View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11190_low_1 (Length: 1113)

Name: NF11190_low_1
Description: NF11190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11190_low_1
NF11190_low_1
[»] chr5 (33 HSPs)
chr5 (20-1100)||(23813321-23814426)
chr5 (187-1100)||(23732051-23732967)
chr5 (24-809)||(23860567-23861355)
chr5 (338-1100)||(23729330-23730095)
chr5 (20-756)||(23769253-23769979)
chr5 (20-756)||(23819101-23819827)
chr5 (346-1100)||(23644474-23645253)
chr5 (28-809)||(23673459-23674244)
chr5 (20-414)||(23764199-23764593)
chr5 (811-1100)||(23780108-23780417)
chr5 (811-1100)||(23867061-23867370)
chr5 (811-1097)||(23768862-23769167)
chr5 (811-1097)||(23818710-23819015)
chr5 (24-226)||(23774201-23774402)
chr5 (900-1094)||(23674425-23674630)
chr5 (900-1094)||(23860181-23860386)
chr5 (22-219)||(23754168-23754370)
chr5 (811-880)||(23674318-23674387)
chr5 (811-880)||(23860424-23860493)
chr5 (240-361)||(23766854-23766975)
chr5 (240-361)||(23816702-23816823)
chr5 (737-809)||(23780483-23780554)
chr5 (737-809)||(23867436-23867507)
chr5 (722-792)||(23687221-23687291)
chr5 (722-792)||(23737202-23737272)
chr5 (462-752)||(23766469-23766762)
chr5 (462-752)||(23816317-23816610)
chr5 (294-370)||(11081805-11081881)
chr5 (302-351)||(20292995-20293044)
chr5 (633-695)||(16947834-16947896)
chr5 (302-351)||(20301443-20301492)
chr5 (302-351)||(20305856-20305905)
chr5 (302-351)||(20310260-20310309)
[»] chr3 (42 HSPs)
chr3 (527-754)||(1940176-1940399)
chr3 (531-689)||(2932153-2932311)
chr3 (504-655)||(997784-997935)
chr3 (615-677)||(1027798-1027860)
chr3 (520-696)||(989623-989798)
chr3 (520-684)||(1022695-1022859)
chr3 (504-655)||(1014174-1014325)
chr3 (614-684)||(1007761-1007831)
chr3 (300-370)||(4142117-4142187)
chr3 (531-689)||(1889244-1889408)
chr3 (260-370)||(3754558-3754668)
chr3 (521-561)||(956612-956652)
chr3 (300-360)||(4157937-4157997)
chr3 (522-654)||(7431747-7431879)
chr3 (246-361)||(956325-956440)
chr3 (259-365)||(2686300-2686409)
chr3 (531-633)||(1890772-1890874)
chr3 (300-358)||(2696727-2696785)
chr3 (300-361)||(1007459-1007520)
chr3 (300-361)||(1022487-1022548)
chr3 (521-570)||(1936757-1936806)
chr3 (300-365)||(3746006-3746071)
chr3 (520-565)||(12133312-12133357)
chr3 (291-371)||(989385-989465)
chr3 (531-570)||(1897448-1897487)
chr3 (531-570)||(1906894-1906933)
chr3 (531-570)||(1930946-1930985)
chr3 (165-200)||(12132951-12132986)
chr3 (531-570)||(12218280-12218319)
chr3 (302-353)||(37753345-37753396)
chr3 (614-656)||(802884-802926)
chr3 (276-358)||(803213-803295)
chr3 (720-754)||(900375-900409)
chr3 (302-364)||(2644351-2644413)
chr3 (302-364)||(2659141-2659203)
chr3 (302-364)||(7334228-7334290)
chr3 (536-570)||(7427364-7427398)
chr3 (521-562)||(783590-783631)
chr3 (520-561)||(802977-803018)
chr3 (300-365)||(2678387-2678452)
chr3 (166-207)||(2678542-2678583)
chr3 (302-351)||(13498224-13498273)
[»] chr4 (5 HSPs)
chr4 (614-677)||(22671811-22671874)
chr4 (290-358)||(20019767-20019835)
chr4 (516-649)||(20019473-20019600)
chr4 (290-358)||(20016180-20016249)
chr4 (248-375)||(22672105-22672232)
[»] chr2 (3 HSPs)
chr2 (520-608)||(33038434-33038522)
chr2 (718-755)||(36577819-36577856)
chr2 (520-562)||(33026902-33026944)
[»] chr6 (2 HSPs)
chr6 (520-565)||(24417244-24417289)
chr6 (531-570)||(9819606-9819645)
[»] chr7 (1 HSPs)
chr7 (167-227)||(1078301-1078361)
[»] scaffold0044 (1 HSPs)
scaffold0044 (522-570)||(89387-89435)
[»] chr1 (1 HSPs)
chr1 (301-370)||(51381438-51381507)


Alignment Details
Target: chr5 (Bit Score: 734; Significance: 0; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 734; E-Value: 0
Query Start/End: Original strand, 20 - 1100
Target Start/End: Complemental strand, 23814426 - 23813321
Alignment:
Q  20 gtggttcataatgtgggtaccaatttctggaaagacattaaagagacgttccactatgatcagttcattgtggagcagaaatctggaaaatatgtgaatg 119  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||| ||||||||||||||||    
T  23814426 gtggttcataatgtgggtaccaatatctggaaagacattaaagagacattccaatatgatcggttcattgtggagcagaaatcaggaaaatatgtgaatg 23814327  T
Q  120 gcactattaattggttggcttctcaagattatggtaaaagtcaaagttttattgcttcttttgatttgggaaaagagtcttataaaaaagttttgctacc 219  Q
    |||| |||||||||||||||||| |||||||| ||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  23814326 gcacgattaattggttggcttctaaagattatagtaaaggtcaacgttttattgcttcttttgatttgggaaacgagtcttataaaaaagttttgctacc 23814227  T
Q  220 tgattatgattatagagcaatagattcacgtactttgcacttgagtgttttcgggaattgtttgtgctggatttctagtaatgatgtttggataatgaag 319  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23814226 tgattgtgattatagagcaatagattcacttactttgcacttgagtgttttcgggaattgtttgtgctggatttctagtaatgatgtttggataatgaag 23814127  T
Q  320 gaatatgggatgaaagcgtcttggactaaattgttcactattcctttcatgccatcttattatttctttgccaatggaatgcatatttttgaggatggcc 419  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  23814126 gaatatgggatgacagcgtcttggactaaattgttcactattcctttcatgccatcttattatttctttgccaatgtaatgcatatttttgaggatggcc 23814027  T
Q  420 tagtgacgtggaattctacaacggtttcgacccggagctgggttttttacaattctataaatggctttgtaaagttttc---ttttcagtttgaatccat 516  Q
    ||||||||||||| |||||   || ||||| ||  | || |||||||||||||||||||||||||| ||||||||||||   |||||||||||||| |||    
T  23814026 tagtgacgtggaagtctacgcaggattcgatccaaaacttggttttttacaattctataaatggctctgtaaagttttcttattttcagtttgaattcat 23813927  T
Q  517 cctagaagtctgcattgaaagtttgatatcaccttgttcttaatgttagaatgtcgtagtgatgctatatcgcttgaacatgagattcaactaaaaacta 616  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  23813926 cctagaagtctgcgtcgaaagtttgatatcaccttgttcttaatgttagaatgtagtagtgatgctatatcgcttgaacatgagattcaactaagaacta 23813827  T
Q  617 tattttaatttatgtttatgatatttattttgtacttgttctgattattagctacttcatggatcattattaattaatggtcatcttaatctgtagcttg 716  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||  |||||| ||||||||||||||||||||||||||||||    
T  23813826 tattttaatttatgtttatgatatttattttgtacttgttcttattatcagctacttcatgtgtcattactaattaatggtcatcttaatctgtagcttg 23813727  T
Q  717 atagagaaattgtagttattttcatttatttgtttgttaaagatttttattatctcttcatgcattattgcatttcaatttatataattcccagtcatta 816  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  23813726 atagagaaattgtagttattttcatttatttgtttgttaaaggtttttattatctcctcatgcattattgcatttcagtttatataattcccagtcatta 23813627  T
Q  817 gtatgtttggttaaatgcctgctatgagctgcacaaatttcgtaatgtctcaaatctttcacacgctgtccaaaatacttcg------------------ 898  Q
    || |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |                      
T  23813626 gtttgtttggttaaatgcctgctatgagctgtacaaatttcgtaatgtcttaaatctttcacacgctgtccaaaatacttgggattaatcctttgaaggg 23813527  T
Q  899 --atattttggtactgaataattctatcttatttattctattggcatattcatctcgtctctaaatcatggttttaaattcttcaatattttcactgttg 996  Q
       |||||||||| |||| |||  |||||||||||||||||| || | | ||| || ||||  |||| | ||||||| |||||| |||||||||||||||    
T  23813526 aattattttggtagtgaacaatgatatcttatttattctattagcgtgtacatttcctctcgtaatcttagttttaatttcttcgatattttcactgttg 23813427  T
Q  997 cgctcttggtttaaatttctgc---ataatcactttaatttgctgcaatttttaacgtttctgatttgtttgcacaattctgcagtgctttatttcaatg 1093  Q
     | |||||||||||||||||||   ||||||| |||| |||||||||||||||| || ||||| ||||||||||||||||||||||||||| ||| ||||    
T  23813426 tgttcttggtttaaatttctgcataataatcattttagtttgctgcaatttttagcg-ttctgttttgtttgcacaattctgcagtgctttgttttaatg 23813328  T
Q  1094 tgttcat 1100  Q
    |||||||    
T  23813327 tgttcat 23813321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 660; E-Value: 0
Query Start/End: Original strand, 187 - 1100
Target Start/End: Original strand, 23732051 - 23732967
Alignment:
Q  187 gggaaaagagtcttataaaaaagttttgctacct-gattatgattatagagcaatagattcacgtactttgcacttgagtgttttcgggaattgtttgtg 285  Q
    |||||| ||||||||||||||||||||||| ||| ||||||||||| ||| ||||||||||| || |||| ||||||||||||||| |||||||||||||    
T  23732051 gggaaacgagtcttataaaaaagttttgcttccttgattatgattaaagaacaatagattcatgttctttccacttgagtgttttcaggaattgtttgtg 23732150  T
Q  286 ctggatttctagtaatgatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaattgttcactattcctttc-atgccatcttattattt 384  Q
     |||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||| |||| ||||||||||||||||| |||||||   |||||||    
T  23732151 gtggatttctagtaatgatgtttggattatgaaggaatatgggaataaagcgtcttggaataaactgttcactattcctttccatgccat---attattt 23732247  T
Q  385 ctttgccaatggaatgcatat-ttttgaggatggcctagtgacgtggaattctacaacggtttcgacccggagctgggttttttacaattctataaatgg 483  Q
    ||||||||||| ||||||||  ||||||||||||||||||||||||||| ||||||  || ||||||||||| || ||||||||||||||||| ||||||    
T  23732248 ctttgccaatgtaatgcataaattttgaggatggcctagtgacgtggaagtctacacaggattcgacccggaacttggttttttacaattctacaaatgg 23732347  T
Q  484 ctttgtaaagttttctt---ttcagtttgaatccatcctagaagtctgcattgaaagtttgatatcaccttgttcttaatgttagaatgtcgtagtgatg 580  Q
    || ||| ||||||||||   || ||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  23732348 ctctgttaagttttcttattttaagtttgaattcatcctagaagtctgcgttgaaagtttgatattaccttgttcttaatgttagaatgtcgtagtgatg 23732447  T
Q  581 ctatatcgcttgaacatgagattcaactaaaaactatattttaatttatgtttatgatatttattttgtacttgttctgattattagctacttcatggat 680  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |  || |||||||||||||||||||||||||||    
T  23732448 ctatatcgcttgaacatgagattcaactaaaaactatattttaatttatgtttatgatatttatctcgcgctagttctgattattagctacttcatggat 23732547  T
Q  681 cattattaattaatggtcatcttaatctgtagcttgatagagaaattgtagttattttcatttatttgtttgttaaagatttttattatctcttcatgca 780  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  23732548 cattattaattaatggtcatcttaatctgtagcttgatagagaaattgtggttattttcatttatttgtttgttaaaggtttttattatctcttcatgca 23732647  T
Q  781 ttattgcatttcaatttatataattcccagtcattagtatgtttggttaaatgcctgctatgagctgcacaaatttcgtaatgtctcaaatctttcacac 880  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  23732648 ttattgcatttcagtttagataattcccagtcattagtatgtttggttaaatgcctgctatgagctgcataaatttcgtaatgtctcaaatctttcacac 23732747  T
Q  881 gctgtccaaaatacttcgatattttggtactgaataattctatcttatttattctattggcatattcatctcgtctctaaatcatggttttaaattcttc 980  Q
    ||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||| ||| ||||||| |||||||||||||||| ||||||||||||     
T  23732748 gctgtccaaaatacttcgatattttggtactaaataattctatcgtatttgttctataggcgtattcatttcgtctctaaatcatgcttttaaattcttt 23732847  T
Q  981 aatattttcactgttgcgctcttggtttaaatttctgcataatcactttaatttgctgcaatttttaacgtttctgatttgtttgcacaattctgcagtg 1080  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||    
T  23732848 gatattttcactgttgcgctcttggtttaaatttctgcataatcactttaatttgctgcaatatttagcgtttctgttttgtttgcacaattctgcagtg 23732947  T
Q  1081 ctttatttcaatgtgttcat 1100  Q
    ||||||||||| ||||||||    
T  23732948 ctttatttcaacgtgttcat 23732967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 607; E-Value: 0
Query Start/End: Original strand, 24 - 809
Target Start/End: Complemental strand, 23861355 - 23860567
Alignment:
Q  24 ttcataatgtgggtaccaatttctggaaagacattaaagagacgttccactatgatcagttcattgtggagcagaaatctggaaaatatgtgaatggcac 123  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||| |||||||||||||||||| |    
T  23861355 ttcataatgtgggtaccaatatctggaaagacattaaagagacgttccaatatgatgggttcattgtggagcagaaatcgggaaaatatgtgaatggcgc 23861256  T
Q  124 tattaattggttggcttctcaagattatggtaaaagtcaaagttttattgcttcttttgatttgggaaaagagtcttataaaaaagttttgctacctgat 223  Q
     |||||||||||||||||| |||||||| ||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  23861255 gattaattggttggcttctaaagattatagtaaaggtcaacgttttattgcttcttttgatttgggaaacgagtcttataaaaaagttttgctacctgat 23861156  T
Q  224 tatgattatagagcaatagattcacgtactttgcacttgagtgttttcgggaattgtttgtgctggatttctagtaatgatgtttggataatgaaggaat 323  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23861155 tatgattatagagcaatagattcacgtactttgcacttgagtgttttcaggaattgtttgtgctggatttctagtaatgatgtttggataatgaaggaat 23861056  T
Q  324 atgggatgaaagcgtcttggactaaattgttcactattcctttcatgccatcttattatttctttgccaatggaatgcatatttttgaggatggcctagt 423  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  23861055 atgggatgaaagcgtcttggactaaattgttcactattcctttcatgccatcttattatttctttgccaatgtaatgcatatttttgaggatggcctagt 23860956  T
Q  424 gacgtggaattctacaacggtttcgacccggagctgggttttttacaattctataaatggctttgtaaagttttc---ttttcagtttgaatccatccta 520  Q
    ||||||||| ||||||  || ||||||||||| || ||||||||||||||||| |||||||| ||||||||||||   |||||||||| ||| |||||||    
T  23860955 gacgtggaagtctacacaggattcgacccggaacttggttttttacaattctacaaatggctctgtaaagttttcttattttcagtttaaattcatccta 23860856  T
Q  521 gaagtctgcattgaaagtttgatatcaccttgttcttaatgttagaatgtcgtagtgatgctatatcgcttgaacatgagattcaactaaaaactatatt 620  Q
    ||||||||| ||||||||||  ||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  23860855 gaagtctgcgttgaaagtttagtatcaccttattcttaatgttagaatgtagtagtgatgcgatatcgcttgaacatgagattcaactaaaaactatatt 23860756  T
Q  621 ttaatttatgtttatgatatttattttgtacttgttctgattattagctacttcatggatcattattaattaatggtcatcttaatctgtagcttgatag 720  Q
    |||||||||  |||||||||||||||| || ||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||     
T  23860755 ttaatttatacttatgatatttattttataattgttctgattattacctacttcatgggtcattactaattaatggtcatcttaatctgtagcttgataa 23860656  T
Q  721 agaaattgtagttattttcatttatttgtttgttaaagatttttattatctcttcatgcattattgcatttcaatttatataattccca 809  Q
    | |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  23860655 ataaattgtagttattttcatttatttgtttgttaaaggtttttattatctcctcatgcattattgcatttcagtttatataattccca 23860567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 592; E-Value: 0
Query Start/End: Original strand, 338 - 1100
Target Start/End: Original strand, 23729330 - 23730095
Alignment:
Q  338 tcttggactaaattgttcactattcctttcatgccatcttattatttctttgccaatggaatgcatatttttgaggatggcctagtgacgtggaattcta 437  Q
    ||||||||||||||| |||||| ||||||||  |||||||||||| ||||||||| || |||||||| ||||||||||||||||||||||||||| ||||    
T  23729330 tcttggactaaattgctcactactcctttcaacccatcttattatctctttgccattgtaatgcataattttgaggatggcctagtgacgtggaagtcta 23729429  T
Q  438 caacggtttcgacccggagctgggttttttacaattctataaatggctttgtaaagttttctt---ttcagtttgaatccatcctagaagtctgcattga 534  Q
    ||  || ||||||||||| || ||||||||||||||||| |||||||| ||| ||||||||||   || ||||||||| |||||||||||||||| ||||    
T  23729430 cacaggattcgacccggaacttggttttttacaattctacaaatggctctgttaagttttcttattttaagtttgaattcatcctagaagtctgcgttga 23729529  T
Q  535 aagtttgatatcaccttgttcttaatgttagaatgtcgtagtgatgctatatcgcttgaacatgagattcaactaaaaactatattttaatttatgttta 634  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23729530 aagttcgatattaccttgttcttaatgttagaatgtcgtagtgatgctacatcgcttgaacatgagattcaactaaaaactatattttaatttatgttta 23729629  T
Q  635 tgatatttattttgtacttgttctgattattagctacttcatggatcattattaattaatggtcatcttaatctgtagcttgatagagaaattgtagtta 734  Q
    |||||||||| | | ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  23729630 tgatatttatctcgcactagttctgattattagctacttcgtggatcattattaattaatggtcatcttaatctgtagcttgatagagaaattgtggtta 23729729  T
Q  735 ttttcatttatttgtttgttaaagatttttattatctcttcatgcattattgcatttcaatttatataattcccagtcattagtatgtttggttaaatgc 834  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||    
T  23729730 ttttcatttatttgtttgttaaaggtttttattatctcctcatgcattattgcatttcagtttatataattcccagtcattagtatggttggttaaaagc 23729829  T
Q  835 ctgctatgagctgcacaaatttcgtaatgtctcaaatctttcacacgctgtccaaaatacttcgatattttggtactgaataattctatcttatttattc 934  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||    
T  23729830 ctgctatgagctgcacaaatttcgtaatgtctcaaatctttcacacgctgtccaaaatacttcgatattttggtactaaataattctatcgtatttgttc 23729929  T
Q  935 tattggcatattcatctcgtctctaaatcatggttttaaattcttcaatattttcactgttgcgctcttggtttaaatttctgcataatcactttaattt 1034  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23729930 tattggcgtattcatctcgtctctaaatcatggttttaaattcttcaatattttcactgttgcgctcttggtttaaatttctgcataatcactttaattt 23730029  T
Q  1035 gctgcaatttttaacgtttctgatttgtttgcacaattctgcagtgctttatttcaatgtgttcat 1100  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  23730030 gctgcaatatttaacgtttctgttttgtttgcacaattctgcagtgctttatttcaatgtgttcat 23730095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 20 - 756
Target Start/End: Complemental strand, 23769979 - 23769253
Alignment:
Q  20 gtggttcataatgtgggtaccaatttctggaaagacattaaagagacgttccactatgatcagttcattgtggagcagaaatctggaaaatatgtgaatg 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||    
T  23769979 gtggttcataatgtgggtaccaatttctggaaagacattaaagagacgttccaatatgatcggttcattgtggagcagaaatcgggaaaatatgtgaatg 23769880  T
Q  120 gcactattaattggttggcttctcaagattatggtaaaagtcaaagttttattgcttcttttgatttgggaaaagagtcttataaaaaagttttgctacc 219  Q
    |||| |||||||||||||||||| |||||||| ||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  23769879 gcacgattaattggttggcttctaaagattatagtaaaggtcaacgttttattgcttcttttgatttgggaaacgagtcttataaaaaagttttgctacc 23769780  T
Q  220 tgattatgattatagagcaatagattcacgtactttgcacttgagtgttttcgggaattgtttgtgctggatttctagtaatgatgtttggataatgaag 319  Q
     |||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  23769779 ggattatgattatagagaaattggttcacgtactttgcacttgagtgttttcgggaattgtttgtgctggatttgtagtaatgatgtttggattatgaag 23769680  T
Q  320 gaatatgggatgaaagcgtcttggactaaattgttcactattcctttcatgccatcttatt---atttctttgccaatggaatgcatatttttgaggatg 416  Q
    ||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||   || |||||||||||| ||||||||||||||||||||    
T  23769679 gaatatgggaataaagcgtcttggactaaattgttcactatacctttcatgccatcttattatcatctctttgccaatgtaatgcatatttttgaggatg 23769580  T
Q  417 gcctagtgacgtggaattctacaacggtttcgacccggagctgggttttttacaattctataaatggctttgtaaagttttc---ttttcagtttgaatc 513  Q
    |||||||||||||||| |||||   || || |||||||| || |||||||||||||||||||||||||| ||||||||||||   ||||||||||  ||     
T  23769579 gcctagtgacgtggaagtctacgcaggatttgacccggaacttggttttttacaattctataaatggctctgtaaagttttcttattttcagtttagata 23769480  T
Q  514 catcctagaagtctgcattgaaagtttgatatcaccttgttcttaatgttagaatgtcgtagtgatgctatatcgcttgaacatgagattcaactaaaaa 613  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||                |||||||||||||    
T  23769479 catcctagaaatctgcgttgaaagtttgatatcaccttgttcttaatgttagaatgtagttgtgatgctat----------------attcaactaaaaa 23769396  T
Q  614 ctatattttaatttatgtttatgatatttattttgtacttgttctgattattagctacttcatggatcattattaattaatggtcatcttaatctgtagc 713  Q
    ||||||||||||||||||||||||||||||| | | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23769395 ctatattttaatttatgtttatgatatttatctcgcactcgttctgattattagctacttcatggatcattattaattaatggtcatcttaatctgtagc 23769296  T
Q  714 ttgatagagaaattgtagttattttcatttatttgtttgttaa 756  Q
    ||||||||||||||||||||||||||||||||||| |||||||    
T  23769295 ttgatagagaaattgtagttattttcatttatttgattgttaa 23769253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 20 - 756
Target Start/End: Complemental strand, 23819827 - 23819101
Alignment:
Q  20 gtggttcataatgtgggtaccaatttctggaaagacattaaagagacgttccactatgatcagttcattgtggagcagaaatctggaaaatatgtgaatg 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||    
T  23819827 gtggttcataatgtgggtaccaatttctggaaagacattaaagagacgttccaatatgatcggttcattgtggagcagaaatcgggaaaatatgtgaatg 23819728  T
Q  120 gcactattaattggttggcttctcaagattatggtaaaagtcaaagttttattgcttcttttgatttgggaaaagagtcttataaaaaagttttgctacc 219  Q
    |||| |||||||||||||||||| |||||||| ||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  23819727 gcacgattaattggttggcttctaaagattatagtaaaggtcaacgttttattgcttcttttgatttgggaaacgagtcttataaaaaagttttgctacc 23819628  T
Q  220 tgattatgattatagagcaatagattcacgtactttgcacttgagtgttttcgggaattgtttgtgctggatttctagtaatgatgtttggataatgaag 319  Q
     |||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  23819627 ggattatgattatagagaaattggttcacgtactttgcacttgagtgttttcgggaattgtttgtgctggatttgtagtaatgatgtttggattatgaag 23819528  T
Q  320 gaatatgggatgaaagcgtcttggactaaattgttcactattcctttcatgccatcttatt---atttctttgccaatggaatgcatatttttgaggatg 416  Q
    ||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||   || |||||||||||| ||||||||||||||||||||    
T  23819527 gaatatgggaataaagcgtcttggactaaattgttcactatacctttcatgccatcttattatcatctctttgccaatgtaatgcatatttttgaggatg 23819428  T
Q  417 gcctagtgacgtggaattctacaacggtttcgacccggagctgggttttttacaattctataaatggctttgtaaagttttc---ttttcagtttgaatc 513  Q
    |||||||||||||||| |||||   || || |||||||| || |||||||||||||||||||||||||| ||||||||||||   ||||||||||  ||     
T  23819427 gcctagtgacgtggaagtctacgcaggatttgacccggaacttggttttttacaattctataaatggctctgtaaagttttcttattttcagtttagata 23819328  T
Q  514 catcctagaagtctgcattgaaagtttgatatcaccttgttcttaatgttagaatgtcgtagtgatgctatatcgcttgaacatgagattcaactaaaaa 613  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||                |||||||||||||    
T  23819327 catcctagaaatctgcgttgaaagtttgatatcaccttgttcttaatgttagaatgtagttgtgatgctat----------------attcaactaaaaa 23819244  T
Q  614 ctatattttaatttatgtttatgatatttattttgtacttgttctgattattagctacttcatggatcattattaattaatggtcatcttaatctgtagc 713  Q
    ||||||||||||||||||||||||||||||| | | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23819243 ctatattttaatttatgtttatgatatttatctcgcactcgttctgattattagctacttcatggatcattattaattaatggtcatcttaatctgtagc 23819144  T
Q  714 ttgatagagaaattgtagttattttcatttatttgtttgttaa 756  Q
    ||||||||||||||||||||||||||||||||||| |||||||    
T  23819143 ttgatagagaaattgtagttattttcatttatttgattgttaa 23819101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 346 - 1100
Target Start/End: Original strand, 23644474 - 23645253
Alignment:
Q  346 taaattgttcactattcctttcatgccatcttattatttctttgccaatggaatgcatatttttgaggatggcctagtgacgtggaattctacaacggtt 445  Q
    |||||||||| | ||| || |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||  || |    
T  23644474 taaattgttctccattactctcatcccatcttattatttctttgccaatgtaatgcatatttttgaggatggcctagtgacgtggaagtctacacaggat 23644573  T
Q  446 tcgacccggagctgggttttttacaattctataaatggctttgtaaagttttctt---ttcagtttgaatccatcctagaagtctgcattgaaagtttga 542  Q
    |||| ||||| || ||||||||||||||||| |||||||| ||| ||||||||||   |||||||||||| |||||||||||||||| ||||||||||||    
T  23644574 tcgatccggaacttggttttttacaattctacaaatggctctgttaagttttcttattttcagtttgaattcatcctagaagtctgcgttgaaagtttga 23644673  T
Q  543 tatcaccttgttcttaatgttagaatgtcgtagtgatgctatatcgcttgaacatgagattcaactaaaaactatattttaatttatgtttatgatattt 642  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  23644674 tatcaccttgttcttaatgttagaatgtagtagtgatgctatatcgcttgaacatgagattcaactaagaactatattttaatttatgtttatgatattt 23644773  T
Q  643 attttgtacttgttctgattattagctacttcatggatcattattaattaatggtcatcttaatctgtagcttgatagagaaattgtagttattttcatt 742  Q
    || | |  || ||||| ||||| ||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23644774 atctcgcgctagttcttattatcagctacttcatgtgtcattactaattaatggtcatcttaatctgtagcttgatagagaaattgtagttattttcatt 23644873  T
Q  743 tatttgtttgttaaagatttttattatctcttcatgcattattgcatttcaatttatataattcccagtcattagtatgtttggttaaatgcctgctatg 842  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||    
T  23644874 tatttgtttgttaaaggtttttattatctcctcatgcattattgcatttcagtttatataattcccagtcattagtttgtttggttaaatgcctgctatg 23644973  T
Q  843 agctgcacaaatttcgtaatgtctcaaatctttcacacgctgtccaaaatacttcg--------------------atattttggtactgaataattcta 922  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |                     |||||||||| |||| |||  ||    
T  23644974 agctgtacaaatttcgtaatgtcttaaatctttcacacgctgtccaaaatacttgggattaatcctttgaagggaattattttggtagtgaacaatgata 23645073  T
Q  923 tcttatttattctattggcatattcatctcgtctctaaatcatggttttaaattcttcaatattttcactgttgcgctcttggtttaaatttctgc---a 1019  Q
    |||||||||||||||| || | | ||| || ||||  |||| | ||||||| |||||| ||||||||||||||| | |||||||||||||||||||   |    
T  23645074 tcttatttattctattagcgtgtacatttcctctcgtaatcttagttttaatttcttcgatattttcactgttgtgttcttggtttaaatttctgcataa 23645173  T
Q  1020 taatcactttaatttgctgcaatttttaacgtttctgatttgtttgcacaattctgcagtgctttatttcaatgtgttcat 1100  Q
    |||||| |||| |||||||||||||||| || ||||| ||||||||||||||||||||||||||| ||| |||||||||||    
T  23645174 taatcattttagtttgctgcaatttttagcg-ttctgttttgtttgcacaattctgcagtgctttgttttaatgtgttcat 23645253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 28 - 809
Target Start/End: Original strand, 23673459 - 23674244
Alignment:
Q  28 taatgtgggtaccaatttctggaaagacattaaagagacgttccactatgatcagttcattgtggagcaga-aatctggaaaatatgtgaatggcactat 126  Q
    ||||| |||| ||||| ||||| ||||||||| ||||||| |||| ||||||    ||||||||||||||  |||| |||  ||| ||| | ||| | ||    
T  23673459 taatgagggtgccaatatctggtaagacattatagagacgctccaatatgatggtctcattgtggagcagccaatcgggagcataagtggagggcgcgat 23673558  T
Q  127 taattggttggcttctcaagattatggtaaaagtcaaagttttattgcttcttttgatttgggaaaagagtcttataaaaaagttttgctacctgattat 226  Q
     ||||||||||||||| | ||| || |||||||||||  ||||||| ||||||||||||||||||  ||||||||||||||||||||| |||| ||||||    
T  23673559 caattggttggcttctaatgatcatagtaaaagtcaacattttatttcttcttttgatttgggaagcgagtcttataaaaaagttttgttaccagattat 23673658  T
Q  227 gattatagagcaatagattcacgtactttgcacttgagtgttttcgggaattgtttgtgctggatttctagtaatgatgtttggataatgaaggaatatg 326  Q
    ||||||||| ||| ||| ||||| ||||||| | |||||||| || | || ||||| || ||||| |||||||||||||||||||||||||||||| ||     
T  23673659 gattatagaacaacagaatcacgaactttgctcctgagtgttgtcagcaagtgtttttggtggatgtctagtaatgatgtttggataatgaaggaagatt 23673758  T
Q  327 ggatgaaagcgtcttggactaaattgttcactattcctttcatgccatcttattatttctttgccaatggaatgcatatttttgaggatggcctagtgac 426  Q
     || |||| | || ||| ||||||||||| | ||||||||| | ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  23673759 agaagaaaacatcgtggtctaaattgttcgccattcctttcctcccatcctattatttctttgccaatgtaatgcatatttttgaggatggcctagtgac 23673858  T
Q  427 gtggaattctacaacggtttcgacccggagctgggttttttacaattctataaatggctttgtaaagttttctt---ttcagtttgaatccatcctagaa 523  Q
    |||||| ||||||  || ||||||||||| || ||||||||||||||||| |||||||| ||||||||||||||   |||||||| ||| ||||||||||    
T  23673859 gtggaagtctacacaggattcgacccggaacttggttttttacaattctacaaatggctctgtaaagttttcttattttcagtttaaattcatcctagaa 23673958  T
Q  524 gtctgcattgaaagtttgatatcaccttgttcttaatgttagaatgtcgtagtgatgctatatcgcttgaacatgagattcaactaaaaactatatttta 623  Q
    |||||| ||||||||||  ||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  23673959 gtctgcgttgaaagtttagtatcaccttattcttaatgttagaatgtagtagtgatgcgatatcgcttgaacatgagattcaactaaaaactatatttta 23674058  T
Q  624 atttatgtttatgatatttattttgtacttgttctgattattagctacttcatggatcattattaattaatggtcatcttaatctgtagcttgatagaga 723  Q
    ||||||  |||||||||||||||| || ||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||| | |    
T  23674059 atttatacttatgatatttattttataattgttctgattattacctacttcatgggtcattactaattaatggtcatcttaatctgtagcttgataaata 23674158  T
Q  724 aattgtagttattttcatttatttgtttgttaaagatttttattatctcttcatgcattattgcatttcaatttatataattccca 809  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  23674159 aattgtagttattttcatttatttgtttgttaaaggtttttattatctcctcatgcattattgcatttcagtttatataattccca 23674244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 299; E-Value: 1e-167
Query Start/End: Original strand, 20 - 414
Target Start/End: Complemental strand, 23764593 - 23764199
Alignment:
Q  20 gtggttcataatgtgggtaccaatttctggaaagacattaaagagacgttccactatgatcagttcattgtggagcagaaatctggaaaatatgtgaatg 119  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||  ||||||||||||||||||||| ||||||||||||||||    
T  23764593 gtggttcataatgtgggtaccaatttctggaaagacattatagagacgttccaatatgatgggttcattgtggagcagaaatcgggaaaatatgtgaatg 23764494  T
Q  120 gcactattaattggttggcttctcaagattatggtaaaagtcaaagttttattgcttcttttgatttgggaaaagagtcttataaaaaagttttgctacc 219  Q
    || || ||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  23764493 gcgcttttaattggttggcttctaaagattatggtaaaggtcaatgttttattgcttcttttgatttgggaaacgagtcttataaaaaagttttgctacc 23764394  T
Q  220 tgattatgattatagagcaatagattcacgtactttgcacttgagtgttttcgggaattgtttgtgctggatttctagtaatgatgtttggataatgaag 319  Q
     |||||||||||||||| | | |||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  23764393 ggattatgattatagagaatttgattcacgtactttgcacttgattgttttccggaattgtttgtgctggatttgtagtaatgatgtttggataatgaag 23764294  T
Q  320 gaatatgggatgaaagcgtcttggactaaattgttcactattcctttcatgccatcttattatttctttgccaatggaatgcatatttttgagga 414  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||| ||||| || |||||||||    
T  23764293 gaatatgggatgaaagcgtcttggactacattgttcactattcctttcatgccatcttattatttcttttctaatgaaatgcttaattttgagga 23764199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 153; E-Value: 2e-80
Query Start/End: Original strand, 811 - 1100
Target Start/End: Complemental strand, 23780417 - 23780108
Alignment:
Q  811 tcattagtatgtttggttaaatgcctgctatgagctgcacaaatttcgtaatgtctcaaatctttcacacgctgtccaaaatacttcga----------- 899  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |                
T  23780417 tcattagtatgtttggttaaatgtctgctatgagccgcacaaatttcgtaatgtctcaaatctttcacacgctgtacaaaatacttggggttaaactttt 23780318  T
Q  900 ---------tattttggtactgaataattctatcttatttattctattggcatattcatctcgtctctaaatcatggttttaaattcttcaatattttca 990  Q
             ||||||| ||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||| | |||| |||||||||    
T  23780317 gaagggaattattttgctactgaataatgctatcttatttattctattggcgtattcatctcctctctaaatcatggttttaattacttcgatattttca 23780218  T
Q  991 ctgttgcgctcttggtttaaatttctgcataatcactttaatttgctgcaatttttaacgtttctgatttgtttgcacaattctgcagtgctttatttca 1090  Q
    |||| ||| ||||||||||||||||| ||||||||||| | ||||||||||||||   |||||||| |||||||||||| |||||| |||||||||||||    
T  23780217 ctgtcgcgttcttggtttaaatttcttcataatcacttcagtttgctgcaattttcggcgtttctgttttgtttgcacatttctgctgtgctttatttca 23780118  T
Q  1091 atgtgttcat 1100  Q
    ||||||||||    
T  23780117 atgtgttcat 23780108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 153; E-Value: 2e-80
Query Start/End: Original strand, 811 - 1100
Target Start/End: Complemental strand, 23867370 - 23867061
Alignment:
Q  811 tcattagtatgtttggttaaatgcctgctatgagctgcacaaatttcgtaatgtctcaaatctttcacacgctgtccaaaatacttcga----------- 899  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |                
T  23867370 tcattagtatgtttggttaaatgtctgctatgagccgcacaaatttcgtaatgtctcaaatctttcacacgctgtacaaaatacttggggttaaactttt 23867271  T
Q  900 ---------tattttggtactgaataattctatcttatttattctattggcatattcatctcgtctctaaatcatggttttaaattcttcaatattttca 990  Q
             ||||||| ||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||| | |||| |||||||||    
T  23867270 gaagggaattattttgctactgaataatgctatcttatttattctattggcgtattcatctcctctctaaatcatggttttaattacttcgatattttca 23867171  T
Q  991 ctgttgcgctcttggtttaaatttctgcataatcactttaatttgctgcaatttttaacgtttctgatttgtttgcacaattctgcagtgctttatttca 1090  Q
    |||| ||| ||||||||||||||||| ||||||||||| | ||||||||||||||   |||||||| |||||||||||| |||||| |||||||||||||    
T  23867170 ctgtcgcgttcttggtttaaatttcttcataatcacttcagtttgctgcaattttcggcgtttctgttttgtttgcacatttctgctgtgctttatttca 23867071  T
Q  1091 atgtgttcat 1100  Q
    ||||||||||    
T  23867070 atgtgttcat 23867061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 130; E-Value: 8e-67
Query Start/End: Original strand, 811 - 1097
Target Start/End: Complemental strand, 23769167 - 23768862
Alignment:
Q  811 tcattagtatgtttggttaaatgcctgctatgagctgcacaaatttcgtaatgtctcaaatctttcacacgctgtccaaaatacttcga----------- 899  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |                
T  23769167 tcattagtatgtttggttaaatgcctgctatgagccgcacaaatttcgtaatgtctcaaatctttcacacgttgtccaaaatacttggggttaaaccttt 23769068  T
Q  900 ---------tattttggtactgaataattctatcttatttattctattggcatattcatctcgtctctaaatcatggttttaaattcttcaatattttca 990  Q
             ||||||||| ||||||||| |||||||| |||||||||| || | ||||| || ||||  |||| ||||||||| |||||| ||||||| |    
T  23769067 gaaggtaattattttggt-ctgaataatgctatcttaattattctattagcgtgttcatttcctctcgtaatcttggttttaatttcttcgatattttaa 23768969  T
Q  991 ctgttgcgctcttggtttaaatttctgcataatcactttaatttgctgcaatttttaacgtttctgatttgtttgcacaattctgcagtgctttatttca 1090  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||| |||| ||||||| | |||||||||    
T  23768968 ctgttgcgttcttggtttaaatttctgcataatcactttaatttgctgcaatttttagtgtttctgttttgtttgaacaagtctgcagcggtttatttca 23768869  T
Q  1091 atgtgtt 1097  Q
    | |||||    
T  23768868 aggtgtt 23768862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 130; E-Value: 8e-67
Query Start/End: Original strand, 811 - 1097
Target Start/End: Complemental strand, 23819015 - 23818710
Alignment:
Q  811 tcattagtatgtttggttaaatgcctgctatgagctgcacaaatttcgtaatgtctcaaatctttcacacgctgtccaaaatacttcga----------- 899  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |                
T  23819015 tcattagtatgtttggttaaatgcctgctatgagccgcacaaatttcgtaatgtctcaaatctttcacacgttgtccaaaatacttggggttaaaccttt 23818916  T
Q  900 ---------tattttggtactgaataattctatcttatttattctattggcatattcatctcgtctctaaatcatggttttaaattcttcaatattttca 990  Q
             ||||||||| ||||||||| |||||||| |||||||||| || | ||||| || ||||  |||| ||||||||| |||||| ||||||| |    
T  23818915 gaaggtaattattttggt-ctgaataatgctatcttaattattctattagcgtgttcatttcctctcgtaatcttggttttaatttcttcgatattttaa 23818817  T
Q  991 ctgttgcgctcttggtttaaatttctgcataatcactttaatttgctgcaatttttaacgtttctgatttgtttgcacaattctgcagtgctttatttca 1090  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||| |||| ||||||| | |||||||||    
T  23818816 ctgttgcgttcttggtttaaatttctgcataatcactttaatttgctgcaatttttagtgtttctgttttgtttgaacaagtctgcagcggtttatttca 23818717  T
Q  1091 atgtgtt 1097  Q
    | |||||    
T  23818716 aggtgtt 23818710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 104; E-Value: 3e-51
Query Start/End: Original strand, 24 - 226
Target Start/End: Complemental strand, 23774402 - 23774201
Alignment:
Q  24 ttcataatgtgggtaccaatttctggaaagacattaaagagacgttccactatgatcagttcattgtggagcagaaatctggaaaatatgtgaatggcac 123  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||| |||||||||||||||||| |    
T  23774402 ttcataatgtgggtaccaatatctggaaagacattaaagagacgttccaatatgatgggttcattgtggagcagaaatcgggaaaatatgtgaatggcgc 23774303  T
Q  124 tattaattggttggcttctcaagattatggtaaaagtcaaagttttattgcttcttttgatttgggaaaa-gagtcttataaaaaagttttgctacctga 222  Q
     | || | ||||||||| | |||||||| ||||||||||| |||||| || ||||||||||| |||||||  ||||||| |||||||||||| |||| ||    
T  23774302 gaatattgggttggcttttaaagattat-gtaaaagtcaacgtttta-tggttcttttgattggggaaaacaagtcttaaaaaaaagttttggtacccga 23774205  T
Q  223 ttat 226  Q
    ||||    
T  23774204 ttat 23774201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 78; E-Value: 9e-36
Query Start/End: Original strand, 900 - 1094
Target Start/End: Original strand, 23674425 - 23674630
Alignment:
Q  900 tattttggtactgaataattctatcttatttattctattggcatattcatctcgtctcta-------aatcatggttttaaattcttcaatattttcact 992  Q
    ||||||||||||||| ||| | |||||||||| |||||| || | ||||| || |||| |       |||| ||||||||| |||||| |||||||||||    
T  23674425 tattttggtactgaacaatgcaatcttatttactctatttgcgtgttcatttcctctcgactctcgtaatcttggttttaatttcttcgatattttcact 23674524  T
Q  993 gttgcgctcttggtttaaa-tttctgcataat---cactttaatttgctgcaatttttaacgtttctgatttgtttgcacaattctgcagtgctttattt 1088  Q
    |||||| |||||||||||| ||||||||||||   || |||| |||||||||||||||| | |||||| |||||||||||||||||||||||||||||||    
T  23674525 gttgcgttcttggtttaaaatttctgcataataatcagtttagtttgctgcaatttttagcatttctgttttgtttgcacaattctgcagtgctttattt 23674624  T
Q  1089 caatgt 1094  Q
     |||||    
T  23674625 taatgt 23674630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 78; E-Value: 9e-36
Query Start/End: Original strand, 900 - 1094
Target Start/End: Complemental strand, 23860386 - 23860181
Alignment:
Q  900 tattttggtactgaataattctatcttatttattctattggcatattcatctcgtctcta-------aatcatggttttaaattcttcaatattttcact 992  Q
    ||||||||||||||| ||| | |||||||||| |||||| || | ||||| || |||| |       |||| ||||||||| |||||| |||||||||||    
T  23860386 tattttggtactgaacaatgcaatcttatttactctatttgcgtgttcatttcctctcgactctcgtaatcttggttttaatttcttcgatattttcact 23860287  T
Q  993 gttgcgctcttggtttaaa-tttctgcataat---cactttaatttgctgcaatttttaacgtttctgatttgtttgcacaattctgcagtgctttattt 1088  Q
    |||||| |||||||||||| ||||||||||||   || |||| |||||||||||||||| | |||||| |||||||||||||||||||||||||||||||    
T  23860286 gttgcgttcttggtttaaaatttctgcataataatcagtttagtttgctgcaatttttagcatttctgttttgtttgcacaattctgcagtgctttattt 23860187  T
Q  1089 caatgt 1094  Q
     |||||    
T  23860186 taatgt 23860181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 22 - 219
Target Start/End: Complemental strand, 23754370 - 23754168
Alignment:
Q  22 ggttcataatgtgggtaccaatttctggaaagacattaaagagacgttccactatgat-cagttcattgtggagcagaaatctggaaaatatgtgaatgg 120  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||| ||||| |||||| ||||||||||    
T  23754370 ggttcataatgcggggaccaatttctggaaagacattaaagagacgttccaatatgattcggttcattgtggagcaaaaatcgggaaaaaatgtgaatgg 23754271  T
Q  121 cactattaattggttgg-cttctcaagattatggtaaaagtcaaagttttatt-gcttcttttgatttgggaaaagagt-cttataaaaaa-gttttgct 216  Q
    ||| || |||||||||| ||||  |||| ||  | ||| | ||| |||||||| | ||||||||||| |||||| |||| |||| |||||| ||||||||    
T  23754270 cacgataaattggttgggcttccaaagaataaagaaaagggcaacgttttatttgtttcttttgattggggaaacgagttcttaaaaaaaaagttttgct 23754171  T
Q  217 acc 219  Q
    |||    
T  23754170 acc 23754168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 811 - 880
Target Start/End: Original strand, 23674318 - 23674387
Alignment:
Q  811 tcattagtatgtttggttaaatgcctgctatgagctgcacaaatttcgtaatgtctcaaatctttcacac 880  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  23674318 tcatttgtatgtttggttaaatgccttctatgagctgcacaaatttcgtaatgtctcaaatctttcacac 23674387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 811 - 880
Target Start/End: Complemental strand, 23860493 - 23860424
Alignment:
Q  811 tcattagtatgtttggttaaatgcctgctatgagctgcacaaatttcgtaatgtctcaaatctttcacac 880  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  23860493 tcatttgtatgtttggttaaatgccttctatgagctgcacaaatttcgtaatgtctcaaatctttcacac 23860424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 240 - 361
Target Start/End: Complemental strand, 23766975 - 23766854
Alignment:
Q  240 tagattcacgtactttgcacttgagtgttttcgggaattgtttgtgctggatttctagtaatgatgtttggataatgaaggaatatgggatgaaagcgtc 339  Q
    ||||||| | |||||||||||||||| ||| | ||||||||||||||    ||||| |||||||||||||||| ||||| |||||||| |  |||| |||    
T  23766975 tagattcgcatactttgcacttgagtttttgcaggaattgtttgtgcctcgtttctggtaatgatgtttggattatgaaagaatatggaaataaagagtc 23766876  T
Q  340 ttggactaaattgttcactatt 361  Q
    ||||||||||||||||||||||    
T  23766875 ttggactaaattgttcactatt 23766854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 240 - 361
Target Start/End: Complemental strand, 23816823 - 23816702
Alignment:
Q  240 tagattcacgtactttgcacttgagtgttttcgggaattgtttgtgctggatttctagtaatgatgtttggataatgaaggaatatgggatgaaagcgtc 339  Q
    ||||||| | |||||||||||||||| ||| | ||||||||||||||    ||||| |||||||||||||||| ||||| |||||||| |  |||| |||    
T  23816823 tagattcgcatactttgcacttgagtttttgcaggaattgtttgtgcctcgtttctggtaatgatgtttggattatgaaagaatatggaaataaagagtc 23816724  T
Q  340 ttggactaaattgttcactatt 361  Q
    ||||||||||||||||||||||    
T  23816723 ttggactaaattgttcactatt 23816702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 737 - 809
Target Start/End: Complemental strand, 23780554 - 23780483
Alignment:
Q  737 ttcatttatttgtttgttaaagatttttattatctcttcatgcattattgcatttcaatttatataattccca 809  Q
    ||||| |||||||||||||||| ||||||||||||| |||||||||||||||||| | |||||||| ||||||    
T  23780554 ttcatatatttgtttgttaaaggtttttattatctcctcatgcattattgcattt-agtttatatagttccca 23780483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 737 - 809
Target Start/End: Complemental strand, 23867507 - 23867436
Alignment:
Q  737 ttcatttatttgtttgttaaagatttttattatctcttcatgcattattgcatttcaatttatataattccca 809  Q
    ||||| |||||||||||||||| ||||||||||||| |||||||||||||||||| | |||||||| ||||||    
T  23867507 ttcatatatttgtttgttaaaggtttttattatctcctcatgcattattgcattt-agtttatatagttccca 23867436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 722 - 792
Target Start/End: Original strand, 23687221 - 23687291
Alignment:
Q  722 gaaattgtagttattttcatttatttgtttgttaaagatttttattatctcttcatgcattattgcatttc 792  Q
    |||||||||||||||||||  ||||||||||| |||| ||| | |||||||  ||||||||||||||||||    
T  23687221 gaaattgtagttattttcacctatttgtttgtaaaaggtttatgttatctcagcatgcattattgcatttc 23687291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 722 - 792
Target Start/End: Original strand, 23737202 - 23737272
Alignment:
Q  722 gaaattgtagttattttcatttatttgtttgttaaagatttttattatctcttcatgcattattgcatttc 792  Q
    |||||||||||||||||||  ||||||||||| |||| ||| | |||||||  ||||||||||||||||||    
T  23737202 gaaattgtagttattttcacctatttgtttgtaaaaggtttatgttatctcagcatgcattattgcatttc 23737272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 462 - 752
Target Start/End: Complemental strand, 23766762 - 23766469
Alignment:
Q  462 ttttttacaattctataaatggctttgtaaagttttct---tttcagtttgaatccatcctagaagtctgcattgaaagtttgatatcaccttgttctta 558  Q
    ||||||||||||||||| |||| | | |||||||  ||   ||||||||||||  || |  ||| |||||| |||| || ||||||||||||||||||||    
T  23766762 ttttttacaattctatagatggttctttaaagttccctcggtttcagtttgaaagcacctcagaggtctgcgttgagagcttgatatcaccttgttctta 23766663  T
Q  559 atgttagaatgtcgtagtgatgctatatcgcttgaacatgagattcaac-taaaaactatatttt--aatttatgtttatgatatttattttgtacttg- 654  Q
    |||||| |||||  | |||||| |||  |  |||||||||||||||||| || ||||||||| ||  ||||| |||  |||   | ||| |||||||||     
T  23766662 atgttaaaatgtaat-gtgatgatatgccatttgaacatgagattcaacatagaaactatatcttaaaatttgtgtcaatg--gtgtatcttgtacttgt 23766566  T
Q  655 -ttctgattattagctactt-catggatcattattaattaatggtcatcttaatctgtagcttgatagagaaattgtagttattttcatttatttgtttg 752  Q
     || | |||||||| |||||  ||   | |||||||||||| ||||||||||||||  || |||||| ||||||||| ||||||||||  ||||||||||    
T  23766565 tttttcattattagttacttgtat---tgattattaattaaaggtcatcttaatctacagtttgataaagaaattgttgttattttcacctatttgtttg 23766469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 462 - 752
Target Start/End: Complemental strand, 23816610 - 23816317
Alignment:
Q  462 ttttttacaattctataaatggctttgtaaagttttct---tttcagtttgaatccatcctagaagtctgcattgaaagtttgatatcaccttgttctta 558  Q
    ||||||||||||||||| |||| | | |||||||  ||   ||||||||||||  || |  ||| |||||| |||| || ||||||||||||||||||||    
T  23816610 ttttttacaattctatagatggttctttaaagttccctcggtttcagtttgaaagcacctcagaggtctgcgttgagagcttgatatcaccttgttctta 23816511  T
Q  559 atgttagaatgtcgtagtgatgctatatcgcttgaacatgagattcaac-taaaaactatatttt--aatttatgtttatgatatttattttgtacttg- 654  Q
    |||||| |||||  | |||||| |||  |  |||||||||||||||||| || ||||||||| ||  ||||| |||  |||   | ||| |||||||||     
T  23816510 atgttaaaatgtaat-gtgatgatatgccatttgaacatgagattcaacatagaaactatatcttaaaatttgtgtcaatg--gtgtatcttgtacttgt 23816414  T
Q  655 -ttctgattattagctactt-catggatcattattaattaatggtcatcttaatctgtagcttgatagagaaattgtagttattttcatttatttgtttg 752  Q
     || | |||||||| |||||  ||   | |||||||||||| ||||||||||||||  || |||||| ||||||||| ||||||||||  ||||||||||    
T  23816413 tttttcattattagttacttgtat---tgattattaattaaaggtcatcttaatctacagtttgataaagaaattgttgttattttcacctatttgtttg 23816317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 294 - 370
Target Start/End: Original strand, 11081805 - 11081881
Alignment:
Q  294 ctagtaatgatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaattgttcactattcctttcatg 370  Q
    ||||| ||||||||||| | |||||||| ||||| |  |||| |||||||||||||||||| |||||||||| ||||    
T  11081805 ctagtgatgatgtttgggttatgaaggagtatggaaataaagagtcttggactaaattgtttactattccttacatg 11081881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 351
Target Start/End: Original strand, 20292995 - 20293044
Alignment:
Q  302 gatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaatt 351  Q
    ||||||||||| |||||||||||||| || |||| |||||||||||||||    
T  20292995 gatgtttggattatgaaggaatatggaattaaagagtcttggactaaatt 20293044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 633 - 695
Target Start/End: Complemental strand, 16947896 - 16947834
Alignment:
Q  633 tatgatatttattttgtacttgttctgattattagctacttcatggatcattattaattaatg 695  Q
    |||| ||||||||| ||||||||||| || ||| |  ||||||||||||||| ||||||||||    
T  16947896 tatgttatttatttcgtacttgttctaatcattggtgacttcatggatcattgttaattaatg 16947834  T

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Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 302 - 351
Target Start/End: Original strand, 20301443 - 20301492
Alignment:
Q  302 gatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaatt 351  Q
    ||||||||||| |||||||||||||  || |||| |||||||||||||||    
T  20301443 gatgtttggattatgaaggaatatgcaattaaagagtcttggactaaatt 20301492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 302 - 351
Target Start/End: Original strand, 20305856 - 20305905
Alignment:
Q  302 gatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaatt 351  Q
    ||||| ||||| |||||||||||||| || |||| |||||||||||||||    
T  20305856 gatgtctggattatgaaggaatatggaattaaagagtcttggactaaatt 20305905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 302 - 351
Target Start/End: Original strand, 20310260 - 20310309
Alignment:
Q  302 gatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaatt 351  Q
    ||||| ||||| |||||||||||||| || |||| |||||||||||||||    
T  20310260 gatgtctggattatgaaggaatatggaattaaagagtcttggactaaatt 20310309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 8e-27; HSPs: 42)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 527 - 754
Target Start/End: Complemental strand, 1940399 - 1940176
Alignment:
Q  527 tgcattgaaagtttgatatcaccttgttcttaatgttagaatgtcgtagtgatgctatatcgcttgaacatgagattcaactaaaaactatattttaatt 626  Q
    |||||||| ||||||||||||||||||||||| || || ||||| |  ||| | ||||||| | |||  |||||| | ||||| |   ||||| ||||||    
T  1940399 tgcattgagagtttgatatcaccttgttcttagtgctataatgtagacgtggttctatatcacatgagaatgagactaaactagactttatatgttaatt 1940300  T
Q  627 tatgtttatgatatttattttgtacttgttctgattattagctacttcatggatcattattaattaatggtcatcttaatctgtagcttgatagagaaat 726  Q
    | |||||||| ||||| |||| || |||||||||||||| | |||||||||||||||| | || |||||  ||| | ||| ||||||||    |||||||    
T  1940299 tctgtttatggtatttgttttttatttgttctgattattggttacttcatggatcattgtcaagtaatgtccatttgaatatgtagctt----gagaaat 1940204  T
Q  727 tgtagttattttcatttatttgtttgtt 754  Q
    |||||||||||| | |||||||||||||    
T  1940203 tgtagttatttttacttatttgtttgtt 1940176  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 531 - 689
Target Start/End: Original strand, 2932153 - 2932311
Alignment:
Q  531 ttgaaagtttgatatcaccttgttcttaatgttagaatgtcgtagtgatgctatatcgcttgaacatgagattcaactaaaaactatattttaatttatg 630  Q
    |||| |||||||||||||||||||||||||| |||||||  |  |||  |||||||| |||||   ||||| | |||||||| || ||| | ||||| |     
T  2932153 ttgagagtttgatatcaccttgttcttaatgctagaatgcagatgtggggctatatcacttgagagtgagactaaactaaaacctttatgtcaatttcta 2932252  T
Q  631 tttatgatatttattttgtacttgttctgattattagctacttcatggatcattattaa 689  Q
    |||| |||||||||||||||||||||||||| ||| | |||||||||||| ||| ||||    
T  2932253 tttaggatatttattttgtacttgttctgatgattggttacttcatggattattgttaa 2932311  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 504 - 655
Target Start/End: Original strand, 997784 - 997935
Alignment:
Q  504 agtttgaatccatcctagaagtctgcattgaaagtttgatatcaccttgttcttaatgttagaatgtcgtagtgatgctatatcgcttgaacatgagatt 603  Q
    |||||||| ||| || |||||||||| |||| ||||| ||||| | || ||||||||| ||| |||| |  | | |||||| || |||||  |||| |||    
T  997784 agtttgaacccaacccagaagtctgcgttgagagtttaatatcccttttttcttaatgctagtatgttgatgaggtgctatgtcacttgagtatgatatt 997883  T
Q  604 caactaaaaactatattttaatttatgtttatgatatttattttgtacttgt 655  Q
     ||||| |  |||||| |||||||||||||||||||||||||||||||||||    
T  997884 taactagagcctatatgttaatttatgtttatgatatttattttgtacttgt 997935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 615 - 677
Target Start/End: Original strand, 1027798 - 1027860
Alignment:
Q  615 tatattttaatttatgtttatgatatttattttgtacttgttctgattattagctacttcatg 677  Q
    ||||| |||||||||||||||||||||||||||||||||||||| |||||| | |||||||||    
T  1027798 tatatgttaatttatgtttatgatatttattttgtacttgttctcattattggttacttcatg 1027860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 520 - 696
Target Start/End: Original strand, 989623 - 989798
Alignment:
Q  520 agaagtctgcattgaaagtttgatatcaccttgttcttaatgttagaatgtcgtagtgatgctatatcgcttgaacatgagattcaactaaaaactatat 619  Q
    ||||||||||||||| ||||| ||||||||||||| |||||||||   ||| |  | | ||| ||    ||||| ||||||||| ||||| || | ||||    
T  989623 agaagtctgcattgagagtttaatatcaccttgtttttaatgttaacttgtagatgcggtgcaatgagacttgagcatgagatttaactagaacccatat 989722  T
Q  620 tttaatttatgtttatgatatttattttgtacttgttctgattattagctacttcatggatcattattaattaatgg 696  Q
     ||||||||||| ||||||||| |||||||| |||  ||||||||| | ||||||||| |||||| ||||| |||||    
T  989723 gttaatttatgtctatgatattcattttgtatttg-cctgattattggttacttcatgaatcattgttaatcaatgg 989798  T

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Target: chr3; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 520 - 684
Target Start/End: Original strand, 1022695 - 1022859
Alignment:
Q  520 agaagtctgcattgaaagtttgatatcaccttgttcttaatgttagaatgtcgtagtgatgctatatcgcttgaacatgagattcaactaaaaactatat 619  Q
    |||||| ||| |||| ||||| ||||| |||||| ||||||| |||  ||| |  | | |||||| || ||||| ||||| ||  ||||  || ||||||    
T  1022695 agaagtgtgcgttgagagtttaatatcgccttgtccttaatgctagtttgtagatgaggtgctatgtcccttgagcatgaaatctaactggaacctatat 1022794  T
Q  620 tttaatttatgtttatgatatttattttgtacttgttctgattattagctacttcatggatcatt 684  Q
     |||||||| ||||||||||||||||||| ||||||||||||||||   ||||||||| ||||||    
T  1022795 gttaatttacgtttatgatatttattttgaacttgttctgattattgattacttcatgaatcatt 1022859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 504 - 655
Target Start/End: Original strand, 1014174 - 1014325
Alignment:
Q  504 agtttgaatccatcctagaagtctgcattgaaagtttgatatcaccttgttcttaatgttagaatgtcgtagtgatgctatatcgcttgaacatgagatt 603  Q
    |||||||| ||| || |||||||||| |||| ||||| ||||| | || ||||||||| ||| |||| |  | | |||||| || |||||  |||| |||    
T  1014174 agtttgaacccaacccagaagtctgcgttgagagtttaatatcccttttttcttaatgctagtatgttgatgaggtgctatgtcacttgagtatgatatt 1014273  T
Q  604 caactaaaaactatattttaatttatgtttatgatatttattttgtacttgt 655  Q
     ||||| |  |||||| ||||||||||| |||||||||||||||||||||||    
T  1014274 taactagagcctatatgttaatttatgtatatgatatttattttgtacttgt 1014325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 614 - 684
Target Start/End: Original strand, 1007761 - 1007831
Alignment:
Q  614 ctatattttaatttatgtttatgatatttattttgtacttgttctgattattagctacttcatggatcatt 684  Q
    |||||| |||||||| ||||||||||||||||||| ||||||||||||||||   ||||||||| ||||||    
T  1007761 ctatatgttaatttacgtttatgatatttattttgaacttgttctgattattgattacttcatgaatcatt 1007831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 300 - 370
Target Start/End: Complemental strand, 4142187 - 4142117
Alignment:
Q  300 atgatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaattgttcactattcctttcatg 370  Q
    ||||||||||| | |||||||||||||| |  |||| ||||||||||||||||||||||||||||| ||||    
T  4142187 atgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatg 4142117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 531 - 689
Target Start/End: Complemental strand, 1889408 - 1889244
Alignment:
Q  531 ttgaaagtttgatatcaccttgttcttaatgttagaatgtcgtagtgatgctatatcgcttgaacatgagattcaactaaaaactatattttaatttatg 630  Q
    |||| |||||||||||||||||||||||||| |||||||| |  ||| |||||| || |||||   ||||| | | |||||| || ||| | ||||| ||    
T  1889408 ttgagagtttgatatcaccttgttcttaatgctagaatgtagatgtggtgctatgtcacttgagagtgagactaatctaaaacctttatgtcaatttttg 1889309  T
Q  631 ttta------tgatatttattttgtacttgttctgattattagctacttcatggatcattattaa 689  Q
    ||||      | ||||||||||||||||||||||||||||| | ||||||| |||| ||| ||||    
T  1889308 tttaggatatttatatttattttgtacttgttctgattattggttacttcagggattattgttaa 1889244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 370
Target Start/End: Original strand, 3754558 - 3754668
Alignment:
Q  260 ttgagtgttttcgggaattgtttgtgctggatttctagtaatgatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaattgttcacta 359  Q
    |||||||||||  || |||| ||||||  || |||| ||  |||||||||| | |||||||||||||| |  |||| |||||||||||||||||| ||||    
T  3754558 ttgagtgttttgagggattgcttgtgcgtgacttctggtgttgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaattgtttacta 3754657  T
Q  360 ttcctttcatg 370  Q
    |||||| ||||    
T  3754658 ttccttgcatg 3754668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 521 - 561
Target Start/End: Original strand, 956612 - 956652
Alignment:
Q  521 gaagtctgcattgaaagtttgatatcaccttgttcttaatg 561  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  956612 gaagtctgctttgaaagtttgatatcaccttgttcttaatg 956652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 300 - 360
Target Start/End: Complemental strand, 4157997 - 4157937
Alignment:
Q  300 atgatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaattgttcactat 360  Q
    ||||||||||| | |||||||||||||| |  |||| ||||||||||||||||||||||||    
T  4157997 atgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactat 4157937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 522 - 654
Target Start/End: Complemental strand, 7431879 - 7431747
Alignment:
Q  522 aagtctgcattgaaagtttgatatcaccttgttcttaatgttagaatgtcgtagtgatgctatatcgcttgaacatgagattcaactaaaaactatattt 621  Q
    |||| |||||||| ||||||||||| |||||||||||  | ||| |||| |  |   ||||||||| ||| | ||||||||||||  | || |||| | |    
T  7431879 aagtttgcattgagagtttgatatctccttgttcttaccgctaggatgtagatgctgtgctatatcacttaagcatgagattcaaaaataacctatgtgt 7431780  T
Q  622 taatttatgtttatgatatttattttgtacttg 654  Q
    ||||||||||||||| |||||||||| ||||||    
T  7431779 taatttatgtttatgctatttattttttacttg 7431747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 361
Target Start/End: Original strand, 956325 - 956440
Alignment:
Q  246 cacgtactttgcacttgagtgttttcgggaattgtttgtgctggatttctagtaatgatgtttggataatgaaggaatatgggatgaaagcgtcttggac 345  Q
    ||||| ||||| |||||||||||||| || |||| ||||||  ||||| | ||   ||||||||||| |||||||||||||| |  |||| |||||||      
T  956325 cacgttctttgaacttgagtgttttcagggattgcttgtgcatgatttttggttgcgatgtttggattatgaaggaatatggaaaaaaagagtcttggca 956424  T
Q  346 taaattgttcactatt 361  Q
    ||||||||||| ||||    
T  956425 taaattgttcattatt 956440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 365
Target Start/End: Complemental strand, 2686409 - 2686300
Alignment:
Q  259 cttgagtgttttcgggaattgtttgtgctggatttctagtaatgatgtttgg---ataatgaaggaatatgggatgaaagcgtcttggactaaattgttc 355  Q
    |||| |||||||  || |||||||||||| ||| | | || |||||||||||   || |||||||||||||| |  |||| |||||||| ||||||||||    
T  2686409 cttgggtgttttgagggattgtttgtgcttgatctgtggtgatgatgtttgggttattatgaaggaatatggaaaaaaagagtcttggaataaattgttc 2686310  T
Q  356 actattcctt 365  Q
    ||||||||||    
T  2686309 actattcctt 2686300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 531 - 633
Target Start/End: Complemental strand, 1890874 - 1890772
Alignment:
Q  531 ttgaaagtttgatatcaccttgttcttaatgttagaatgtcgtagtgatgctatatcgcttgaacatgagattcaactaaaaactatattttaatttatg 630  Q
    |||| ||||||||||| |||||||||||||| |||||||| |  ||| | |||| || |||||   ||||||| |||||||| |||||||| ||||| ||    
T  1890874 ttgagagtttgatatcgccttgttcttaatgctagaatgtagatgtggtactatgtcacttgagagtgagattaaactaaaacctatatttcaatttctg 1890775  T
Q  631 ttt 633  Q
    |||    
T  1890774 ttt 1890772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 300 - 358
Target Start/End: Complemental strand, 2696785 - 2696727
Alignment:
Q  300 atgatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaattgttcact 358  Q
    ||||||||||||| |||||||||||||| |  |||| |||||||| |||||||||||||    
T  2696785 atgatgtttggattatgaaggaatatggaaataaagagtcttggattaaattgttcact 2696727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 361
Target Start/End: Original strand, 1007459 - 1007520
Alignment:
Q  300 atgatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaattgttcactatt 361  Q
    ||||||||||| |||||||||||||||| |  || | ||| |||||||||||||||||||||    
T  1007459 atgatgtttgggtaatgaaggaatatggaaataacgagtcctggactaaattgttcactatt 1007520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 361
Target Start/End: Original strand, 1022487 - 1022548
Alignment:
Q  300 atgatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaattgttcactatt 361  Q
    ||||||||||| |||||||||||||||| |  || | ||| |||||||||||||||||||||    
T  1022487 atgatgtttgggtaatgaaggaatatggaaataacgagtcatggactaaattgttcactatt 1022548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 521 - 570
Target Start/End: Complemental strand, 1936806 - 1936757
Alignment:
Q  521 gaagtctgcattgaaagtttgatatcaccttgttcttaatgttagaatgt 570  Q
    ||||||||| |||| ||||||||||||||||||| |||||| ||||||||    
T  1936806 gaagtctgcgttgagagtttgatatcaccttgtttttaatgctagaatgt 1936757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 365
Target Start/End: Original strand, 3746006 - 3746071
Alignment:
Q  300 atgatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaattgttcactattcctt 365  Q
    ||||| ||||||| |||||||||||||  | | ||| |||||||||||||||||| ||||||||||    
T  3746006 atgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattgttgactattcctt 3746071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 520 - 565
Target Start/End: Original strand, 12133312 - 12133357
Alignment:
Q  520 agaagtctgcattgaaagtttgatatcaccttgttcttaatgttag 565  Q
    ||||||||||| | | ||||||||||||||||||||||||||||||    
T  12133312 agaagtctgcactaagagtttgatatcaccttgttcttaatgttag 12133357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 291 - 371
Target Start/End: Original strand, 989385 - 989465
Alignment:
Q  291 tttctagtaatgatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaattgttcactattcctttcatgc 371  Q
    ||||| || ||||||||||| ||||||| || || || |  |||| ||||||||||||||||||||||||| ||| |||||    
T  989385 tttctggtgatgatgtttgggtaatgaaagagtacggaaataaagagtcttggactaaattgttcactatttcttacatgc 989465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 531 - 570
Target Start/End: Complemental strand, 1897487 - 1897448
Alignment:
Q  531 ttgaaagtttgatatcaccttgttcttaatgttagaatgt 570  Q
    |||| |||||||||||||||||||||||||| ||||||||    
T  1897487 ttgagagtttgatatcaccttgttcttaatgctagaatgt 1897448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 531 - 570
Target Start/End: Complemental strand, 1906933 - 1906894
Alignment:
Q  531 ttgaaagtttgatatcaccttgttcttaatgttagaatgt 570  Q
    |||| |||||||||||||||||||||||||| ||||||||    
T  1906933 ttgagagtttgatatcaccttgttcttaatgctagaatgt 1906894  T

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Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 531 - 570
Target Start/End: Complemental strand, 1930985 - 1930946
Alignment:
Q  531 ttgaaagtttgatatcaccttgttcttaatgttagaatgt 570  Q
    |||| |||||||||||||||||||||||||| ||||||||    
T  1930985 ttgagagtttgatatcaccttgttcttaatgctagaatgt 1930946  T

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Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 200
Target Start/End: Original strand, 12132951 - 12132986
Alignment:
Q  165 gttttattgcttcttttgatttgggaaaagagtctt 200  Q
    ||||||||| ||||||||||||||||||||||||||    
T  12132951 gttttattgtttcttttgatttgggaaaagagtctt 12132986  T

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Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 531 - 570
Target Start/End: Original strand, 12218280 - 12218319
Alignment:
Q  531 ttgaaagtttgatatcaccttgttcttaatgttagaatgt 570  Q
    |||| |||||||||||||||||||||||||||||| ||||    
T  12218280 ttgagagtttgatatcaccttgttcttaatgttaggatgt 12218319  T

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Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 353
Target Start/End: Complemental strand, 37753396 - 37753345
Alignment:
Q  302 gatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaattgt 353  Q
    ||||||||||| ||| |||||||||| | ||||| |||||||||||||||||    
T  37753396 gatgtttggattatggaggaatatggaaagaaagagtcttggactaaattgt 37753345  T

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Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 614 - 656
Target Start/End: Complemental strand, 802926 - 802884
Alignment:
Q  614 ctatattttaatttatgtttatgatatttattttgtacttgtt 656  Q
    ||||||||||||||||||||||| ||||| |||| ||||||||    
T  802926 ctatattttaatttatgtttatgttatttcttttttacttgtt 802884  T

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Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 358
Target Start/End: Complemental strand, 803295 - 803213
Alignment:
Q  276 attgtttgtgctggatttctagtaatgatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaattgttcact 358  Q
    |||| ||||||  ||||||| || ||||||||||| | ||||| |||||||| |  |||| |||||||||||| |||||||||    
T  803295 attgcttgtgcatgatttctggtgatgatgtttgggttatgaaagaatatggaaataaagagtcttggactaagttgttcact 803213  T

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Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 720 - 754
Target Start/End: Original strand, 900375 - 900409
Alignment:
Q  720 gagaaattgtagttattttcatttatttgtttgtt 754  Q
    ||||||||||||||||||||| |||||||||||||    
T  900375 gagaaattgtagttattttcaattatttgtttgtt 900409  T

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Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 364
Target Start/End: Complemental strand, 2644413 - 2644351
Alignment:
Q  302 gatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaattgttcactattcct 364  Q
    ||||||||||| |||||||| ||||| |   ||| ||||||||||||||||| ||||||||||    
T  2644413 gatgtttggattatgaaggagtatggaaatcaagagtcttggactaaattgtacactattcct 2644351  T

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Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 364
Target Start/End: Complemental strand, 2659203 - 2659141
Alignment:
Q  302 gatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaattgttcactattcct 364  Q
    ||||||||||| |||||||| ||||| |   ||| ||||||||||||||||| ||||||||||    
T  2659203 gatgtttggattatgaaggagtatggaaatcaagagtcttggactaaattgtacactattcct 2659141  T

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Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 364
Target Start/End: Complemental strand, 7334290 - 7334228
Alignment:
Q  302 gatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaattgttcactattcct 364  Q
    ||||||||||| |||||||| || || |  |||| ||||||||||||||||| ||||||||||    
T  7334290 gatgtttggatcatgaaggactacggaaataaagagtcttggactaaattgtacactattcct 7334228  T

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Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 536 - 570
Target Start/End: Complemental strand, 7427398 - 7427364
Alignment:
Q  536 agtttgatatcaccttgttcttaatgttagaatgt 570  Q
    |||||||||||||||||||||||||||||| ||||    
T  7427398 agtttgatatcaccttgttcttaatgttaggatgt 7427364  T

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Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 521 - 562
Target Start/End: Complemental strand, 783631 - 783590
Alignment:
Q  521 gaagtctgcattgaaagtttgatatcaccttgttcttaatgt 562  Q
    ||||||| | |||| |||||||||||||||||||||||||||    
T  783631 gaagtctacgttgagagtttgatatcaccttgttcttaatgt 783590  T

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Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 520 - 561
Target Start/End: Complemental strand, 803018 - 802977
Alignment:
Q  520 agaagtctgcattgaaagtttgatatcaccttgttcttaatg 561  Q
    |||| |||||||||| || |||||||||||||||||||||||    
T  803018 agaaatctgcattgagagcttgatatcaccttgttcttaatg 802977  T

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Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 300 - 365
Target Start/End: Complemental strand, 2678452 - 2678387
Alignment:
Q  300 atgatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaattgttcactattcctt 365  Q
    ||||||||||| | |||||  ||||||| |  |||| ||| |||||||||||||||||||||||||    
T  2678452 atgatgtttgggttatgaaacaatatggaaaaaaagagtcatggactaaattgttcactattcctt 2678387  T

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Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 207
Target Start/End: Complemental strand, 2678583 - 2678542
Alignment:
Q  166 ttttattgcttcttttgatttgggaaaagagtcttataaaaa 207  Q
    |||||||| |||||||||||||| ||||||||||||| ||||    
T  2678583 ttttattgtttcttttgatttggcaaaagagtcttatcaaaa 2678542  T

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Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 302 - 351
Target Start/End: Original strand, 13498224 - 13498273
Alignment:
Q  302 gatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaatt 351  Q
    ||||||||||| |||||||||||||| |  |||| |||||||||||||||    
T  13498224 gatgtttggattatgaaggaatatggaaataaagagtcttggactaaatt 13498273  T

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Target: chr4 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 614 - 677
Target Start/End: Complemental strand, 22671874 - 22671811
Alignment:
Q  614 ctatattttaatttatgtttatgatatttattttgtacttgttctgattattagctacttcatg 677  Q
    |||||| |||||||||||||||||||||||||||||| ||||||| |||||| | |||||||||    
T  22671874 ctatatgttaatttatgtttatgatatttattttgtaattgttctcattattggttacttcatg 22671811  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 290 - 358
Target Start/End: Complemental strand, 20019835 - 20019767
Alignment:
Q  290 atttctagtaatgatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaattgttcact 358  Q
    |||||| |||||||||||||| | |||||||||||||| ||  ||| ||||||||||||||||||||||    
T  20019835 atttctggtaatgatgtttgggtcatgaaggaatatggaattcaagagtcttggactaaattgttcact 20019767  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 516 - 649
Target Start/End: Complemental strand, 20019600 - 20019473
Alignment:
Q  516 tcctagaagtctgcattgaaagtttgatatcaccttgttcttaatgttagaatgtcgtagtgatgctatatcgcttgaacatgagattcaactaaaaact 615  Q
    |||||||||| ||  |||| ||||||||||||||||||| |||||| ||| |||| ||      ||||| || ||| | ||||||||| ||||| || ||    
T  20019600 tcctagaagtatgtgttgagagtttgatatcaccttgtttttaatgctaggatgttgt------gctatgtcacttcagcatgagatttaactacaacct 20019507  T
Q  616 atattttaatttatgtttatgatatttattttgt 649  Q
    ||||||||||||||||| ||| | ||||||||||    
T  20019506 atattttaatttatgttaatgttttttattttgt 20019473  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 290 - 358
Target Start/End: Complemental strand, 20016249 - 20016180
Alignment:
Q  290 atttctagtaatgatgttt-ggataatgaaggaatatgggatgaaagcgtcttggactaaattgttcact 358  Q
    |||||| |||||||||||| |||| |||||||||||||| ||  ||| ||||||||||||||||||||||    
T  20016249 atttctggtaatgatgttttggatcatgaaggaatatggaattcaagagtcttggactaaattgttcact 20016180  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 375
Target Start/End: Complemental strand, 22672232 - 22672105
Alignment:
Q  248 cgtactttgcacttgagtgttttcgggaattgtttgtgctggatttctagtaatgatgtttggataatgaaggaatatgggatgaaagcgtcttggacta 347  Q
    |||| ||||| |||||||||| || || |||| |||  || | ||||| || | || |||||| |||||||||||||||| |  || |  ||||||||||    
T  22672232 cgtattttgctcttgagtgttctcagggattgcttgatcttgttttctggtgacgacgtttgggtaatgaaggaatatggaaataaggaatcttggacta 22672133  T
Q  348 aattgttcactattcctttcatgccatc 375  Q
    |||||||||||||| ||| |||||||||    
T  22672132 aattgttcactatttcttacatgccatc 22672105  T

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Target: chr2 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 520 - 608
Target Start/End: Original strand, 33038434 - 33038522
Alignment:
Q  520 agaagtctgcattgaaagtttgatatcaccttgttcttaatgttagaatgtcgtagtgatgctatatcgcttgaacatgagattcaact 608  Q
    |||||||| |||||||||| |||||||||||||||||||||||||| |||| |  |  ||| ||| || ||||||||||||||| ||||    
T  33038434 agaagtctacattgaaagtctgatatcaccttgttcttaatgttaggatgtagatgctatgatatgtcacttgaacatgagattaaact 33038522  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 718 - 755
Target Start/End: Original strand, 36577819 - 36577856
Alignment:
Q  718 tagagaaattgtagttattttcatttatttgtttgtta 755  Q
    ||||||||||||||||||||||||||||||||||||||    
T  36577819 tagagaaattgtagttattttcatttatttgtttgtta 36577856  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 520 - 562
Target Start/End: Original strand, 33026902 - 33026944
Alignment:
Q  520 agaagtctgcattgaaagtttgatatcaccttgttcttaatgt 562  Q
    |||||||| |||||||||| |||||||||||||||||||||||    
T  33026902 agaagtctacattgaaagtctgatatcaccttgttcttaatgt 33026944  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 520 - 565
Target Start/End: Complemental strand, 24417289 - 24417244
Alignment:
Q  520 agaagtctgcattgaaagtttgatatcaccttgttcttaatgttag 565  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||    
T  24417289 agaagtctacattgaaagtctgatatcaccttgttcttaatgttag 24417244  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 531 - 570
Target Start/End: Complemental strand, 9819645 - 9819606
Alignment:
Q  531 ttgaaagtttgatatcaccttgttcttaatgttagaatgt 570  Q
    |||| |||||||||||||||||||||||||||||| ||||    
T  9819645 ttgagagtttgatatcaccttgttcttaatgttagtatgt 9819606  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 227
Target Start/End: Complemental strand, 1078361 - 1078301
Alignment:
Q  167 tttattgcttcttttgatttgggaaaagagtcttataaaaaagttttgctacctgattatg 227  Q
    ||||||| ||||||||||||||||||||| |||||| |||| |||||||  ||||||||||    
T  1078361 tttattgtttcttttgatttgggaaaagaatcttatcaaaaggttttgcctcctgattatg 1078301  T

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Target: scaffold0044 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 522 - 570
Target Start/End: Original strand, 89387 - 89435
Alignment:
Q  522 aagtctgcattgaaagtttgatatcaccttgttcttaatgttagaatgt 570  Q
    |||||| |||||| |||||||||||||||||||||||| ||||| ||||    
T  89387 aagtctacattgagagtttgatatcaccttgttcttaacgttaggatgt 89435  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 301 - 370
Target Start/End: Complemental strand, 51381507 - 51381438
Alignment:
Q  301 tgatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaattgttcactattcctttcatg 370  Q
    |||| ||||||| ||||| |||||||| |   ||| |||||||||||||||||||| |||||||| ||||    
T  51381507 tgatatttggattatgaaagaatatggaaatgaagagtcttggactaaattgttcagtattccttacatg 51381438  T

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