View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11190_low_9 (Length: 394)

Name: NF11190_low_9
Description: NF11190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11190_low_9
NF11190_low_9
[»] chr3 (2 HSPs)
chr3 (1-375)||(25601657-25602031)
chr3 (6-363)||(25596864-25597230)
[»] chr4 (18 HSPs)
chr4 (38-349)||(36643440-36643751)
chr4 (38-362)||(36636745-36637069)
chr4 (216-362)||(55967007-55967153)
chr4 (219-331)||(36613342-36613454)
chr4 (219-363)||(38863134-38863278)
chr4 (237-331)||(35974003-35974097)
chr4 (202-286)||(18364242-18364326)
chr4 (239-351)||(35968285-35968397)
chr4 (202-286)||(36598599-36598683)
chr4 (216-363)||(18083021-18083168)
chr4 (48-151)||(36613165-36613268)
chr4 (216-363)||(36617513-36617660)
chr4 (219-289)||(3978136-3978206)
chr4 (237-363)||(18359158-18359284)
chr4 (237-363)||(36603644-36603770)
chr4 (93-178)||(36668463-36668548)
chr4 (70-178)||(35968458-35968566)
chr4 (38-105)||(36909764-36909831)
[»] chr5 (4 HSPs)
chr5 (48-330)||(19674990-19675272)
chr5 (48-330)||(19658151-19658433)
chr5 (257-343)||(17667110-17667196)
chr5 (244-301)||(25064275-25064332)
[»] chr1 (2 HSPs)
chr1 (86-360)||(42602730-42603004)
chr1 (229-363)||(28928442-28928576)
[»] chr6 (6 HSPs)
chr6 (237-362)||(33844280-33844405)
chr6 (237-362)||(33840288-33840413)
chr6 (257-363)||(7140746-7140852)
chr6 (257-363)||(8680360-8680466)
chr6 (140-178)||(33840185-33840223)
chr6 (116-178)||(33844153-33844215)
[»] chr7 (4 HSPs)
chr7 (237-301)||(32413648-32413712)
chr7 (224-289)||(6844163-6844228)
chr7 (258-343)||(14677153-14677238)
chr7 (237-289)||(44501441-44501493)
[»] chr8 (2 HSPs)
chr8 (221-330)||(35335844-35335953)
chr8 (229-301)||(27701888-27701960)
[»] chr2 (2 HSPs)
chr2 (246-292)||(43864058-43864104)
chr2 (229-290)||(43875208-43875269)


Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 25602031 - 25601657
Alignment:
Q  1 attggagaatgagatcattatcacccctaacatagactcctaattcgtggagttgggaattatgagaggaaacatactttaaaatctttttgaggagtcg 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25602031 attggagaatgagatcactatcacccctaacatagactcctaattcgtggagttgggaattatgagaggaaacatactttaaaatctttttgaggagtcg 25601932  T
Q  101 aggctggatattaccatcacagtcaagatcaagagcattcaatgaagctgagctatcacgaagagtcaaaatcttagagatgaatgccgcaaaactcttt 200  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  25601931 aggctggatgttaccatcacagtcaagatcaagagcattcaatgaagctgagctatcacgaagagtcaaaatcttagagacgaatgccgcaaaactcttt 25601832  T
Q  201 atagtgggaaattcagaggaatgcaatataagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttgg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  25601831 atagtgggaaattcagaggaatgcaatataagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacagcatgtttgg 25601732  T
Q  301 tattacaaaatgacaaaatatgaaggagaacacagtcgggtaaatcactcaatctgtcttcatgctcgttctcag 375  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25601731 tattacaaaatgacaaaatatgaaggagaacacagtcgggtaaatcactcaatctgtcttcatgctcgttctcag 25601657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 6 - 363
Target Start/End: Complemental strand, 25597230 - 25596864
Alignment:
Q  6 agaatgagatcattatcacccctaacatagactcctaattcgtggagttgggaattatgagaggaaacatactttaaaatctttttgaggagtcgaggct 105  Q
    ||||||||| || |||||||||||||| ||| |||||||||  | || |||||||||||||| |||||||| | ||| |||||||||||||||  || |     
T  25597230 agaatgagaccactatcacccctaacagagattcctaattcccgaaggtgggaattatgagaagaaacatagtctaatatctttttgaggagttcagacg 25597131  T
Q  106 ggatattaccatcacag---------tcaagatcaagagcattcaatgaagctgagctatcacgaagagtcaaaatcttagagatgaatgccgcaaaact 196  Q
    |||||||||||||| ||         |||||||||||||||| || ||||| || ||||||||||||||| ||||||||||| | | |||  | |||| |    
T  25597130 ggatattaccatcatagggtgtacggtcaagatcaagagcatgcagtgaagttgtgctatcacgaagagttaaaatcttagatacggatgaggtaaaatt 25597031  T
Q  197 ctttatagtgggaaattcagaggaatgcaatataagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgt 296  Q
    ||  |||||||| ||||||  | ||||||||||||||||||||||| |||||||||||| ||||||||| || |||||||||||||||||||||||||      
T  25597030 ctccatagtggggaattcaaggcaatgcaatataagggtgggaatatgtttccaaagattcttccatctcgtagacaaaatgcaagtttgaacggcatac 25596931  T
Q  297 ttggtattacaaaatgacaaaatatgaaggagaacacagtcgggtaaatcactcaatctgtcttcat 363  Q
    ||||||||  ||||||||||||| ||||| ||||||  |||||||||||| ||||||||||||||||    
T  25596930 ttggtattcaaaaatgacaaaatgtgaagaagaacattgtcgggtaaatcgctcaatctgtcttcat 25596864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 5e-35; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 38 - 349
Target Start/End: Original strand, 36643440 - 36643751
Alignment:
Q  38 tcctaattcgtggagttgggaattatgagaggaaacatactttaaaatctttttgaggagtcgaggctggatattaccatcacagtcaagatcaagagca 137  Q
    ||||||||||||||| |||| |||||| ||| ||| ||| |||||||||||||| |||||| |||| |  |||| ||||  ||  |||||||  |||||     
T  36643440 tcctaattcgtggaggtgggtattatgggagcaaatataatttaaaatctttttaaggagttgaggttcaatatcaccacgacgatcaagattgagagct 36643539  T
Q  138 ttcaatgaagctgagctatcacgaagagtcaaaatcttagagatgaatgccgcaaaactctttatagtgggaaattcagaggaatgcaatataagggtgg 237  Q
    | ||  |||| ||||||||  |||||||||||||| ||||| | ||||   |||||  |||| | ||| | ||| |  |||||||| ||||||||||| |    
T  36643540 tgcagagaagttgagctattgcgaagagtcaaaatgttagacacgaatatggcaaatttcttgacagttgaaaagtttgaggaatgtaatataagggtag 36643639  T
Q  238 gaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggagaacacagtc 337  Q
    ||||||||  |||||||| ||||||||||||||||||||  || |||||||| ||||||||||  |   ||||||| ||||| ||||||| |||||| ||    
T  36643640 gaatacgtgcccaaagatgcttccatcttgtggacaaaacacaggtttgaacagcatgtttggagtccaaaaatgataaaatgtgaaggataacacactc 36643739  T
Q  338 gggtaaatcact 349  Q
    |||||| |||||    
T  36643740 gggtaagtcact 36643751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 38 - 362
Target Start/End: Original strand, 36636745 - 36637069
Alignment:
Q  38 tcctaattcgtggagttgggaattatgagaggaaacatactttaaaatctttttgaggagtcgaggctggatattaccatcacagtcaagatcaagagca 137  Q
    |||||| || ||||| |||| |||||| ||||||||||| |||||||||||||| |||||| ||||||  || ||||||| || |||||||||||||||     
T  36636745 tcctaaatcctggaggtgggtattatgggaggaaacatagtttaaaatctttttaaggagttgaggctcaatgttaccatgacggtcaagatcaagagcg 36636844  T
Q  138 ttcaatgaagctgagctatcacgaagagtcaaaatcttagagatgaatgccgcaaaactctttatagtgggaaattcagaggaatgcaatataagggtgg 237  Q
    | || || || |||| |||||||||||||||| || ||||| |  ||    |||||   ||| | ||||| ||||   || | || ||| ||||| || |    
T  36636845 tgcagtgcagttgaggtatcacgaagagtcaatatgttagacacaaacatggcaaattgcttaacagtggaaaatcttgatgcatacaacataagagttg 36636944  T
Q  238 gaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggagaacacagtc 337  Q
    ||||||||||||| ||||   |||||||  | |||||||  ||||||   ||  |||||||||||||  ||||||||||||| |||||||  | || |||    
T  36636945 gaatacgtttccagagatgtctccatctcttagacaaaacacaagttctgacaacatgtttggtattcaaaaatgacaaaatgtgaaggattataccgtc 36637044  T
Q  338 gggtaaatcactcaatctgtcttca 362  Q
    |||||| |||||||  |||||||||    
T  36637045 gggtaagtcactcagcctgtcttca 36637069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 216 - 362
Target Start/End: Original strand, 55967007 - 55967153
Alignment:
Q  216 gaggaatgcaatataagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgaca 315  Q
    ||||||||||| |||||||  |||| | ||||||| |||||  ||||||||||||||||||  ||||||  || | |||| ||||| ||  ||||||| |    
T  55967007 gaggaatgcaaaataagggctggaacatgtttccagagatatctccatcttgtggacaaaacacaagttctaatgacatgcttggtcttcaaaaatgata 55967106  T
Q  316 aaatatgaaggagaacacagtcgggtaaatcactcaatctgtcttca 362  Q
    |||| ||||||||||||| ||||||||| |||||  |||||||||||    
T  55967107 aaatgtgaaggagaacactgtcgggtaagtcactttatctgtcttca 55967153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 219 - 331
Target Start/End: Original strand, 36613342 - 36613454
Alignment:
Q  219 gaatgcaatataagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaa 318  Q
    ||||||||  |||| || |||||| ||||||||||||||||||| |||||||||||||  ||||||||| |||||| | |||  |   ||||||||||||    
T  36613342 gaatgcaaattaagagttggaataagtttccaaagatacttccaccttgtggacaaaacacaagtttgatcggcatatgtggcgtccaaaaatgacaaaa 36613441  T
Q  319 tatgaaggagaac 331  Q
    | |||||||||||    
T  36613442 tgtgaaggagaac 36613454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 219 - 363
Target Start/End: Original strand, 38863134 - 38863278
Alignment:
Q  219 gaatgcaatataagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaa 318  Q
    |||||||||||||| |  |||||||||||| | ||||  ||||||||  |||||||||  |||||| ||| |||||||||||||||  |  |||||||||    
T  38863134 gaatgcaatataagagatggaatacgtttcgagagatgtttccatctcttggacaaaacacaagttcgaatggcatgtttggtattcaacgatgacaaaa 38863233  T
Q  319 tatgaaggagaacacagtcgggtaaatcactcaatctgtcttcat 363  Q
    | | |||||||| || ||||||||| ||||||   ||||||||||    
T  38863234 tgtaaaggagaataccgtcgggtaagtcactcggcctgtcttcat 38863278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 237 - 331
Target Start/End: Complemental strand, 35974097 - 35974003
Alignment:
Q  237 ggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggagaac 331  Q
    |||||||||||||| ||||   ||||||||||||||||||| ||| |||||||||| ||||| ||||   | ||||||||||| |||||||||||    
T  35974097 ggaatacgtttccagagatgtctccatcttgtggacaaaatacaactttgaacggcctgttttgtatcgaacaatgacaaaatgtgaaggagaac 35974003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 202 - 286
Target Start/End: Complemental strand, 18364326 - 18364242
Alignment:
Q  202 tagtgggaaattcagaggaatgcaatataagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttg 286  Q
    |||||| ||| || ||||||||||| ||||| || ||||| |||||||||||||  ||||||||||| ||||||||| |||||||    
T  18364326 tagtggaaaagtctgaggaatgcaacataagagttggaatgcgtttccaaagatgtttccatcttgtagacaaaatggaagtttg 18364242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 239 - 351
Target Start/End: Complemental strand, 35968397 - 35968285
Alignment:
Q  239 aatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggagaacacagtcg 338  Q
    |||||||||||| ||||  | ||||||| ||||||||| ||||||||||||| | ||||| ||||   | ||||||||||| ||||||||||| | ||||    
T  35968397 aatacgtttccagagatgttcccatcttttggacaaaacgcaagtttgaacgacctgttttgtatccaataatgacaaaatgtgaaggagaactccgtcg 35968298  T
Q  339 ggtaaatcactca 351  Q
    | ||| |||||||    
T  35968297 gctaactcactca 35968285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 202 - 286
Target Start/End: Original strand, 36598599 - 36598683
Alignment:
Q  202 tagtgggaaattcagaggaatgcaatataagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttg 286  Q
    |||||| ||| || ||||||||||| ||||| || ||||| |||||||||||||  ||||||||||| ||||||||| |||||||    
T  36598599 tagtggaaaagtctgaggaatgcaacataagagttggaatgcgtttccaaagatgtttccatcttgtagacaaaatggaagtttg 36598683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 216 - 363
Target Start/End: Complemental strand, 18083168 - 18083021
Alignment:
Q  216 gaggaatgcaatataagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgaca 315  Q
    ||||||| ||||| ||| || |||||| ||||||| | ||  ||||||||| | ||||||| ||||||| ||||  ||| |||||| ||  |||||||||    
T  18083168 gaggaatccaatacaagagtaggaatatgtttccatatatctttccatcttctagacaaaacgcaagttcgaacaccatctttggtgtttaaaaatgaca 18083069  T
Q  316 aaatatgaaggagaacacagtcgggtaaatcactcaatctgtcttcat 363  Q
    |||||  ||||| ||||| ||  ||||| |||||||| || |||||||    
T  18083068 aaatacaaaggataacactgttaggtaagtcactcaacctatcttcat 18083021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 48 - 151
Target Start/End: Original strand, 36613165 - 36613268
Alignment:
Q  48 tggagttgggaattatgagaggaaacatactttaaaatctttttgaggagtcgaggctggatattaccatcacagtcaagatcaagagcattcaatgaag 147  Q
    ||||| |||| |||||  ||||||||||| || ||||||||||| |||| ||||||||  ||||||||   |||||||| |||||| |||| ||||| ||    
T  36613165 tggaggtgggtattatctgaggaaacataattcaaaatctttttaaggattcgaggctcaatattacctctacagtcaaaatcaagggcatccaatgcag 36613264  T
Q  148 ctga 151  Q
    ||||    
T  36613265 ctga 36613268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 216 - 363
Target Start/End: Original strand, 36617513 - 36617660
Alignment:
Q  216 gaggaatgcaatataagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgaca 315  Q
    ||||||| ||||| ||| || |||||| ||||||| | ||  ||||||||| | ||||||| ||||||| ||||  ||| |||||| ||  |||||||||    
T  36617513 gaggaatccaatacaagagtaggaatatgtttccatatatctttccatcttctagacaaaacgcaagttcgaacaccatctttggtgtttaaaaatgaca 36617612  T
Q  316 aaatatgaaggagaacacagtcgggtaaatcactcaatctgtcttcat 363  Q
    |||||  ||||| ||||| ||  ||||| |||||||| || |||||||    
T  36617613 aaatacaaaggataacactgttaggtaagtcactcaacctatcttcat 36617660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 289
Target Start/End: Complemental strand, 3978206 - 3978136
Alignment:
Q  219 gaatgcaatataagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaac 289  Q
    ||||||||| |||| || |||| |||||||||||||| |||  |||||||||| |||| ||||||||||||    
T  3978206 gaatgcaatgtaagagtaggaagacgtttccaaagatccttatatcttgtggataaaacgcaagtttgaac 3978136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 363
Target Start/End: Complemental strand, 18359284 - 18359158
Alignment:
Q  237 ggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggagaacacagt 336  Q
    |||||| |||||||||||| |||||| ||| |||||||||||| |||| ||||   |||||||| ||   | | ||||||||| ||||| |||||||| |    
T  18359284 ggaatatgtttccaaagatgcttccaccttttggacaaaatgccagttcgaactcgatgtttggaatccaacattgacaaaatgtgaagaagaacacaat 18359185  T
Q  337 cgggtaaatcactcaatctgtcttcat 363  Q
    | || || |||||||  ||||||||||    
T  18359184 caggcaagtcactcagcctgtcttcat 18359158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 363
Target Start/End: Original strand, 36603644 - 36603770
Alignment:
Q  237 ggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggagaacacagt 336  Q
    |||||| |||||||||||| |||||| ||| |||||||||||| |||| ||||   |||||||| ||   | | ||||||||| ||||| |||||||| |    
T  36603644 ggaatatgtttccaaagatgcttccaccttttggacaaaatgccagttcgaactcgatgtttggaatccaacattgacaaaatgtgaagaagaacacaat 36603743  T
Q  337 cgggtaaatcactcaatctgtcttcat 363  Q
    | || || |||||||  ||||||||||    
T  36603744 caggcaagtcactcagcctgtcttcat 36603770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 93 - 178
Target Start/End: Original strand, 36668463 - 36668548
Alignment:
Q  93 aggagtcgaggctggatattaccatcacagtcaagatcaagagcattcaatgaagctgagctatcacgaagagtcaaaatcttaga 178  Q
    ||||||||||| |  | |||||||| || ||||| ||||||| |   ||||| || ||||||||||||||||||||||||||||||    
T  36668463 aggagtcgaggttcaaaattaccattacggtcaacatcaagaacgcgcaatgcagttgagctatcacgaagagtcaaaatcttaga 36668548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 178
Target Start/End: Complemental strand, 35968566 - 35968458
Alignment:
Q  70 aaacatactttaaaatctttttgaggagtcgaggctggatattaccatcacagtcaagatcaagagcattcaatgaagctgagctatcacgaagagtcaa 169  Q
    ||||||| | ||||| |||||  |||||| ||| ||  |||||||||| || ||||| ||||||||| | || || |  |||| ||||||||||||||||    
T  35968566 aaacatagtctaaaaccttttcaaggagttgagactcaatattaccatgacggtcaatatcaagagcttgcagtggaattgaggtatcacgaagagtcaa 35968467  T
Q  170 aatcttaga 178  Q
    |||||||||    
T  35968466 aatcttaga 35968458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 38 - 105
Target Start/End: Complemental strand, 36909831 - 36909764
Alignment:
Q  38 tcctaattcgtggagttgggaattatgagaggaaacatactttaaaatctttttgaggagtcgaggct 105  Q
    ||||||||| ||||| |||| |||||| || | |||||| |||||||||||||| |||||| ||||||    
T  36909831 tcctaattcatggaggtgggtattatgggaagtaacatagtttaaaatctttttaaggagttgaggct 36909764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 48 - 330
Target Start/End: Original strand, 19674990 - 19675272
Alignment:
Q  48 tggagttgggaattatgagaggaaacatactttaaaatctttttgaggagtcgaggctggatattaccatcacagtcaagatcaagagcattcaatgaag 147  Q
    ||||| |||| |||||| ||| ||||||| | |||||||||||| |||| ||||||||  |||| ||||| || |||||||||||| || | |||||||     
T  19674990 tggaggtgggtattatgtgagcaaacataatctaaaatctttttaaggattcgaggctcaatatgaccatgacggtcaagatcaagggcgtgcaatgaaa 19675089  T
Q  148 ctgagctatcacgaagagtcaaaatcttagagatgaatgccgcaaaactctttatagtgggaaattcagaggaatgcaatataagggtgggaatacgttt 247  Q
     |||| ||||||||||||||||||||||||  | ||||  || |||   ||| | ||||| |||||  || |||||||| ||||| || |||||| ||||    
T  19675090 ttgaggtatcacgaagagtcaaaatcttaggcacgaatttcgaaaattgcttcagagtggaaaatttggaagaatgcaaaataagagttggaataagttt 19675189  T
Q  248 ccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggagaa 330  Q
    ||| |||| | ||||||| ||||||||||  |||||||||||||||| ||| |  |   ||||||||||||| ||||||||||    
T  19675190 ccagagattcctccatctcgtggacaaaacacaagtttgaacggcatattttgcgtccaaaaatgacaaaatgtgaaggagaa 19675272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 48 - 330
Target Start/End: Original strand, 19658151 - 19658433
Alignment:
Q  48 tggagttgggaattatgagaggaaacatactttaaaatctttttgaggagtcgaggctggatattaccatcacagtcaagatcaagagcattcaatgaag 147  Q
    ||||| |||| |||||| ||| ||||||| | |||||||||||| |||| ||||||||  |||| ||||| || |||||||||||| || | |||||||     
T  19658151 tggaggtgggtattatgtgagcaaacataatctaaaatctttttaaggattcgaggctcaatatgaccatgacggtcaagatcaagggcgtgcaatgaaa 19658250  T
Q  148 ctgagctatcacgaagagtcaaaatcttagagatgaatgccgcaaaactctttatagtgggaaattcagaggaatgcaatataagggtgggaatacgttt 247  Q
     |||| ||||||||||||||||||||||||  | ||||   | |||   ||| | ||||| |||||  || |||||||| ||||| || |||||| ||||    
T  19658251 ttgaggtatcacgaagagtcaaaatcttaggcacgaatttggaaaattgcttcagagtggaaaatttggaagaatgcaaaataagagttggaataagttt 19658350  T
Q  248 ccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggagaa 330  Q
    ||| |||| | ||||||| ||||||||||  |||||||||||||||| ||| |  |   ||||||||||||| ||||||||||    
T  19658351 ccagagattcctccatctcgtggacaaaacacaagtttgaacggcatattttgcgtccaaaaatgacaaaatgtgaaggagaa 19658433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 257 - 343
Target Start/End: Original strand, 17667110 - 17667196
Alignment:
Q  257 cttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggagaacacagtcgggtaa 343  Q
    |||||||||||| ||||||| ||||||| ||||  | | |||||| ||  ||||||||||||||||||||| ||||| |||||||||    
T  17667110 cttccatcttgtagacaaaacgcaagttcgaacaacttctttggtgtttaaaaatgacaaaatatgaaggataacactgtcgggtaa 17667196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 301
Target Start/End: Complemental strand, 25064332 - 25064275
Alignment:
Q  244 gtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggt 301  Q
    ||||||||||||  |||||||||| |||||| ||||| ||||| || |||||||||||    
T  25064332 gtttccaaagattgttccatcttggggacaatatgcatgtttggactgcatgtttggt 25064275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 86 - 360
Target Start/End: Original strand, 42602730 - 42603004
Alignment:
Q  86 ctttttgaggagtcgaggctggatattaccatcacagtcaagatcaagagcattcaatgaagctgagctatcacgaagagtcaaaatcttagagatgaat 185  Q
    |||||| |||||| | ||||  ||| |||||| || || |||||||||||||| || || || |||| ||||||||||||||||||||||||| |  |||    
T  42602730 ctttttaaggagttgcggctcaatactaccatgacggtgaagatcaagagcatgcagtgcagttgaggtatcacgaagagtcaaaatcttagacacaaat 42602829  T
Q  186 gccgcaaaactctttatagtgggaaattcagaggaatgcaatataagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagttt 285  Q
       | ||||  ||| | ||||||||| |  ||||||| ||||||||| || |||||||||||||| | |  |||||||||| ||||||| ||||||||||    
T  42602830 atggaaaaatgcttcacagtgggaaagtttgaggaatccaatataagagtaggaatacgtttccacataagcttccatcttttggacaagatgcaagttt 42602929  T
Q  286 gaacggcatgtttggtattacaaaatgacaaaatatgaaggagaacacagtcgggtaaatcactcaatctgtctt 360  Q
    ||||||  |||||||  |||  |||||||||||| ||||||| || |||||| ||||| |||||||  |||||||    
T  42602930 gaacggtgtgtttggagttaagaaatgacaaaatgtgaaggataagacagtcaggtaagtcactcagcctgtctt 42603004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 363
Target Start/End: Original strand, 28928442 - 28928576
Alignment:
Q  229 taagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggag 328  Q
    |||||||||||| ||| ||||| |||| ||||||||  ||||| |  |||||||||||||| || | |||||  ||  |||| || || || ||||| ||    
T  28928442 taagggtgggaagacgcttccagagattcttccatcgagtggagagtatgcaagtttgaacagcttctttggcttttaaaaaagataatatgtgaagtag 28928541  T
Q  329 aacacagtcgggtaaatcactcaatctgtcttcat 363  Q
    ||||||||| || |||||||| ||  |||||||||    
T  28928542 aacacagtccgggaaatcactgaacatgtcttcat 28928576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 237 - 362
Target Start/End: Original strand, 33844280 - 33844405
Alignment:
Q  237 ggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggagaacacagt 336  Q
    |||||||||||||| ||||  |||||||| |||||||||||||||||||||||||| | || ||| ||  ||||||||||||| | ||  ||||  ||||    
T  33844280 ggaatacgtttccagagatgtttccatctggtggacaaaatgcaagtttgaacggcgttttcggttttcaaaaatgacaaaatgtaaataagaatgcagt 33844379  T
Q  337 cgggtaaatcactcaatctgtcttca 362  Q
    ||||||| ||||| | ||| ||||||    
T  33844380 cgggtaagtcacttagtctatcttca 33844405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 362
Target Start/End: Original strand, 33840288 - 33840413
Alignment:
Q  237 ggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggagaacacagt 336  Q
    |||||||||||||||||||  |||||||| |||||||||||||||||| |||| || | || | |  |  ||||||||||||| | ||  ||||  ||||    
T  33840288 ggaatacgtttccaaagatgtttccatctggtggacaaaatgcaagttcgaacagcgtattcgattctcaaaaatgacaaaatgtaaacaagaaggcagt 33840387  T
Q  337 cgggtaaatcactcaatctgtcttca 362  Q
    ||||||| ||||| | ||||||||||    
T  33840388 cgggtaagtcacttagtctgtcttca 33840413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 363
Target Start/End: Original strand, 7140746 - 7140852
Alignment:
Q  257 cttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggagaacacagtcgggtaaatcactcaatctg 356  Q
    |||||||||| |||||||||| ||||||||||| || | ||| |||||  |||| || |  || ||||| | ||||||||||||||||||||| ||  ||    
T  7140746 cttccatcttttggacaaaatacaagtttgaactgcgtatttagtattcaaaaaagagagtatgtgaagtaaaacacagtcgggtaaatcacttaacttg 7140845  T
Q  357 tcttcat 363  Q
    |||||||    
T  7140846 tcttcat 7140852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 363
Target Start/End: Original strand, 8680360 - 8680466
Alignment:
Q  257 cttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggagaacacagtcgggtaaatcactcaatctg 356  Q
    |||||||||| |||||||||| ||||||||||| || | ||| |||||  |||| || |  || ||||| | ||||||||||| ||||||||| ||  ||    
T  8680360 cttccatcttttggacaaaatacaagtttgaactgcgtatttagtattcaaaaaagagagtatgtgaagtaaaacacagtcggctaaatcacttaacttg 8680459  T
Q  357 tcttcat 363  Q
    |||||||    
T  8680460 tcttcat 8680466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 178
Target Start/End: Original strand, 33840185 - 33840223
Alignment:
Q  140 caatgaagctgagctatcacgaagagtcaaaatcttaga 178  Q
    ||||| ||||||| |||||||||||||||||||||||||    
T  33840185 caatgcagctgagttatcacgaagagtcaaaatcttaga 33840223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 178
Target Start/End: Original strand, 33844153 - 33844215
Alignment:
Q  116 atcacagtcaagatcaagagcattcaatgaagctgagctatcacgaagagtcaaaatcttaga 178  Q
    |||||| |||| |||||||  || || || ||||||| |||||||||||||||||||||||||    
T  33844153 atcacactcaaaatcaagaatatgcagtgcagctgagttatcacgaagagtcaaaatcttaga 33844215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 237 - 301
Target Start/End: Complemental strand, 32413712 - 32413648
Alignment:
Q  237 ggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggt 301  Q
    |||| ||| ||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  32413712 ggaagacgcttccagagattcttccatcttgtggacaaaatgcaagtttgaacggcgtgtttggt 32413648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 224 - 289
Target Start/End: Complemental strand, 6844228 - 6844163
Alignment:
Q  224 caatataagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaac 289  Q
    ||||||||| ||||||| | ||||||||||||  ||||||||| |||| | |||||||||||||||    
T  6844228 caatataagagtgggaagatgtttccaaagattgttccatcttttggatagaatgcaagtttgaac 6844163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 258 - 343
Target Start/End: Complemental strand, 14677238 - 14677153
Alignment:
Q  258 ttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggagaacacagtcgggtaa 343  Q
    ||||||||||| ||||||| ||||||| ||||  | | |||||| ||  ||||||||||||||||||||| ||||| || ||||||    
T  14677238 ttccatcttgtagacaaaacgcaagttcgaacaacttctttggtgtttaaaaatgacaaaatatgaaggataacactgttgggtaa 14677153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 289
Target Start/End: Original strand, 44501441 - 44501493
Alignment:
Q  237 ggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaac 289  Q
    |||| |||||||||||||| ||||||||| | ||||||||||||||| |||||    
T  44501441 ggaagacgtttccaaagatccttccatctgggggacaaaatgcaagtctgaac 44501493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 221 - 330
Target Start/End: Complemental strand, 35335953 - 35335844
Alignment:
Q  221 atgcaatataagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaata 320  Q
    |||||||||||| || |||||||||||||| ||||  ||||||||| ||||||||| ||||||||||||  | ||||||| ||   | |||||||||||     
T  35335953 atgcaatataagtgttggaatacgtttccatagatgtttccatcttttggacaaaacgcaagtttgaacaacttgtttggaatgtaataatgacaaaatg 35335854  T
Q  321 tgaaggagaa 330  Q
    ||||| ||||    
T  35335853 tgaagtagaa 35335844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 229 - 301
Target Start/End: Original strand, 27701888 - 27701960
Alignment:
Q  229 taagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggt 301  Q
    ||||||| |||| ||||||||| ||||  |||||||||||||| | ||||  |||||||||||||||||||||    
T  27701888 taagggttggaagacgtttccagagattgttccatcttgtggaaagaatggtagtttgaacggcatgtttggt 27701960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Original strand, 43864058 - 43864104
Alignment:
Q  246 ttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggc 292  Q
    ||||||||||   |||||||| |||||||||||||||||||||||||    
T  43864058 ttccaaagattgatccatcttttggacaaaatgcaagtttgaacggc 43864104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 290
Target Start/End: Original strand, 43875208 - 43875269
Alignment:
Q  229 taagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacg 290  Q
    |||| ||||||| ||  ||||||||||   |||||||| |||||||||||||||||||||||    
T  43875208 taagagtgggaagactcttccaaagattgatccatcttttggacaaaatgcaagtttgaacg 43875269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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