View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11190_high_4 (Length: 712)
Name: NF11190_high_4
Description: NF11190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11190_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 672; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 672; E-Value: 0
Query Start/End: Original strand, 1 - 692
Target Start/End: Complemental strand, 7095914 - 7095223
Alignment:
| Q |
1 |
gggaagcagattcaaggggattggcagatttccgtcgtcacaatccacctcaattccatggagaattagacccagagaaggctgatttgtggctacaaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
7095914 |
gggaagcagattcaaggggattggcagatttccgtcgtcacaatccacctcaattccatggagaattagacccagagagggctgatttgtggctacaaga |
7095815 |
T |
|
| Q |
101 |
agtggagaagattttgaaagtgattaactgtcctgaagaatcaaaggtgaaatatgccacatatttgttgcttggtgatgcagagtattggtggaaaaat |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
7095814 |
agtggagaagattttgaaagtgattaactgtcctgaagaatcaaaggtgaaatatgccacatatttgttgcttggtgatgcagattattggtggaaaaat |
7095715 |
T |
|
| Q |
201 |
gctaaaaatatgttagaaaatgcgcaagaggaaatcagttgggaggtttttcagaccaagttcttggaaagatattttcctcagagtgcaagaactaaat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7095714 |
gctaaaaatatgttagaaaatgcgcaagaggaaatcagttgggaggtttttcagaccaagttcttggaaagatattttcctcagagtgcaagaactaaat |
7095615 |
T |
|
| Q |
301 |
tgggtgatgattttctaaagttacaacagggcaacatgacggtaggagcatatgcagcaaggtttgagacattgtccaggtacttcaagttctttcgtca |
400 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7095614 |
tgggtgatgattttctgaagttacaacagggcaacatgacggtaggagcatatgcagcaaggtttgagacattgtccaggtacttcaagttctttcgtca |
7095515 |
T |
|
| Q |
401 |
gactgtggatgaggcctacatgtgccaccgattccaagaagggctcaaggatgaaattcaagacatggtaatgccattgggaattcaacaattccatcct |
500 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7095514 |
gactgtggattaggcctacatgtgccaccgattccaagaagggctcaaggatgaaattcaagacatggtaatgccattgggaattcaacaattccatcct |
7095415 |
T |
|
| Q |
501 |
ttggtagaaaagtgtagagaaatagaagcgatgaagaataagagacttgctcgagggaataacaataactgtgggggaccaactcgttccagcaatcaaa |
600 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7095414 |
ttggtagaaaaatgtagagaaatagaagcgatgaagaataagagacttgctcgagggaataacaataactgtgggggaccaactcgttccagcaatcaaa |
7095315 |
T |
|
| Q |
601 |
atcgtggacgaggaggaaatgggaagaagccctacgaggactctagagaacctaaaggggattataataattcattggaacctagtgcggga |
692 |
Q |
| |
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| T |
7095314 |
atcgtggacgaggaggaaatgggaagaagccctacgaggactctagagaacctaaaggggattataataattcattggaacctagtgcggga |
7095223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 672; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 672; E-Value: 0
Query Start/End: Original strand, 1 - 688
Target Start/End: Original strand, 8375888 - 8376574
Alignment:
| Q |
1 |
gggaagcagattcaaggggattggcagatttccgtcgtcacaatccacctcaattccatggagaattagacccagagaaggctgatttgtggctacaaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8375888 |
gggaagcagattcaaggggattggcagatttccgtcgtcacaatccacctcaattccatggagaattagacccagagaaggctgatttgtggctacaaga |
8375987 |
T |
|
| Q |
101 |
agtggagaagattttgaaagtgattaactgtcctgaagaatcaaaggtgaaatatgccacatatttgttgcttggtgatgcagagtattggtggaaaaat |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
8375988 |
agtggagaagattttgaaagtgattaactgtcctgaagaatcaaaggtgaaatatgccacacatttgttgcttggtgatgcagagtattggtggaaaaat |
8376087 |
T |
|
| Q |
201 |
gctaaaaatatgttagaaaatgcgcaagaggaaatcagttgggaggtttttcagaccaagttcttggaaagatattttcctcagagtgcaagaactaaat |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8376088 |
gctaaaaatatgttagaaaatgcgcaagaggaaatcagttgggaggtttttcagaccaagttcttggaaagatattttcctcagagtgcaagaactaaat |
8376187 |
T |
|
| Q |
301 |
tgggtgatgattttctaaagttacaacagggcaacatgacggtaggagcatatgcagcaaggtttgagacattgtccaggtacttcaagttctttcgtca |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
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| T |
8376188 |
tgggtgatgattttctaaagttacaacagggcaacatgacggtaggagcatatgcagcaaggtttgagacactgtccaggtacttcaagttc-ttcgtca |
8376286 |
T |
|
| Q |
401 |
gactgtggatgaggcctacatgtgccaccgattccaagaagggctcaaggatgaaattcaagacatggtaatgccattgggaattcaacaattccatcct |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8376287 |
gactgtggatgaggcctacatgtgccaccgattccaagaagggctcaaggatgaaattcaagacatggtaatgccattgggaattcaacaattccatcct |
8376386 |
T |
|
| Q |
501 |
ttggtagaaaagtgtagagaaatagaagcgatgaagaataagagacttgctcgagggaataacaataactgtgggggaccaactcgttccagcaatcaaa |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8376387 |
ttggtagaaaagtgtagagaaatagaagcgatgaagaataagagacttgctcgagggaataacaataactgtgggggaccaactcgttccagcaatcaaa |
8376486 |
T |
|
| Q |
601 |
atcgtggacgaggaggaaatgggaagaagccctacgaggactctagagaacctaaaggggattataataattcattggaacctagtgc |
688 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8376487 |
atcgtggacgaggaggaaatgggaagaagccctacgaggactctagagaacctaaaggggattataataattcattggaacctagtgc |
8376574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 5 - 545
Target Start/End: Original strand, 15420489 - 15421029
Alignment:
| Q |
5 |
agcagattcaaggggattggcagatttccgtcgtcacaatccacctcaattccatggagaattagacccagagaaggctgatttgtggctacaagaagtg |
104 |
Q |
| |
|
||||||||||||||| ||||| ||||| ||||||||||||||||| |||||||| || ||| | ||||||||||||||||||||||||||||||||||| |
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|
| T |
15420489 |
agcagattcaaggggcttggctgattttcgtcgtcacaatccaccccaattccacggggaagtggacccagagaaggctgatttgtggctacaagaagtt |
15420588 |
T |
|
| Q |
105 |
gagaagattttgaaagtgattaactgtcctgaagaatcaaaggtgaaatatgccacatatttgttgcttggtgatgcagagtattggtggaaaaatgcta |
204 |
Q |
| |
|
|| ||||||||||| |||||||||||||||||||| || ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| | |
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|
| T |
15420589 |
gaaaagattttgaatgtgattaactgtcctgaagattctaaggtgaaatatgccacttatctgttgcttggtgatgcagagtattggtggaaaaatgcca |
15420688 |
T |
|
| Q |
205 |
aaaatatgttagaaaatgcgcaagaggaaatcagttgggaggtttttcagaccaagttcttggaaagatattttcctcagagtgcaagaactaaattggg |
304 |
Q |
| |
|
||| ||||||||| ||||| ||||||||||||| ||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||| |
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|
| T |
15420689 |
aaagtatgttagagaatgctcaagaggaaatcacttgggaggtttttcaagccaagttcttggaaagatttttccctcagagtgcaagaactaaattggg |
15420788 |
T |
|
| Q |
305 |
tgatgattttctaaagttacaacagggcaacatgacggtaggagcatatgcagcaaggtttgagacattgtccaggtacttcaagttctttcgtcagact |
404 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||| |||||||| |
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|
| T |
15420789 |
tgatgattttctgaagttacgacagggcaacatgacggtaggagcatatgcagcaaggtttgagacgctatctaggtacttcaagttcttccgtcagacc |
15420888 |
T |
|
| Q |
405 |
gtggatgaggcctacatgtgccaccgattccaagaagggctcaaggatgaaattcaagacatggtaatgccattgggaattcaacaattccatcctttgg |
504 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||| |
|
|
| T |
15420889 |
gtggatgaagcctacatgtgccatcgattccaagaggggcttaaggatgaaattcaagacatggtgatgcctttgggaattcaacaattccagcctttgg |
15420988 |
T |
|
| Q |
505 |
tagaaaagtgtagagaaatagaagcgatgaagaataagaga |
545 |
Q |
| |
|
| |||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
15420989 |
ttgaaaagtgcagagaaatagaggcgatgaagaataagaga |
15421029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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