View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11190_low_15 (Length: 259)
Name: NF11190_low_15
Description: NF11190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11190_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 43975812 - 43976047
Alignment:
| Q |
1 |
agtgtgccatagttgtgtctaacacatgcatgtgtaaaggagaggtaaaggtgatagttacctttctttccattttatttaatttaaagaaaatggatat |
100 |
Q |
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| T |
43975812 |
agtgtgccatagttgtgtctaacacatgcatgtgtaaaggagaggtaaaggtgatagttacctttctttccattttatttaa-----agaaaatggatat |
43975906 |
T |
|
| Q |
101 |
gcatatattgacattnnnnnnnntcaatttgactaggattaacattataattaagtttttcttgattcgacgaatattgattcattgaaaaatagtttag |
200 |
Q |
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| T |
43975907 |
gcatatattgacattaaaaaaa-tcaatttgactaggattaacattataattaagtttttcttgattcgacgaattttgattcattgaaaaatagtttag |
43976005 |
T |
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| Q |
201 |
tccaagaagttacggtggtaaaatgacaaattttagatctgt |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
43976006 |
tccaagaagttacggtggtaaaatgacaaattttagatctgt |
43976047 |
T |
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