||||  |  ||||||||| | |||||||||||||||||||| |||||||    
T  27075909 aaattcaggaactaatttgatattttgaaaaattgtggtacaaatttggccggtccttgcaaattcaaggatgaatttg 27075831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 109
Target Start/End: Original strand, 32089904 - 32089950
Alignment:
Q  63 gactaatttgattgacatttgacaaattcagggattaatgtgatatt 109  Q
    |||||| ||||||||||||| |||||||||||||||||  |||||||    
T  32089904 gactaacttgattgacatttaacaaattcagggattaaattgatatt 32089950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 109
Target Start/End: Original strand, 33257739 - 33257785
Alignment:
Q  63 gactaatttgattgacatttgacaaattcagggattaatgtgatatt 109  Q
    |||||| ||||||||||||| |||||||||||||||||  |||||||    
T  33257739 gactaacttgattgacatttaacaaattcagggattaaattgatatt 33257785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 109
Target Start/End: Complemental strand, 35291160 - 35291114
Alignment:
Q  63 gactaatttgattgacatttgacaaattcagggattaatgtgatatt 109  Q
    |||||| ||||||||||||| |||||||||||||||||  |||||||    
T  35291160 gactaacttgattgacatttaacaaattcagggattaaattgatatt 35291114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 109
Target Start/End: Complemental strand, 43316892 - 43316846
Alignment:
Q  63 gactaatttgattgacatttgacaaattcagggattaatgtgatatt 109  Q
    |||||| ||||||||||||| |||||||||||||||||  |||||||    
T  43316892 gactaacttgattgacatttaacaaattcagggattaaattgatatt 43316846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 115 - 164
Target Start/End: Original strand, 9221741 - 9221790
Alignment:
Q  115 aaattaggagacaaatttgactggtccttgcaaattcaaggacgaatttg 164  Q
    ||||| |||||| |||||||||| |||||||||||| || ||||||||||    
T  9221741 aaattgggagacgaatttgactgatccttgcaaatttaaagacgaatttg 9221790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 163
Target Start/End: Complemental strand, 19997207 - 19997130
Alignment:
Q  86 aaattcagggattaatgtgatattctgacaaattaggagacaaatttgactggtccttgcaaattcaaggacgaattt 163  Q
    ||||||||| | |||| ||||||| ||| ||||| || ||| ||||||  |||||||| ||||||||||||| |||||    
T  19997207 aaattcaggaagtaatttgatattttgaaaaatttggggacgaatttggatggtccttacaaattcaaggacaaattt 19997130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 119
Target Start/End: Original strand, 26397900 - 26397959
Alignment:
Q  60 agagactaatttgattgacatttgacaaattcagggattaatgtgatattctgacaaatt 119  Q
    |||||||||||||||||||||||||||| |||||  | ||||||||||||  ||||||||    
T  26397900 agagactaatttgattgacatttgacaacttcagaaactaatgtgatatttcgacaaatt 26397959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 93
Target Start/End: Complemental strand, 13438060 - 13437997
Alignment:
Q  32 gtcagcaccgttaacaccacaacttgacaga--gactaatttgattgacatttgacaaattcag 93  Q
    |||||||||||||||||  ||| ||||||||  |||||| ||||||||||||| ||||||||||    
T  13438060 gtcagcaccgttaacactccaatttgacagatggactaaattgattgacattttacaaattcag 13437997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 168
Target Start/End: Original strand, 13450284 - 13450388
Alignment:
Q  64 actaatttgattgacatttgacaaattcagggattaatgtgatattctgacaaattaggagacaaatttgactggtccttgcaaattcaaggacgaattt 163  Q
    ||||| |||||||||| || ||||||||||||| || | | ||||| ||  ||||| || ||||||||||||   | | |||||||||||||||||| ||    
T  13450284 actaaattgattgacactttacaaattcagggactattttcatattttgttaaattgggggacaaatttgacatattcgtgcaaattcaaggacgaagtt 13450383  T
Q  164 gatga 168  Q
    |||||    
T  13450384 gatga 13450388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 129 - 168
Target Start/End: Original strand, 23433720 - 23433759
Alignment:
Q  129 atttgactggtccttgcaaattcaaggacgaatttgatga 168  Q
    ||||||||| ||| ||||||||||||||||||||||||||    
T  23433720 atttgactgatccgtgcaaattcaaggacgaatttgatga 23433759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 109
Target Start/End: Original strand, 39922986 - 39923032
Alignment:
Q  63 gactaatttgattgacatttgacaaattcagggattaatgtgatatt 109  Q
    |||||| ||||||||||||| |||||||||||||||||  |||||||    
T  39922986 gactaacttgattgacatttaacaaattcagggattaaattgatatt 39923032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 64 - 109
Target Start/End: Original strand, 27626708 - 27626753
Alignment:
Q  64 actaatttgattgacatttgacaaattcagggattaatgtgatatt 109  Q
    ||||| ||||||||||||| |||||||||||||||||  |||||||    
T  27626708 actaacttgattgacatttaacaaattcagggattaaattgatatt 27626753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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