View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11190_low_7 (Length: 418)

Name: NF11190_low_7
Description: NF11190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11190_low_7
NF11190_low_7
[»] chr5 (10 HSPs)
chr5 (19-403)||(38986873-38987258)
chr5 (23-254)||(39725745-39725976)
chr5 (39-268)||(39879125-39879360)
chr5 (39-268)||(40411830-40412065)
chr5 (124-268)||(1164332-1164476)
chr5 (63-235)||(1849323-1849495)
chr5 (130-234)||(3298832-3298936)
chr5 (133-234)||(3391725-3391826)
chr5 (148-211)||(39168281-39168340)
chr5 (304-357)||(39874044-39874097)
[»] chr4 (2 HSPs)
chr4 (141-253)||(25912944-25913058)
chr4 (19-100)||(25912817-25912898)
[»] chr3 (1 HSPs)
chr3 (214-258)||(55345733-55345777)


Alignment Details
Target: chr5 (Bit Score: 358; Significance: 0; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 19 - 403
Target Start/End: Complemental strand, 38987258 - 38986873
Alignment:
Q  19 tatgtcccctataagtgtcgcaaaataccaagcacaagatgttatattgaaacagaaagaaaaaccttgatcaacgtcgtatatgattttctcaacatca 118  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38987258 tatgtcccctataagtgtcgcaaaataccaagcacaagatattatattgaaacagaaagaaaaaccttgatcaacgtcgtatatgattttctcaacatca 38987159  T
Q  119 tcaaggataccaagattggtcataacgctgatctgctccaaatgaaagacagtacgaagttgagaaacatgttgttgacgaactttcacaacagaacgcc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38987158 tcaaggataccaagattggtcataacgctgatctgctccaaatgaaagacagtacgaagttgagaaacatgttgttgacgaactttcacaacagaacgcc 38987059  T
Q  219 acccttgctccatcttctccactttttgacctaatttctttgcaattgcagcaattgccg-aactcactttttattctatctatttatttatttatggtt 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  38987058 acccttgctccatcttctccactttttgacctaatttctttgcaattgcagcaattgccgaaactcactttttattctatctatttatttatttatggtt 38986959  T
Q  318 tagggccaaaattttcggttctaattgcgggtttggcccatcatactctttatttattttttgagatttacttttccactcctatg 403  Q
    ||||||||||||| || |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  38986958 tagggccaaaattctcagttctaatcgcgggtttggcccatcttactctttatttattttttgagatttacttttccactcctatg 38986873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 23 - 254
Target Start/End: Complemental strand, 39725976 - 39725745
Alignment:
Q  23 tcccctataagtgtcgcaaaataccaagcacaagatgttatattgaaacagaaagaaaaaccttgatcaacgtcgtatatgattttctcaacatcatcaa 122  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||    
T  39725976 tcccctataagtctcgcaaaatgccaagcacaagatgttatattgaaacagaaagaaaaaccttgatcaacgtcgtatatgattctctcaacacgatcaa 39725877  T
Q  123 ggataccaagattggtcataacgctgatctgctccaaatgaaagacagtacgaagttgagaaacatgttgttgacgaactttcacaacagaacgccaccc 222  Q
     |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39725876 cgatagcaagattggtcataacgctgatctgctccaaatgaaagacagtacgaagttgagaaacatgttgttgacgaactttcacaacagaacgccaccc 39725777  T
Q  223 ttgctccatcttctccactttttgacctaatt 254  Q
    ||||||||||||||||||||||||||||||||    
T  39725776 ttgctccatcttctccactttttgacctaatt 39725745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 39 - 268
Target Start/End: Complemental strand, 39879360 - 39879125
Alignment:
Q  39 caaaataccaagcacaagatgttatattgaaacagaaagaaaaaccttgatcaacgtcgtatatgattttctcaacatcatcaaggataccaagattggt 138  Q
    |||||| ||||||| ||||||||| |  |||||||||||||||||||| ||||| ||||||| ||||| ||| | | | |  || | |||||| |||| |    
T  39879360 caaaatcccaagcataagatgttaaacggaaacagaaagaaaaaccttcatcaatgtcgtatttgattctcttagctttacgaacggtaccaaaattgtt 39879261  T
Q  139 cataacgctgatctgctccaaatgaaagacagtacgaagttgagaaacatgttgttgacgaactttc---acaacagaacg---ccacccttgctccatc 232  Q
    || |||||||||||||||||||||||||| |||||| || ||| ||||||||||||||||||| |||   |||||||||||   |||||||| |||||||    
T  39879260 caaaacgctgatctgctccaaatgaaagaaagtacgcagctgacaaacatgttgttgacgaacattcacaacaacagaacgccaccacccttcctccatc 39879161  T
Q  233 ttctccactttttgacctaatttctttgcaattgca 268  Q
    ||||||||| ||||||||||||||||||||||||||    
T  39879160 ttctccactctttgacctaatttctttgcaattgca 39879125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 39 - 268
Target Start/End: Complemental strand, 40412065 - 40411830
Alignment:
Q  39 caaaataccaagcacaagatgttatattgaaacagaaagaaaaaccttgatcaacgtcgtatatgattttctcaacatcatcaaggataccaagattggt 138  Q
    |||||| ||||||| ||||||||| |  |||||||||||||||||||| ||||| ||||||| ||||| ||| | | | |  || | |||||| |||| |    
T  40412065 caaaatcccaagcataagatgttaaacggaaacagaaagaaaaaccttcatcaatgtcgtatttgattatcttagctttacgaacggtaccaaaattgtt 40411966  T
Q  139 cataacgctgatctgctccaaatgaaagacagtacgaagttgagaaacatgttgttgacgaactttc---acaacagaacg---ccacccttgctccatc 232  Q
    || |||||||||||||||||||||||||| |||||| || ||| ||||||||||||||||||| |||   |||||||||||   |||||||| |||||||    
T  40411965 caaaacgctgatctgctccaaatgaaagaaagtacgcagctgacaaacatgttgttgacgaacattcacaacaacagaacgccaccacccttcctccatc 40411866  T
Q  233 ttctccactttttgacctaatttctttgcaattgca 268  Q
    ||||||||| ||||||||||||||||||||||||||    
T  40411865 ttctccactctttgacctaatttctttgcaattgca 40411830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 124 - 268
Target Start/End: Original strand, 1164332 - 1164476
Alignment:
Q  124 gataccaagattggtcataacgctgatctgctccaaatgaaagacagtacgaagttgagaaacatgttgttgacgaactttcacaacagaacgccaccct 223  Q
    ||||||||||| | ||  |||||||| ||||||||||||||| | |||||| |||| ||||||||||||||||||||| |||||||||| |||||| |||    
T  1164332 gataccaagatggttccaaacgctgacctgctccaaatgaaacaaagtacgcagttcagaaacatgttgttgacgaacattcacaacagcacgccatcct 1164431  T
Q  224 tgctccatcttctccactttttgacctaatttctttgcaattgca 268  Q
    | ||||||||||  |||||| ||||||||||| ||| ||||||||    
T  1164432 tcctccatcttcgacactttctgacctaatttttttccaattgca 1164476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 63 - 235
Target Start/End: Complemental strand, 1849495 - 1849323
Alignment:
Q  63 tattgaaacagaaagaaaaaccttgatcaacgtcgtatatgattttctcaacatcatcaaggataccaagattggtcataacgctgatctgctccaaatg 162  Q
    |||||||||||||||| ||||||| ||| | || |||| ||||| ||  ||  |  ||||||||||| |||| | ||  |||||||| ||||||||||||    
T  1849495 tattgaaacagaaagacaaaccttcatcgatgttgtatttgattctccgaatcttttcaaggataccgagatggttcgaaacgctgacctgctccaaatg 1849396  T
Q  163 aaagacagtacgaagttgagaaacatgttgttgacgaactttcacaacagaacgccacccttgctccatcttc 235  Q
    ||| | |||||| |||| ||||||||||||||||||||| |||||||||| ||   |||||| ||||||||||    
T  1849395 aaacaaagtacgcagttcagaaacatgttgttgacgaacattcacaacagcacaaaacccttcctccatcttc 1849323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 130 - 234
Target Start/End: Complemental strand, 3298936 - 3298832
Alignment:
Q  130 aagattggtcataacgctgatctgctccaaatgaaagacagtacgaagttgagaaacatgttgttgacgaactttcacaacagaacgccacccttgctcc 229  Q
    ||||||||||  |||||||||||||||||||||||| | |||||| |||||| ||||||||||||||||||| |||| ||||  |  |||||||| ||||    
T  3298936 aagattggtccaaacgctgatctgctccaaatgaaacaaagtacgtagttgacaaacatgttgttgacgaacattcaaaacaccaacccacccttcctcc 3298837  T
Q  230 atctt 234  Q
    |||||    
T  3298836 atctt 3298832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 133 - 234
Target Start/End: Complemental strand, 3391826 - 3391725
Alignment:
Q  133 attggtcataacgctgatctgctccaaatgaaagacagtacgaagttgagaaacatgttgttgacgaactttcacaacagaacgccacccttgctccatc 232  Q
    |||||||  |||||||||||||||||||||||| | |||||| |||||| ||||||||||||||||||| |||| ||||  |  |||||||| |||||||    
T  3391826 attggtccaaacgctgatctgctccaaatgaaacaaagtacgtagttgacaaacatgttgttgacgaacattcaaaacaccaacccacccttcctccatc 3391727  T
Q  233 tt 234  Q
    ||    
T  3391726 tt 3391725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 148 - 211
Target Start/End: Complemental strand, 39168340 - 39168281
Alignment:
Q  148 gatctgctccaaatgaaagacagtacgaagttgagaaacatgttgttgacgaactttcacaaca 211  Q
    |||||||||||||||||||| ||||    | ||||||||||||||||||||||| |||||||||    
T  39168340 gatctgctccaaatgaaagaaagta----gatgagaaacatgttgttgacgaaccttcacaaca 39168281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 304 - 357
Target Start/End: Complemental strand, 39874097 - 39874044
Alignment:
Q  304 atttatttatggtttagggccaaaattttcggttctaattgcgggtttggccca 357  Q
    |||||||| | ||||||||||| ||||||| |||||||| ||||||||||||||    
T  39874097 atttatttgttgtttagggccagaattttcagttctaatcgcgggtttggccca 39874044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 141 - 253
Target Start/End: Original strand, 25912944 - 25913058
Alignment:
Q  141 taacgctgatctgctccaaatgaaagacagtacgaagttgagaaacatgttgttgac--gaactttcacaacagaacgccacccttgctccatcttctcc 238  Q
    ||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||  |||| ||||||||||| |||||||||| ||||||||||| |    
T  25912944 taacgctgatctgctccaaatgaaagaaagtacgcagttgacaaacatgttgttgacgagaacattcacaacagagcgccacccttcctccatcttcttc 25913043  T
Q  239 actttttgacctaat 253  Q
    | |||||||||||||    
T  25913044 attttttgacctaat 25913058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 25912817 - 25912898
Alignment:
Q  19 tatgtcccctataagtgtcgcaaaataccaagcacaagatgttatattgaaacagaaagaaaaaccttgatcaacgtcgtat 100  Q
    |||||||||||||||| || |||||| ||| ||| |||||||| ||  ||||||||| |||||||||| ||||| |||||||    
T  25912817 tatgtcccctataagtttcacaaaatgccatgcaaaagatgttctacggaaacagaaggaaaaaccttcatcaatgtcgtat 25912898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 55345733 - 55345777
Alignment:
Q  214 acgccacccttgctccatcttctccactttttgacctaatttctt 258  Q
    ||||||||||| |||||| ||||||||| ||||||||||||||||    
T  55345733 acgccacccttcctccatattctccactctttgacctaatttctt 55345777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University