View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11190_low_6 (Length: 448)
Name: NF11190_low_6
Description: NF11190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11190_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 24 - 417
Target Start/End: Complemental strand, 44942289 - 44941913
Alignment:
| Q |
24 |
acaagtgtgcatgtgtagttgtcaaaagacaaagaaagtcgctacgtgtgtg--ataatgaggtggaactaatttgaatttcatcacaacagtttttgga |
121 |
Q |
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| T |
44942289 |
acaagtgtgcatgtgtagttgtcaaaagacaaagaaagtcgctaagtgtgtgtgataatgaggtggaactaatttgaatttcatcacaacagtttttgga |
44942190 |
T |
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| Q |
122 |
gtgttgtgttgtggggtagcatgcatagcactacactttcagaggtaacaataaggttactgagtgagtggtgaaaggtaaagtttgatttgaagaagca |
221 |
Q |
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| T |
44942189 |
gtgttgtgttgtggggtagcat----agcactacactttcagaggtaacaataaggttactgagtgagtggtgaaaggtaaagtttgatttgaagaagca |
44942094 |
T |
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| Q |
222 |
aagcaaagcaaagcaaagaggaagaagatggaaatagaggatttggattatgttttggttcctgttggtatattgttgttgttaatttatcatgtttggc |
321 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
44942093 |
aag---------------aggaagaagatggaaatagaggatttggattatgttttggttcctgttggtatattggtgttgttaatttatcatgtttggc |
44942009 |
T |
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| Q |
322 |
ttctctacactataatccgacacccttctagcactgttattggcttgaatgctcagtctcgttaccagtggactcttttcatgatgtctgtcagta |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44942008 |
ttctctacactataatccgacacccttctagcactgttattggcttgaatgctcagtctcgttaccagtggactcttttcatgatgtctgtcagta |
44941913 |
T |
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