View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11189_low_7 (Length: 226)
Name: NF11189_low_7
Description: NF11189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11189_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 6 - 208
Target Start/End: Complemental strand, 5045885 - 5045683
Alignment:
| Q |
6 |
gtcgagtgagatgaaaatgctagtgagatagatactagtgatgtttttggactcactactttgagaacaagtcgactctttgcagttccaattaattccc |
105 |
Q |
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| T |
5045885 |
gtcgaatgggatgaaaatgctagtgagatagatactagtgatgtttttggactcactactttgagaacaagtcgactcattgctgttccagttaattccc |
5045786 |
T |
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| Q |
106 |
tctctaaagcaacaaaactaaatttgaaaaagtccaaaatactcttagcttcaacaagaaatggtgtgaagtgcgtaagaagagcttttggaagggactt |
205 |
Q |
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| T |
5045785 |
tctctaaagcaacaaaactaaatttgaaaaagtccaaaatactcttagcttcaacaagaaatggtgtgaagtgtgtaagaagagcttttgggagggactt |
5045686 |
T |
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| Q |
206 |
gtt |
208 |
Q |
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||| |
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| T |
5045685 |
gtt |
5045683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 24 - 176
Target Start/End: Complemental strand, 32312990 - 32312829
Alignment:
| Q |
24 |
gctagtgagatagatactagtgatgtttttggactcactactttgagaacaagtcgactctttgcagttccaattaa----------ttccctctctaaa |
113 |
Q |
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||||||||||| ||||| ||||||||||||||||||||| || | || ||||||||||| ||||||||||| ||| | ||||||||||| |
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| T |
32312990 |
gctagtgagatggatacgagtgatgtttttggactcactgctccgcgagcaagtcgactcattgcagttccagctaagcgtgttgtgtgccctctctaaa |
32312891 |
T |
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| Q |
114 |
gcaacaaaactaaatttgaaaaagtccaaaatactcttagcttcaacaagaaatggtgtgaag |
176 |
Q |
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||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
32312890 |
tcaacaaaactaaatttggtaaagtccaaaatact-ttagtttcaacaagaaatggtgtgaag |
32312829 |
T |
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