View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11190_low_3 (Length: 735)
Name: NF11190_low_3
Description: NF11190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11190_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 8e-94; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 8e-94
Query Start/End: Original strand, 460 - 662
Target Start/End: Original strand, 25721887 - 25722084
Alignment:
| Q |
460 |
cccataaatacttgtttaatatgtaaatgttgtattttgttttcaaagtttatcactatgttattttaattttaatttgttacattgaaacatatatcta |
559 |
Q |
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| T |
25721887 |
cccataaatacttgtttaatatgtaaatgttgtattttgttttcaaagtttatcactatgttt-----attttaatttgttacattgcaacatatatcta |
25721981 |
T |
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| Q |
560 |
cgagtacatctgaaatcaatgtaaaatccaaaaggtagatgctataaacaggcaaggcaagcaggtacaggttggattttgattcatgcggatgagtgga |
659 |
Q |
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| T |
25721982 |
cgagtacatctgaaatcaatgtaaaatccaaaaggtagatgctataaacaggcaaggcaagcaggtacaggttggattttgattcatgcggatgagtgga |
25722081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 248 - 450
Target Start/End: Original strand, 25721649 - 25721854
Alignment:
| Q |
248 |
atgtttatttacttaaatatgccttacacaatgcaacaaaacaaataataaaaaagtcatactattgtactatcactttgttgtttattaactagtattg |
347 |
Q |
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| T |
25721649 |
atgtttatttacttaaatatgccttacacaatgcaaaaaaacaaataa-aaaaaagtcatactattgtactatcactttgttgtttattaaatagtattg |
25721747 |
T |
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| Q |
348 |
tgctattattataactttatttataatgaaaatgctaacatgcgcccctgaaacattagttaagaaaacaa----tgtaaaaatatctttgaattttgtt |
443 |
Q |
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| T |
25721748 |
tgctattattataactttatttataatgaaaatgctaatatgcgcctctgaaacattagttaagaaaataaatattgtaaaaatatctttgaattttgtt |
25721847 |
T |
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| Q |
444 |
taatgaa |
450 |
Q |
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| T |
25721848 |
taatgaa |
25721854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 106 - 234
Target Start/End: Original strand, 25721486 - 25721617
Alignment:
| Q |
106 |
ttaggtacttactaagggtaccaagtgtatattcaaagtgatgttggaggcatagaaagttcctaacaaattaatagatatttttaatctatac---att |
202 |
Q |
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| T |
25721486 |
ttaggtacttactaagggtaccaagtgtatattcaaagtgatgttggaggcatagaaagttcctaacaaattaatagatatttttaatctatacattatt |
25721585 |
T |
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| Q |
203 |
aatgggttagtgacatagcatgtacacttgag |
234 |
Q |
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| T |
25721586 |
aatgggttagtgacatagcatgtacacttgag |
25721617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 25721317 - 25721406
Alignment:
| Q |
16 |
caagatcaagattttgtgaaacattaaaattaaaatggatattcatcaagaatgcagaccaaaatggaaaacaacataataagagcaacc |
105 |
Q |
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| T |
25721317 |
caagatcaagattttgtgaaacattaaaattaaaatggatattcatcaagaatgcagaccaaaatggaaaacaacataaaaagagcaacc |
25721406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 663 - 723
Target Start/End: Original strand, 25722117 - 25722177
Alignment:
| Q |
663 |
cattcctccccacgttgttaccctctctcaaagttgccagcattttctaagcttcatctca |
723 |
Q |
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| T |
25722117 |
cattcctccccacgttgttaccctctctcaaagttgccagcattttctaagcttcatctca |
25722177 |
T |
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