View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11190_low_8 (Length: 403)
Name: NF11190_low_8
Description: NF11190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11190_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 18 - 392
Target Start/End: Original strand, 14170763 - 14171140
Alignment:
| Q |
18 |
aaagcaacgaggtcgaggatg---atcaagtcacaatggtcagtcttaaaacacggagctaacatgtttggctccatatatgaatcttgcctcaccatta |
114 |
Q |
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| T |
14170763 |
aaagcaacgaggtcgaggatgatgatcaagtcacaatggtcactcttaaaacacggagctaacatgtttggctccatatatgaatcttgcctcaccatta |
14170862 |
T |
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| Q |
115 |
ctgttcctttctcacattctttcacatctctttgttcattttactacttataatcttcaaaattcacattttacggggacaaagaaaattgcttctttta |
214 |
Q |
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| T |
14170863 |
ctgttcctttctcacattctttcacatctctttgttcattttactactaataatcttcaaaattcacattttaaggggacaaagaaaattgcttctttta |
14170962 |
T |
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| Q |
215 |
cagtacaaaatcattgattccctcgttcaaattgattcgttcctatgtcacattgtaggattttccaccacattctcaaacgctgtaaagcttctaagaa |
314 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14170963 |
cattacaaaatcattgattccctcgttcaaattgattcgttcctatgtcacattgtaggattttccaccacattctcaaacgctgtaaagcttctaagaa |
14171062 |
T |
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| Q |
315 |
ttccaaaaccgttgctaaaactcacgcaaggatcattatacttggttatgccacatacccatctcttgtagcatctct |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14171063 |
ttccaaaaccgttgctaaaactcacgcaaggatcattatacttggttatgccacatacccatctcttgtagcatctct |
14171140 |
T |
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