View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11190_low_11 (Length: 377)
Name: NF11190_low_11
Description: NF11190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11190_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 16 - 360
Target Start/End: Complemental strand, 11156115 - 11155769
Alignment:
| Q |
16 |
gagacattgaaagcctttaaaatnnnnnnntctgacatggaagggctagtggttgacagagaagtacagttgccggacaaagatacatttgcaataacga |
115 |
Q |
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| T |
11156115 |
gagacattgaaagcctttaaaataaaaaaatatgacatggaacggccagtggttgacagagaagtacagttgccagacaaagatacatttgcaataacga |
11156016 |
T |
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| Q |
116 |
aggtcactgccgaattcttggaaatctgtttgttattgaatctttggttatttctgcaaaaccaaattacattgacaatgttgacaatcgttgatcaaat |
215 |
Q |
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| T |
11156015 |
aggtcactgtcgaattcttggaaatctgtttgttattgaatcttttgttatttctgcaaaaccaaattacattgacaatgttgacaattgctgatcaaat |
11155916 |
T |
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| Q |
216 |
aaccactttgcattgaggactgaactgttgaaccaaactgaact--gttcagttcgaggattctatcacaagaacatgcaatgcaatcaagtatgcaaga |
313 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
11155915 |
aaccactttgcattgaggactgaactgttgaaccgaactgaactcagttcggttcgaggattctatcacaagaacacgcaatgcaatcaagtatgcaaga |
11155816 |
T |
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| Q |
314 |
ggatcagcttcaagattggcaaggttcaagggatgtgttgacaatag |
360 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11155815 |
ggatcagcttcaagattggcaaggttcaagggatgtgttgacaatag |
11155769 |
T |
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