View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11190_low_2 (Length: 953)
Name: NF11190_low_2
Description: NF11190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11190_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-176; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-176
Query Start/End: Original strand, 566 - 942
Target Start/End: Original strand, 53791456 - 53791835
Alignment:
| Q |
566 |
ttttcttttctcataaaaagttttcaatcaataatttaaaacctcgctgccctggcttgttattttcatcttggcaataccatgaacaagacatggaaag |
665 |
Q |
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| T |
53791456 |
ttttcttttctcataaaa-gttttcaatcaataatttaaaaccacgctgccctggcttgttattttcatcttggcaataccatgaacaagacatggaaag |
53791554 |
T |
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| Q |
666 |
tctttttccaagaaataatgtttgtgtcttccaaaaaagt-agttcaataacgcaaaggcaggctaaata-----caaggaagaaaagctacttagtttt |
759 |
Q |
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| T |
53791555 |
tctttttccaagaaataatgtttgtgtcttccaaaaaagttagttcaataacgcaaagccaggctaaatacaatacaaggaagaaaagctacttagtttt |
53791654 |
T |
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| Q |
760 |
gtatatagtatagagtagatataatgttagttttgtatgcatacgaaacgaacaaatgagttatttgactttatttatttaactccaatgttgtacacgt |
859 |
Q |
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| T |
53791655 |
gtatatagtatagagtagatataatgttagttttgtatgcatacaaaacgaacaaatgagttatttgactttatttatttaactccaatgttgtacacgt |
53791754 |
T |
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| Q |
860 |
tgcacatgtttgtctcacgggtgc-ttagtttttcagtagtaagctgaactgtgaaaccaaaccaatcatcaaccatgtctctg |
942 |
Q |
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| T |
53791755 |
tgcacatgtttgtctcacgggtgctttagtttttc---agtaagctgaactgtgaaaccaaaccaatcatcaaccatgtctctg |
53791835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 432 - 509
Target Start/End: Original strand, 53791075 - 53791152
Alignment:
| Q |
432 |
ttcacattttgggaccatgttggtatgccacaataattctaattttaattctacgtgtattaggtaagttaatactat |
509 |
Q |
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| T |
53791075 |
ttcacattttgggaccatgttggtatgccacaataattctaattttaattctacgtgtattacgtaagttaatactat |
53791152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 504 - 568
Target Start/End: Original strand, 53791288 - 53791352
Alignment:
| Q |
504 |
tactatatctctaataaatatcttacaacataaaaataatagagtgaagattcattatagtcttt |
568 |
Q |
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| T |
53791288 |
tactatatctctaataaatatcttacaacataaaaataatagagtaaagattccttatagtcttt |
53791352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 53791034 - 53791073
Alignment:
| Q |
18 |
gctacattgtgaagagtactgattagcatgattcatatgt |
57 |
Q |
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| T |
53791034 |
gctacattgtgaagagtactgattagcatgattcatatgt |
53791073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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