View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11190_low_13 (Length: 332)
Name: NF11190_low_13
Description: NF11190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11190_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 19 - 323
Target Start/End: Original strand, 32962130 - 32962434
Alignment:
| Q |
19 |
ctgggttttttaccagaccagttacttcgatggaccaatcatcccaacatgctttgggaacatgtccgtgattacgaacatagtggagtggaacgggagt |
118 |
Q |
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| T |
32962130 |
ctgggttttttaccagaccagttacttcgatggaccaatcatcccaacatgctttgggaacatgtccgtgattacgaacatagtggagtggaacgggagt |
32962229 |
T |
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| Q |
119 |
tatgaagccgtggtgcatgaggctttggagtggtggctctgagttgaaagggtgtttacccgtgagacggatcaaggaagggtttctttgaatccagtga |
218 |
Q |
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| T |
32962230 |
tatgaagccgtggtgcatgaggctttggagtggtggctcggagttgaatgggtgtttacccgtgagacggatcaaggaagggtttctttgaatccagtga |
32962329 |
T |
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| Q |
219 |
tctaaggtacccacatcacgagggtctaacactgaggattctacttcagatattccctttaggattatgtttttcaccatgctcaagtacttttcatctt |
318 |
Q |
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| T |
32962330 |
tctaaggtacccacatcacgagggtctaacactgaggattctacttcagatattccctttaggattatgtttttcaccatgctcaagtacttttcatcct |
32962429 |
T |
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| Q |
319 |
cttct |
323 |
Q |
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||||| |
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| T |
32962430 |
cttct |
32962434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 109
Target Start/End: Original strand, 32989795 - 32989883
Alignment:
| Q |
21 |
gggttttttaccagaccagttacttcgatggaccaatcatcccaacatgctttgggaacatgtccgtgattacgaacatagtggagtgg |
109 |
Q |
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| T |
32989795 |
gggtttttgaccagacctgatacttcgatggtccaactatcccattgtgcttttgggacaggtccgtggttacggacatagtggagtgg |
32989883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 84 - 189
Target Start/End: Original strand, 24866015 - 24866120
Alignment:
| Q |
84 |
ccgtgattacgaacatagtggagtggaacgggagttatgaagccgtggtgcatgaggctttggagtggtggctctgagttgaaagggtgtttacccgtga |
183 |
Q |
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||||| ||||| || ||||| | |||||| ||||| ||||| |||||||||||||| | | |||||||||| ||||| |||||||||||||| || |||| |
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| T |
24866015 |
ccgtggttacgtacgtagtgaattggaactggagtgatgaaaccgtggtgcatgagacgtgggagtggtggttctgaattgaaagggtgtttccctgtga |
24866114 |
T |
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| Q |
184 |
gacgga |
189 |
Q |
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|||||| |
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| T |
24866115 |
gacgga |
24866120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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