View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11190_low_5 (Length: 605)
Name: NF11190_low_5
Description: NF11190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11190_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 511; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 1 - 585
Target Start/End: Original strand, 30077357 - 30077937
Alignment:
| Q |
1 |
gggtagtaagaataatctcactcccatgaactacactaatgtcgctatagtggtgttagacaaagtttttgtacaacaa-taaacgaacaatttcataaa |
99 |
Q |
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| T |
30077357 |
gggtagtaagaataatctcactcccatgaactacactaatgtcgctatagtggtgttagacaaaaaatttgtacaacaaataaacgaacaatttcataaa |
30077456 |
T |
|
| Q |
100 |
gtagaaaacaacatttacttgaattgaattgatcttatatatgaaatactaatcaacacatccctatgaaaaattacatataattaaacacctaacacta |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30077457 |
gtagaaaacaacatttacttgaattgaattgatcttatatatgaaatactaatcaacacatccctatgaaaaattacatataattaaacacctaacacta |
30077556 |
T |
|
| Q |
200 |
acaannnnnnnnccttcccatttcccttgcatatataaaaccaaatagaaatatcattcttccccatattaaacctaatcattaaaatattaccctagtt |
299 |
Q |
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| T |
30077557 |
acaattttttt-ccttcccatt---cttgcatatataaaaccaaatagaaatatcattcttccccatattaaacctaatcattaaaatattaccctagtt |
30077652 |
T |
|
| Q |
300 |
tgatctctaactaaaataattctcaacaagactatatttatctcgcaatcaaactccaaattatactaatcgaggaaaaagaaaattcacctcctccgtc |
399 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
30077653 |
tgatctctaactaaaataattctcaaca-gactatatttatctcgcaatcaaactccaaattatcctaatcgaggaaaaagaaaattcacctcctccgtc |
30077751 |
T |
|
| Q |
400 |
tccgatcagcagcatactgcgaaagcggaacaacctcttgaagcggagtagaaagcggcgtcggaagcggggagtttcgacaaacgggacaagagccatt |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30077752 |
tccgatcagcagcatactgcgaaagcggaacaacctcttgaagcggagtagaaagcggcgtcggaagcggggagtttcgacaaacgggacaagagccatt |
30077851 |
T |
|
| Q |
500 |
aagcttcaaccatgaatcaagacaacatagatgaaagtaatgacgacattcaggcatcatcctcagcatctccgaatccttgtact |
585 |
Q |
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| T |
30077852 |
aagcttcaaccatgaatcaagacaacatagatgaaagtaatgacgacattcaggcatcatcctcagcatctccgaatccttgtact |
30077937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 580
Target Start/End: Original strand, 30084255 - 30084356
Alignment:
| Q |
479 |
acaaacgggacaagagccattaagcttcaaccatgaatcaagacaacatagatgaaagtaatgacgacattcaggcatcatcctcagcatctccgaatcc |
578 |
Q |
| |
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|||||| ||||| || ||||||| ||||||||||| ||||| |||| | ||||||| || || |||||| ||||||||||||| |||||||| ||| |
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| T |
30084255 |
acaaactggacacgaaccattaaccttcaaccatgtatcaacacaatctcgatgaaaatagtggtgacattgcggcatcatcctcaaaatctccgattcc |
30084354 |
T |
|
| Q |
579 |
tt |
580 |
Q |
| |
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|| |
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|
| T |
30084355 |
tt |
30084356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 420 - 585
Target Start/End: Original strand, 10810163 - 10810328
Alignment:
| Q |
420 |
gaaagcggaacaacctcttgaagcggagtagaaagcggcgtcggaagcggggagtttcgacaaacgggacaagagccattaagcttcaaccatgaatcaa |
519 |
Q |
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||||| |||||||| ||||| | ||||||||| | |||||| || | || ||||| ||||||||||||||||| || ||||| |||||||| ||||||| |
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| T |
10810163 |
gaaagtggaacaacttcttgtaacggagtagataacggcgttggcataggtgagttccgacaaacgggacaagaaccgttaagtttcaaccacgaatcaa |
10810262 |
T |
|
| Q |
520 |
gacaacatagatgaaagtaatgacgacattcaggcatcatcctcagcatctccgaatccttgtact |
585 |
Q |
| |
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|||||||||| ||||| || || | |||||| ||||||||||| | |||||||||||||||||||| |
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| T |
10810263 |
gacaacataggtgaaaatagtgtctacattccggcatcatccttaacatctccgaatccttgtact |
10810328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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