View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11190_low_20 (Length: 221)
Name: NF11190_low_20
Description: NF11190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11190_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 20 - 209
Target Start/End: Complemental strand, 36372801 - 36372612
Alignment:
| Q |
20 |
tttttattgtactcaaagcttgatagcacagatatgtcaattccaggtcttatgaaactggagcaatcagccggagtagcttgtcttgatcgtatccgaa |
119 |
Q |
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| T |
36372801 |
tttttattgtattcaaagcttgatagcacagatatgtcaattccaggtcttacgaaactggagcaatcagccggagtagcttctcttgatcgtaaccgaa |
36372702 |
T |
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| Q |
120 |
tgtccgataacaaatgactatgaatattttgtgcatggatgaaatctacggtagttttcccagactcaatttttatgagttccacaggtt |
209 |
Q |
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| T |
36372701 |
tgtccgataacaaatgactatgaatattttgcgcatggatgaaatttacgatagttttcccagactcaatttttatgagttccacaggtt |
36372612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 108; Significance: 2e-54; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 74 - 209
Target Start/End: Original strand, 8731980 - 8732115
Alignment:
| Q |
74 |
aaactggagcaatcagccggagtagcttgtcttgatcgtatccgaatgtccgataacaaatgactatgaatattttgtgcatggatgaaatctacggtag |
173 |
Q |
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| T |
8731980 |
aaactggagcaatcagccgtagtagcttctcttgatcgtatccgaatgtccgataacaaacgactatcaatattttgtgcatggatgaaatttacgctag |
8732079 |
T |
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| Q |
174 |
ttttcccagactcaatttttatgagttccacaggtt |
209 |
Q |
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| T |
8732080 |
ttttcccatactcaatttttatgagttccacaggtt |
8732115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 74 - 209
Target Start/End: Original strand, 9083867 - 9084002
Alignment:
| Q |
74 |
aaactggagcaatcagccggagtagcttgtcttgatcgtatccgaatgtccgataacaaatgactatgaatattttgtgcatggatgaaatctacggtag |
173 |
Q |
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| T |
9083867 |
aaactggagcaatcagccgtagtagcttctcttgatcgtatccgaatgtccgataacaaacgactatcaatattttgtgcatggatgaaatttacgctag |
9083966 |
T |
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| Q |
174 |
ttttcccagactcaatttttatgagttccacaggtt |
209 |
Q |
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| T |
9083967 |
ttttcccatactcaatttttatgagttccacaggtt |
9084002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 133
Target Start/End: Original strand, 32253313 - 32253404
Alignment:
| Q |
42 |
atagcacagatatgtcaattccaggtcttatgaaactggagcaatcagccggagtagcttgtcttgatcgtatccgaatgtccgataacaaa |
133 |
Q |
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| T |
32253313 |
atagcatagatatatcaattccaggtcgtaaaaagctggagcaatcagatgaagtagctttccttgatcttatccgaatatcggatgacaaa |
32253404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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