View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11190_high_19 (Length: 239)
Name: NF11190_high_19
Description: NF11190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11190_high_19 |
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Alignment Details
Target: chr8 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 11 - 220
Target Start/End: Original strand, 35948065 - 35948274
Alignment:
| Q |
11 |
agagaagaagaaaaccaaagaagcaacaaatgtacttgcgagtcgaatcatgaacatcctcatcatcctcgtcattttcatcannnnnnnggtcaagttt |
110 |
Q |
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| T |
35948065 |
agagaagaagaaaaccaaagaagcaacaaatgtacttgtgagtcgaatcatgaacatcctcatcatcctcgtcattttcatcatttttttcgtcaagttt |
35948164 |
T |
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| Q |
111 |
cttccaagtggtagagtatcgtgaggtggaagattcaccacgagagtggctaggagtaaaatccagcgagtttgaatggattgagagtttctcaacgtca |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
35948165 |
cttccaagtggtagagtatcgtgaggtggaagattcaccacgagagtggctaggagtaaaatccaccgaatttgaatggattgagagtttctcaacgtca |
35948264 |
T |
|
| Q |
211 |
aggctttggg |
220 |
Q |
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|||||||||| |
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| T |
35948265 |
aggctttggg |
35948274 |
T |
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