View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11191_high_1 (Length: 920)

Name: NF11191_high_1
Description: NF11191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11191_high_1
NF11191_high_1
[»] chr3 (12 HSPs)
chr3 (557-864)||(20860205-20860512)
chr3 (308-521)||(20859952-20860165)
chr3 (16-203)||(20859745-20859931)
chr3 (310-405)||(27036001-27036096)
chr3 (275-409)||(29582676-29582810)
chr3 (563-855)||(29582229-29582522)
chr3 (553-861)||(36337499-36337807)
chr3 (300-401)||(10494297-10494398)
chr3 (300-387)||(27024762-27024849)
chr3 (244-336)||(26799489-26799581)
chr3 (311-410)||(12718037-12718135)
chr3 (787-864)||(41174796-41174872)
[»] chr5 (19 HSPs)
chr5 (232-507)||(25723971-25724253)
chr5 (553-855)||(8840427-8840729)
chr5 (555-834)||(22417184-22417462)
chr5 (232-410)||(22407021-22407199)
chr5 (300-496)||(10134453-10134656)
chr5 (231-509)||(36520220-36520501)
chr5 (257-512)||(8840773-8841033)
chr5 (232-407)||(22416859-22417034)
chr5 (300-508)||(27690009-27690224)
chr5 (585-864)||(36520505-36520785)
chr5 (575-739)||(22407372-22407537)
chr5 (715-864)||(27690436-27690584)
chr5 (232-410)||(8242523-8242701)
chr5 (235-394)||(23344331-23344488)
chr5 (354-410)||(27486201-27486257)
chr5 (573-864)||(28443090-28443381)
chr5 (786-864)||(27495148-27495225)
chr5 (787-844)||(27485761-27485818)
chr5 (307-364)||(27949096-27949153)
[»] chr1 (14 HSPs)
chr1 (575-847)||(28639812-28640085)
chr1 (232-515)||(28639464-28639754)
chr1 (232-515)||(35989542-35989832)
chr1 (546-864)||(48182206-48182524)
chr1 (300-515)||(41933055-41933276)
chr1 (553-757)||(35989868-35990074)
chr1 (645-851)||(7134538-7134743)
chr1 (575-864)||(41933334-41933623)
chr1 (575-758)||(41932412-41932596)
chr1 (766-864)||(17493441-17493539)
chr1 (255-465)||(21535350-21535571)
chr1 (715-855)||(48892095-48892234)
chr1 (356-410)||(48181907-48181961)
chr1 (230-323)||(15247743-15247836)
[»] chr7 (10 HSPs)
chr7 (232-515)||(18500667-18500955)
chr7 (645-758)||(42012335-42012449)
chr7 (232-410)||(18043411-18043588)
chr7 (232-284)||(6056157-6056209)
chr7 (754-846)||(18042990-18043082)
chr7 (625-732)||(18500448-18500556)
chr7 (750-852)||(48374307-48374410)
chr7 (555-594)||(48374764-48374803)
chr7 (342-399)||(1852604-1852661)
chr7 (300-345)||(26187815-26187860)
[»] chr6 (4 HSPs)
chr6 (232-408)||(33554668-33554844)
chr6 (630-855)||(33555062-33555288)
chr6 (300-401)||(28547281-28547382)
chr6 (292-364)||(20819014-20819090)
[»] chr4 (14 HSPs)
chr4 (561-830)||(52598253-52598521)
chr4 (232-409)||(16741317-16741494)
chr4 (233-406)||(37397466-37397640)
chr4 (232-506)||(52598564-52598840)
chr4 (553-712)||(30452531-30452690)
chr4 (310-410)||(1651894-1651994)
chr4 (715-864)||(42247163-42247312)
chr4 (787-864)||(56084099-56084175)
chr4 (235-407)||(30452841-30453013)
chr4 (766-846)||(50867407-50867487)
chr4 (796-847)||(19509157-19509208)
chr4 (796-847)||(20182817-20182868)
chr4 (560-594)||(16741589-16741623)
chr4 (787-864)||(40602728-40602804)
[»] chr2 (5 HSPs)
chr2 (555-864)||(815562-815876)
chr2 (345-515)||(815919-816095)
chr2 (255-401)||(21484805-21484951)
chr2 (313-442)||(41254713-41254849)
chr2 (311-399)||(37127522-37127610)
[»] chr8 (3 HSPs)
chr8 (571-864)||(32124306-32124598)
chr8 (300-410)||(32124028-32124138)
chr8 (663-847)||(17865019-17865203)
[»] scaffold0160 (1 HSPs)
scaffold0160 (244-410)||(16827-16993)
[»] scaffold0048 (2 HSPs)
scaffold0048 (300-378)||(65250-65328)
scaffold0048 (300-401)||(52269-52370)
[»] scaffold0054 (1 HSPs)
scaffold0054 (300-367)||(18618-18685)
[»] scaffold0001 (2 HSPs)
scaffold0001 (300-401)||(426840-426941)
scaffold0001 (790-851)||(427261-427321)
[»] scaffold0210 (1 HSPs)
scaffold0210 (310-394)||(7762-7846)
[»] scaffold0376 (1 HSPs)
scaffold0376 (766-836)||(7204-7274)


Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 557 - 864
Target Start/End: Original strand, 20860205 - 20860512
Alignment:
Q  557 tcgccatgaaaatcctccaaaaatcaaacttaaacacattatggtgttgttcagattgtagaatccaaaaatatttagagagtttcatattgtataatct 656  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  20860205 tcgccatgaaaatcctccaaaaatcaaacttaaacacattctggtgttgttcagattgtagaatccgaaaatatttagagagtttcatattgtataatct 20860304  T
Q  657 gaaacctcccagactacgtggattgtggcatttcacccaaggtttgaacagtttgtcggtgtttaatgtatttttgatcggttggagcatgaaaaatgtt 756  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  20860305 gaaacctcccagactacgtggattgtggcatttcacccaaggtttgaatagtttgtgggtgtttaatgtatttttgatcggttggagcatgaaaaatgtt 20860404  T
Q  757 tcatttcattgtagttacagcgtaggacaggtttaaggctataaatagccttacatgcttcaacaatttcattcattcatcacttctcatcttttcttat 856  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20860405 tcatttcattgtagttagagcctaggacaggtttaaggctataaatagccttacatgcttcaacaatttcattcattcatcacttctcatcttttcttat 20860504  T
Q  857 gttttctt 864  Q
    ||||||||    
T  20860505 gttttctt 20860512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 170; E-Value: 9e-91
Query Start/End: Original strand, 308 - 521
Target Start/End: Original strand, 20859952 - 20860165
Alignment:
Q  308 atgatctaactcaaaacaatcatcttaaaataccttgtctttcatcattatgttgcatatatgattccgaagaggttcttgtgaacttgatccaattgac 407  Q
    |||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||| |||||    
T  20859952 atgatctaactcaaaacaatcatcttgaaataccttatctttcaacattatgttgcagatatgattctgaagaggttcttgtgaacttgatccagttgac 20860051  T
Q  408 ctgaaatatgtaagttggtaggctagctggatcaaacacaaaagtacctcttcgaacatcttcccataagattgatcacttctattattgtgttgtttta 507  Q
     ||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  20860052 ttgaaatatgtaagttggtaggctagttggatcaagcacaaaagcacctcttcgaacatcttcccagaagattgatcacttctattattgtgttgtttta 20860151  T
Q  508 agttgtttttgtac 521  Q
    ||||||||||||||    
T  20860152 agttgtttttgtac 20860165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 137; E-Value: 5e-71
Query Start/End: Original strand, 16 - 203
Target Start/End: Original strand, 20859745 - 20859931
Alignment:
Q  16 gaaacaaccgaattaaagcccaaaatatgtttagaaaataaannnnnnnaaaaatgagtgattagtaagtaaaatgagtgcaagcctaaaatatgcacaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20859745 gaaacaaccgaattaaagcccaaaatatgtttagaaaataaaaaaatttaaaaatgagtgattagtaagtaaaatgagtgcaagcctaaaatatgcacaa 20859844  T
Q  116 aaacttttgcttagttaacttttgatttgaattcagttgacnnnnnnnatcttcatcggaagtgcatccaaataatactaaattgatt 203  Q
    |||||||||||||||||||||||||||||||||||||||||       ||| ||||||||||||||||||||||||||||||||||||    
T  20859845 aaacttttgcttagttaacttttgatttgaattcagttgac-tttattatcatcatcggaagtgcatccaaataatactaaattgatt 20859931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 310 - 405
Target Start/End: Complemental strand, 27036096 - 27036001
Alignment:
Q  310 gatctaactcaaaacaatcatcttaaaataccttgtctttcatcattatgttgcatatatgattccgaagaggttcttgtgaacttgatccaattg 405  Q
    ||||||||||||||||||| |||| ||| ||||||||||||||| |||||||||| || | ||||||||||||||||| |||||| ||||||||||    
T  27036096 gatctaactcaaaacaatcctcttgaaacaccttgtctttcatcgttatgttgcagatctaattccgaagaggttcttatgaactcgatccaattg 27036001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 275 - 409
Target Start/End: Complemental strand, 29582810 - 29582676
Alignment:
Q  275 tgacaatataattatgccagttgaaaaggcatcatgatctaactcaaaacaatcatcttaaaataccttgtctttcatcattatgttgcatatatgattc 374  Q
    ||||||||||| |||| ||||||  ||| || ||| |||||||| |||||||||||||| ||| |||||  ||||||||||||||||||| || |||||     
T  29582810 tgacaatataaatatgtcagttggcaagacaacataatctaacttaaaacaatcatcttgaaacaccttccctttcatcattatgttgcagatctgatta 29582711  T
Q  375 cgaagaggttcttgtgaacttgatccaattgacct 409  Q
    |||| |||||||||| ||||||||| | |||||||    
T  29582710 cgaaaaggttcttgtaaacttgatctagttgacct 29582676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 563 - 855
Target Start/End: Complemental strand, 29582522 - 29582229
Alignment:
Q  563 tgaaaatcctccaaaaatcaaacttaaacacattatggtgttgttcagattgtagaatccaaaaatatttagagagtttcatattgtataatctgaaacc 662  Q
    |||||| ||| |||| |||||||||||||||| | | | | ||||  |||| || ||||| ||| | |||||| | ||||  ||| |||||||| |||||    
T  29582522 tgaaaaccctgcaaacatcaaacttaaacacaatctagggctgtttggattatacaatccgaaagtgtttagatattttcggattatataatctaaaacc 29582423  T
Q  663 tcccagactacgtggattgtggcatttcacccaaggtttgaacagtttgtcg-gtgtttaatgtatttttgatcggttggagcatgaaaaatgtttcatt 761  Q
    ||| |||||  ||| | |||||| |||||||||||||||| |   ||||| | |||||||||| ||||| | ||||||||| |||   ||||||||| ||    
T  29582422 tcctagactgtgtgaagtgtggcgtttcacccaaggtttggatgatttgtggtgtgtttaatgcattttcggtcggttggaacattgtaaatgtttcctt 29582323  T
Q  762 tcattgtagttacagcgtaggacaggtttaaggctataaatagccttacatgcttcaacaatttcattcattcatcacttctcatcttttctta 855  Q
    | | ||||||||||   ||||| |||||||   |||||| || |||| ||||||||||||| |||||| ||||  || || ||||| |||||||    
T  29582322 ttactgtagttacaatctaggataggtttatacctataagtacccttgcatgcttcaacaaattcattaattctccatttatcatcctttctta 29582229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 553 - 861
Target Start/End: Complemental strand, 36337807 - 36337499
Alignment:
Q  553 tcattcgccatgaaaatcctccaaaaatcaaacttaaacacattatggtgttgttcagattgtagaatccaaaaatatttagagagtttcatattgtata 652  Q
    |||||| ||||||||| ||||||| ||||||||||||||||| | ||  | | ||||| ||  | ||||||||||  | ||||  |||||| ||| ||||    
T  36337807 tcattcaccatgaaaaccctccaagaatcaaacttaaacacaatctga-gatattcagcttacacaatccaaaaagttctagaatgtttcagattatata 36337709  T
Q  653 atctgaaacctcccagactacgtggattgtggcatttcacccaaggtttgaacagtttgtcg-gtgtttaatgtatttttgatcggttggagcatgaaaa 751  Q
    ||||||||||||| ||||| | |||| |||| |||| ||||||| ||||| || |||||| | |||||||||| ||||||  ||||||   ||||   ||    
T  36337708 atctgaaacctcctagactgcatggaatgtgacattacacccaaagtttggacggtttgtggtgtgtttaatgcatttttagtcggtttatgcattctaa 36337609  T
Q  752 atgtttcatttcattgtagttacagcgtaggacaggtttaaggctataaatagccttacatgcttcaacaatttcattcattcatcacttctcatctttt 851  Q
    | ||||| ||  | |||||||||| | || || ||||||| || ||| ||||| | | ||||||||||||  ||||||||||  | | |||||||| |||    
T  36337608 acgtttccttcgactgtagttacaacctatgataggtttatggttatgaatagtcatgcatgcttcaacatattcattcattttttatttctcatccttt 36337509  T
Q  852 cttatgtttt 861  Q
    ||||| ||||    
T  36337508 cttatttttt 36337499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 300 - 401
Target Start/End: Original strand, 10494297 - 10494398
Alignment:
Q  300 aaggcatcatgatctaactcaaaacaatcatcttaaaataccttgtctttcatcattatgttgcatatatgattccgaagaggttcttgtgaacttgatc 399  Q
    |||||| || ||||||||||||||||||||| || ||| ||||||||||||||| |||||||||| || ||| |||||| ||||| || ||| || ||||    
T  10494297 aaggcagcaagatctaactcaaaacaatcatattgaaacaccttgtctttcatcgttatgttgcagatctgaatccgaaaaggtttttatgagctcgatc 10494396  T
Q  400 ca 401  Q
    ||    
T  10494397 ca 10494398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 300 - 387
Target Start/End: Complemental strand, 27024849 - 27024762
Alignment:
Q  300 aaggcatcatgatctaactcaaaacaatcatcttaaaataccttgtctttcatcattatgttgcatatatgattccgaagaggttctt 387  Q
    |||||| || |||||||||||||| |||| |||| ||| ||||||||||||||| || ||||||| || | |||||||||||||||||    
T  27024849 aaggcagcaggatctaactcaaaataatcctcttgaaacaccttgtctttcatcgttgtgttgcagatctaattccgaagaggttctt 27024762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 244 - 336
Target Start/End: Complemental strand, 26799581 - 26799489
Alignment:
Q  244 agaggttgttttgagctacatcttgttgctttgacaatataattatgccagttgaaaaggcatcatgatctaactcaaaacaatcatcttaaa 336  Q
    |||||||| | | ||||| |||||| ||| ||||| |||||| |||  ||||||  |||||| ||||||||||||||||||||||||||||||    
T  26799581 agaggttgctattagctagatcttggtgccttgacgatataaatatatcagttggcaaggcagcatgatctaactcaaaacaatcatcttaaa 26799489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 311 - 410
Target Start/End: Complemental strand, 12718135 - 12718037
Alignment:
Q  311 atctaactcaaaacaatcatcttaaaataccttgtctttcatcattatgttgcatatatgattccgaagaggttcttgtgaacttgatccaattgacctg 410  Q
    |||||||| ||||||||| |||| ||| ||| ||||||||||| ||||||||||||| ||| | | || ||||| || ||||||||||||| ||| ||||    
T  12718135 atctaacttaaaacaatcctcttgaaacaccatgtctttcatcgttatgttgcatatctgaat-caaaaaggtttttatgaacttgatccagttggcctg 12718037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 787 - 864
Target Start/End: Complemental strand, 41174872 - 41174796
Alignment:
Q  787 gtttaaggctataaatagccttacatgcttcaacaatttcattcattcatcacttctcatcttttcttatgttttctt 864  Q
    |||| ||||||||||||| ||| ||| ||||||||| | | ||||||| ||||||| ||||||||||||  |||||||    
T  41174872 gttttaggctataaataggcttccat-cttcaacaaataccttcattcttcacttcacatcttttcttacattttctt 41174796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 117; Significance: 4e-59; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 232 - 507
Target Start/End: Original strand, 25723971 - 25724253
Alignment:
Q  232 atatgaacaccgagaggttgttttgagctacatcttgttgctttgacaatataattatgccagttgaaaaggcatcatgatctaactcaaaacaatcatc 331  Q
    ||||||||||| |||||||| | ||||||| |||||||||||||| |||||||| |||| ||||||  |||||| || ||||||||||||||||||| ||    
T  25723971 atatgaacaccaagaggttgctatgagctagatcttgttgctttggcaatataaatatgtcagttggcaaggcagcaagatctaactcaaaacaatcctc 25724070  T
Q  332 ttaaaataccttgtctttcatcattatgttgcatatatgattccgaagaggttcttgtgaacttgatccaattgacctg-------aaatatgtaagttg 424  Q
    || ||| ||| ||| |||||||||||||||| |  | ||||||| ||||||||||| ||||||||||||| ||||| ||       |||||||| |||||    
T  25724071 ttgaaacaccatgtatttcatcattatgttgtagttctgattccaaagaggttcttatgaacttgatccagttgacatgccgaaccaaatatgtcagttg 25724170  T
Q  425 gtaggctagctggatcaaacacaaaagtacctcttcgaacatcttcccataagattgatcacttctattattgtgttgtttta 507  Q
    | |||| ||||||||| || ||||||| ||||||||||||| ||||||| |||||| ||||||| | ||||||||||||||||    
T  25724171 gcaggccagctggatctaatacaaaagcacctcttcgaacaccttcccaaaagattcatcacttatgttattgtgttgtttta 25724253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 553 - 855
Target Start/End: Complemental strand, 8840729 - 8840427
Alignment:
Q  553 tcattcgccatgaaaatcctccaaaaatcaaacttaaacacattatggtgttgttcagattgtagaatccaaaaatatttagagagtttcatattgtata 652  Q
    ||||||||||||||||  || ||||||| ||||||||||| | |  ||| ||||||  |||||||||||| |||| ||||||||| ||||  |||| |||    
T  8840729 tcattcgccatgaaaacacttcaaaaataaaacttaaacatagtcaggtattgttcgaattgtagaatccgaaaacatttagagactttcggattgcata 8840630  T
Q  653 atctgaaacctcccagactacgtggattgtggcatttcacccaaggtttgaacagtttgtcg-gtgtttaatgtatttttgatcggttggagcatgaaaa 751  Q
    ||| |||||||||||| ||| |||||  ||||| |||||||||||||||| |  |||||| | |||||||||||||||||| || |||||| ||||||||    
T  8840629 atccgaaacctcccaggctaagtggaacgtggcgtttcacccaaggtttggatggtttgtggtgtgtttaatgtatttttggtcagttggatcatgaaaa 8840530  T
Q  752 atgtttcatttcattgtagttacagcgtaggacaggtttaaggctataaatagccttacatgcttcaacaatttcattcattcatcacttctcatctttt 851  Q
    | ||||| ||| ||||||||||||   |||||||||||  | ||||||||||| | | ||||||| ||||||||||||||||| || ||||  || ||||    
T  8840529 a-gtttcctttgattgtagttacaatctaggacaggttataagctataaatagtcctgcatgctttaacaatttcattcattcttcgcttcctatatttt 8840431  T
Q  852 ctta 855  Q
    ||||    
T  8840430 ctta 8840427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 555 - 834
Target Start/End: Original strand, 22417184 - 22417462
Alignment:
Q  555 attcgccatgaaaatcctccaaaaatcaaacttaaacacattatggtgttgttcagattgtagaatccaaaaatatttagagagtttcatattgtataat 654  Q
    |||||||||||||| ||   |||||||||||||||||||| | ||||||||||| |||| || ||||| ||    | | || ||||||| ||| ||||||    
T  22417184 attcgccatgaaaacccgttaaaaatcaaacttaaacacaatttggtgttgttcggattatacaatccgaattgctct-gaaagtttcaaattatataat 22417282  T
Q  655 ctgaaacctcccagactacgtggattgtggcatttcacccaaggtttgaacagtttgtcg-gtgtttaatgtatttttgatcggttggagcatgaaaaat 753  Q
    |||||||||||||||||  |||||||||||| |||||||||||||||||||||||||| | |||||||| ||||||||| ||||||   ||||    |||    
T  22417283 ctgaaacctcccagactgtgtggattgtggcgtttcacccaaggtttgaacagtttgtggtgtgtttaaagtatttttggtcggtttatgcat-tggaat 22417381  T
Q  754 gtttcatttcattgtagttacagcgtaggacaggtttaaggctataaatagccttacatgcttcaacaatttcattcattc 834  Q
    ||||| ||| | |||||||||||  ||||| || |||| |  ||||||||| ||| ||||||||||||| |||||| ||||    
T  22417382 gtttcctttgactgtagttacagtctaggatagatttacgaatataaatagtcttgcatgcttcaacaaattcattgattc 22417462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 232 - 410
Target Start/End: Original strand, 22407021 - 22407199
Alignment:
Q  232 atatgaacaccgagaggttgttttgagctacatcttgttgctttgacaatataattatgccagttgaaaaggcatcatgatctaactcaaaacaatcatc 331  Q
    ||||||||||| |||||||  | ||||||| |||||||||| |||||||||||| |||| ||||||  ||||||  |||||||||||||||||||||  |    
T  22407021 atatgaacaccaagaggtttctatgagctatatcttgttgccttgacaatataaatatgtcagttggcaaggcaaaatgatctaactcaaaacaatccgc 22407120  T
Q  332 ttaaaataccttgtctttcatcattatgttgcatatatgattccgaagaggttcttgtgaacttgatccaattgacctg 410  Q
    || ||| |||||   |||||||||||||||||| || | ||| | |||||||| |||||||||||||||| ||||||||    
T  22407121 ttgaaagaccttacttttcatcattatgttgcaaatttaattacaaagaggttgttgtgaacttgatccacttgacctg 22407199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 300 - 496
Target Start/End: Original strand, 10134453 - 10134656
Alignment:
Q  300 aaggcatcatgatctaactcaaaacaatcatcttaaaataccttgtctttcatcattatgttgcatatatgattccgaagaggttcttgtgaacttgatc 399  Q
    |||||| |||||||||||||||||| ||| |||| ||| || |||  |||||||||||||||||| || | |||||||| |||||||| |||||||||||    
T  10134453 aaggcagcatgatctaactcaaaacgatcctcttgaaacactttgcatttcatcattatgttgcagatctaattccgaataggttcttatgaacttgatc 10134552  T
Q  400 caattgacct-------gaaatatgtaagttggtaggctagctggatcaaacacaaaagtacctcttcgaacatcttcccataagattgatcacttctat 492  Q
    ||||||||||       ||||||||| |||||  |||||||| |||||||   |||||  ||||||||||||| ||| | | |||||| |||||||||||    
T  10134553 caattgacctgccggtcgaaatatgtcagttgacaggctagcaggatcaagtgcaaaatcacctcttcgaacacctttcaagaagattcatcacttctat 10134652  T
Q  493 tatt 496  Q
    ||||    
T  10134653 tatt 10134656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 231 - 509
Target Start/End: Original strand, 36520220 - 36520501
Alignment:
Q  231 aatatgaacaccgagaggttgttttgagctacatcttgttgctttgacaatataattatgccagttgaaaaggcatcatgatctaactcaaaacaatcat 330  Q
    |||||||||||| ||| |||| | ||||||| || ||||||| ||| |||||||| | ||  |||||  |||||| |   |||||||||||||||||| |    
T  36520220 aatatgaacaccaagatgttgctatgagctagatattgttgccttg-caatataaatttgtaagttggtaaggcaac---atctaactcaaaacaatcct 36520315  T
Q  331 cttaaaataccttgtctttcatcattatgttgcatatatgattccgaagaggttcttgtgaacttgatccaattgacct-------gaaatatgtaagtt 423  Q
    ||| ||||||||| |||||||| ||||||||||| || |||||||||||| ||||||| |||||||||||| |||||||       ||||||| | ||||    
T  36520316 cttgaaataccttatctttcattattatgttgcagatctgattccgaagaagttcttgagaacttgatccagttgacctgctgatcgaaatatatcagtt 36520415  T
Q  424 ggtaggctagctggatcaaacacaaaagtacctcttcgaacatcttcccataagattgatcacttctattattgtgttgttttaag 509  Q
    || ||   ||||| |||||  ||||||| ||||  | ||||| ||||| | |||||| ||||||| | ||||||||||||||||||    
T  36520416 ggcagatcagctgaatcaagtacaaaagcacctgcttgaacaccttcctagaagattcatcacttatgttattgtgttgttttaag 36520501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 257 - 512
Target Start/End: Complemental strand, 8841033 - 8840773
Alignment:
Q  257 agctacatcttgttgctttgacaatataattatgccagttgaaaaggcatcatgatctaactcaaaacaatcatcttaaaataccttgtctttcatcatt 356  Q
    ||||| ||| |||| | ||| |||||||  |||| |||||| ||||||| ||| ||||||||||||||||||  ||| ||| |||||  |||||||||||    
T  8841033 agctagatcgtgtttccttggcaatatacctatgtcagttggaaaggcaacataatctaactcaaaacaatccccttgaaacacctttcctttcatcatt 8840934  T
Q  357 atgttgcatatatgattccgaagaggttcttgtgaacttgatccaattgacctg-----aaatatgtaagttggtaggctagctggatcaaacacaaaag 451  Q
    |||||||| |||||||| | ||||||||||||||||||||| ||| ||||||||       | |||| | |||| | ||||| ||||||||  ||||||     
T  8840933 atgttgcagatatgatttcaaagaggttcttgtgaacttgaaccagttgacctgccgatcgaaatgtcaattggcaagctagttggatcaagtacaaaat 8840834  T
Q  452 tacctcttcgaacatcttcccataagattgatcacttctattattgtgttgttttaagttg 512  Q
     || |||| ||||| ||||  | |||||| ||||||||| |||||||||||||| ||||||    
T  8840833 cacttctttgaacaccttcttagaagattcatcacttctgttattgtgttgtttgaagttg 8840773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 232 - 407
Target Start/End: Original strand, 22416859 - 22417034
Alignment:
Q  232 atatgaacaccgagaggttgttttgagctacatcttgttgctttgacaatataattatgccagttgaaaaggcatcatgatctaactcaaaacaatcatc 331  Q
    ||||||||||| |||||||  | |||| || |||||||||| ||||||||| || |||| ||||||| |||||| | ||||||||||||||||||||  |    
T  22416859 atatgaacaccaagaggtttctatgagttatatcttgttgccttgacaatagaaatatgtcagttgacaaggcaacgtgatctaactcaaaacaatctgc 22416958  T
Q  332 ttaaaataccttgtctttcatcattatgttgcatatatgattccgaagaggttcttgtgaacttgatccaattgac 407  Q
    || ||| |||||   ||| |||||||||||||| || ||||| | |||||||| |||||||||||||||| |||||    
T  22416959 ttgaaacaccttactttttatcattatgttgcaaatctgattacaaagaggttgttgtgaacttgatccacttgac 22417034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 300 - 508
Target Start/End: Original strand, 27690009 - 27690224
Alignment:
Q  300 aaggcatcatgatctaactcaaaacaatcatcttaaaataccttgtctttcatcattatgttgcatatatgattccgaagaggttcttgtgaacttgatc 399  Q
    ||||||||||||||||||| ||||||||| |||| ||| ||||| | ||||||||||||||||||||||| ||| | |||| |||||| |||||||||||    
T  27690009 aaggcatcatgatctaacttaaaacaatcctcttgaaacaccttatatttcatcattatgttgcatatataatttcaaagaagttcttatgaacttgatc 27690108  T
Q  400 caattgacct-------gaaatatgtaagttggtaggctagctggatcaaacacaaaagtacctcttcgaacatcttcccataagattgatcacttctat 492  Q
     | |||||||        |||||||| |||||| |||||||| ||| |||  ||||||  ||||||||||||| ||||| | || ||| ||||||| | |    
T  27690109 tagttgacctacctatcaaaatatgtcagttggcaggctagcaggaacaagtacaaaatcacctcttcgaacaccttccaagaatattcatcacttatgt 27690208  T
Q  493 tattgtgttgttttaa 508  Q
    |||| | |||||||||    
T  27690209 tattttcttgttttaa 27690224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 585 - 864
Target Start/End: Original strand, 36520505 - 36520785
Alignment:
Q  585 cttaaacacattatggtgttgttcagattgtagaatccaaaaatatttagagagtttcatattgtataatctgaaacctcccagactacgtggattgtgg 684  Q
    |||||||||| | ||||||||||  |||| ||||||   |||||||| | | || |||  |||||| ||| |||||||||||||| || ||||| |||||    
T  36520505 cttaaacacaatttggtgttgtttggattttagaatatgaaaatattaatacagattcggattgtaaaatatgaaacctcccagattatgtggagtgtgg 36520604  T
Q  685 catttcacccaaggtttgaacagtttgtcg-gtgtttaatgtatttttgatcggttggagcatgaaaaatgtttcatttcattgtagttacagcgtagga 783  Q
      | |||| |||||||||  | |||||| | |||||||||||| |||||   |||  ||||||| ||||| |||| ||||| |||||||| |   || ||    
T  36520605 tgtgtcacacaaggtttgggcggtttgtggtgtgtttaatgtaattttggctggtccgagcatggaaaatatttcctttcactgtagttataatctatga 36520704  T
Q  784 caggtttaaggctataaatagccttacatgcttcaacaatttcattcattcatcacttctcatcttttcttatgttttctt 864  Q
    | |||||||||||||||||||  || |||| |||||||||||||||||||  ||| |||||||| |||||||  |||||||    
T  36520705 ctggtttaaggctataaatagaattgcatggttcaacaatttcattcatttttcatttctcatcatttcttactttttctt 36520785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 575 - 739
Target Start/End: Original strand, 22407372 - 22407537
Alignment:
Q  575 aaaaatcaaacttaaacacattatggtgttgttcagattgtagaatccaaaaatatttagagagtttcatattgtataatctgaaacctcccagactacg 674  Q
    |||||||||||||||||||| | ||| ||||||| |||| || ||||| ||| | ||  || ||||||| ||| |||||||| ||||||||||||||  |    
T  22407372 aaaaatcaaacttaaacacaatttggagttgttcggattatacaatccgaaattgttctgaaagtttcaaattatataatctaaaacctcccagactgtg 22407471  T
Q  675 tggattgtggcatttcacccaaggtttgaacagtttgtcg-gtgtttaatgtatttttgatcggtt 739  Q
    |||| ||| || ||||||||||| |||  ||||||||| | |||||||||||||||||| ||||||    
T  22407472 tggactgtcgcgtttcacccaagatttagacagtttgtggtgtgtttaatgtatttttggtcggtt 22407537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 715 - 864
Target Start/End: Original strand, 27690436 - 27690584
Alignment:
Q  715 gtgtttaatgtatttttgatcggttggagcatgaaaaatgtttcatttcattgtagttacagcgtaggacaggtttaaggctataaatagccttacatgc 814  Q
    |||||||||| ||||||| ||||||||| |||| |||| | ||| ||| | ||||||||  |  |||||| | ||||||||||||||||  ||| ||| |    
T  27690436 gtgtttaatgcatttttggtcggttggaccatggaaaacgcttcctttgactgtagttatggtctaggactgatttaaggctataaatatgcttgcat-c 27690534  T
Q  815 ttcaacaatttcattcattcatcacttctcatcttttcttatgttttctt 864  Q
    |||||||||||||||||||| ||||||| ||||||||||||  |||||||    
T  27690535 ttcaacaatttcattcattcttcacttcccatcttttcttacattttctt 27690584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 232 - 410
Target Start/End: Original strand, 8242523 - 8242701
Alignment:
Q  232 atatgaacaccgagaggttgttttgagctacatcttgttgctttgacaatataattatgccagttgaaaaggcatcatgatctaactcaaaacaatcatc 331  Q
    ||||||||||  ||| |||| | ||||||| ||| |||||| ||| || ||||  |||| ||||||  || ||| ||  |||||||||||||||||| ||    
T  8242523 atatgaacacgaagaagttgctatgagctagatcctgttgccttggcattatacctatgtcagttggcaatgcagcaatatctaactcaaaacaatcctc 8242622  T
Q  332 ttaaaataccttgtctttcatcattatgttgcatatatgattccgaagaggttcttgtgaacttgatccaattgacctg 410  Q
    || ||| ||||||  |||||||||||||||||| ||  |||||||||||||| | | |||||| |||||  ||||||||    
T  8242623 ttgaaacaccttgcttttcatcattatgttgcagatccgattccgaagaggtccgtatgaactggatccggttgacctg 8242701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 235 - 394
Target Start/End: Original strand, 23344331 - 23344488
Alignment:
Q  235 tgaacaccgagaggttgttttgagctacatcttgttgctttgacaatataattatgccagttgaaaaggcatcatgatctaactcaaaacaatcatctta 334  Q
    |||| ||| |||||||| | ||||||| |||||| ||| ||| | |||||| |||  ||||||  |||||| |||||||||||||  ||||||| ||||     
T  23344331 tgaataccaagaggttgctatgagctagatcttgctgccttggcgatataaatatctcagttggcaaggcaacatgatctaactc--aacaatcctcttg 23344428  T
Q  335 aaataccttgtctttcatcattatgttgcatatatgattccgaagaggttcttgtgaact 394  Q
    ||| ||||| |||| |||| ||||| || | || ||||| |||||||||| || ||||||    
T  23344429 aaacaccttttcttccatcgttatgctggagatctgattacgaagaggttgttatgaact 23344488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 354 - 410
Target Start/End: Complemental strand, 27486257 - 27486201
Alignment:
Q  354 attatgttgcatatatgattccgaagaggttcttgtgaacttgatccaattgacctg 410  Q
    ||||||||||| || ||||| |||||||||| |||||||||||||||| ||||||||    
T  27486257 attatgttgcacatctgattacgaagaggttgttgtgaacttgatccagttgacctg 27486201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 573 - 864
Target Start/End: Complemental strand, 28443381 - 28443090
Alignment:
Q  573 ccaaaaatcaaacttaaacacattatggtgttgttcagattgtagaatccaaaaatatttagagagtttcatattgtataatctgaaacctcccagacta 672  Q
    |||||||| |||| |||||||||| | ||||||| |  ||| || ||||| |||||||||||| || |||   |  ||||||||||||| || |||  ||    
T  28443381 ccaaaaatgaaacctaaacacattcttgtgttgtacgaattatataatccgaaaatatttagacaggttcgactaatataatctgaaacatctcagttta 28443282  T
Q  673 cgtggattgtggcatttcacccaaggtttgaacagtttgtcg-gtgtttaatgtatttttgatcggttggagcatgaaaaatgtttcatttcattgtagt 771  Q
      ||||  ||||| ||| ||| || ||||| ||  ||||| | |||||||||| |||||||   ||||||  ||||||||| || |||||| | ||||||    
T  28443281 tttggacggtggcgtttaaccaaatgtttggacgatttgtggtgtgtttaatgcatttttggatggttgggccatgaaaaacgtatcatttgactgtagt 28443182  T
Q  772 tacagcgtaggacaggtttaaggctataaatagccttacatgcttcaacaatttcattcattcatcacttctcatcttttcttatgttttctt 864  Q
    ||     ||||| ||||||||||||||||||||  || |||  ||||||||  ||||| |||| ||||||| ||||||||||||  |||||||    
T  28443181 tatgatctaggaaaggtttaaggctataaatagatttgcata-ttcaacaaagtcattaattcttcacttcccatcttttcttactttttctt 28443090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 786 - 864
Target Start/End: Complemental strand, 27495225 - 27495148
Alignment:
Q  786 ggtttaaggctataaatagccttacatgcttcaacaatttcattcattcatcacttctcatcttttcttatgttttctt 864  Q
    ||||||||||||||||||| ||| ||| ||||||||||||  ||||||| ||||||| | ||||||||||  |||||||    
T  27495225 ggtttaaggctataaatagactttcat-cttcaacaattttcttcattcttcacttcacctcttttcttacattttctt 27495148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 787 - 844
Target Start/End: Complemental strand, 27485818 - 27485761
Alignment:
Q  787 gtttaaggctataaatagccttacatgcttcaacaatttcattcattcatcacttctc 844  Q
    ||||| |||||||| ||||||| ||||||||||||  ||||||||||| ||| |||||    
T  27485818 gtttatggctataattagccttgcatgcttcaacatattcattcattcttcatttctc 27485761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 307 - 364
Target Start/End: Complemental strand, 27949153 - 27949096
Alignment:
Q  307 catgatctaactcaaaacaatcatcttaaaataccttgtctttcatcattatgttgca 364  Q
    ||||||||||||||||  |||| |||| ||| |||||| ||||| |||||||||||||    
T  27949153 catgatctaactcaaagaaatcctcttgaaacaccttgcctttcttcattatgttgca 27949096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 110; Significance: 6e-55; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 575 - 847
Target Start/End: Original strand, 28639812 - 28640085
Alignment:
Q  575 aaaaatcaaacttaaacacattatggtgttgttcagattgtagaatccaaaaatatttagagagtttcatattgtataatctgaaacctcccagactacg 674  Q
    |||||||||||||||||| | | || |||| ||| ||||||| ||||  |||||||||||||||||||  |||| ||||||||||||||| || |||| |    
T  28639812 aaaaatcaaacttaaacatagtctgatgttattcggattgtataatcttaaaatatttagagagtttcgaattgaataatctgaaacctcacatactagg 28639911  T
Q  675 tggattgtggcatttcacccaaggtttgaacagtttgtcg-gtgtttaatgtatttttgatcggttggagcatgaaaaatgtttcatttcattgtagtta 773  Q
    || |||||||| ||||| | |||||||| |  |||||| | |||||||||| ||||||| ||||||||| |||| |||||||||| ||| | ||||||||    
T  28639912 tgaattgtggcgtttcatctaaggtttggatggtttgtggtgtgtttaatgcatttttggtcggttggaccatgtaaaatgtttcctttgactgtagtta 28640011  T
Q  774 cagcgtaggacaggtttaaggctataaatagccttacatgcttcaacaatttcattcattcatcacttctcatc 847  Q
     ||  |||||  | ||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||    
T  28640012 tagtctaggaatgatttaaggctataaatagccttgcatgcttcaacaatttcatttattcttcacttctcatc 28640085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 232 - 515
Target Start/End: Original strand, 28639464 - 28639754
Alignment:
Q  232 atatgaacaccgagaggttgttttgagctacatcttgttgctttgacaatataattatgccagttgaaaaggcatcatgatctaactcaaaacaatcatc 331  Q
    ||||||||||| |||||||| | ||||||| |||||| ||  |||||||||||| |||| ||||||  | |||| ||| |||||||  ||||||||| ||    
T  28639464 atatgaacaccaagaggttgctatgagctagatcttgctgtcttgacaatataaatatgtcagttggcatggcagcataatctaacgtaaaacaatcctc 28639563  T
Q  332 ttaaaataccttgtctttcatcattatgttgcatatatgattccgaagaggttcttgtgaacttgatccaattgacct-------gaaatatgtaagttg 424  Q
    || ||| ||||||||||||| |||||||||||| || |||||||||||||||||   ||||||||||||| |||||||       ||||||||| || ||    
T  28639564 ttgaaacaccttgtctttcaccattatgttgcagatttgattccgaagaggttcgcatgaacttgatccagttgacctgcaaatagaaatatgtcagctg 28639663  T
Q  425 gtaggctagctggatcaaacacaaaagtacctcttcgaacatcttcccataagattgatcacttctattattgtgttgttttaagttgttt 515  Q
    | | || |||||||||||  ||||||| ||||||| || || ||||| | |||||| ||||||| |||||||||||||||||||| |||||    
T  28639664 gcaagccagctggatcaagtacaaaagcacctctttgagcaccttcctaaaagattcatcacttatattattgtgttgttttaagctgttt 28639754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 232 - 515
Target Start/End: Original strand, 35989542 - 35989832
Alignment:
Q  232 atatgaacaccgagaggttgttttgagctacatcttgttgctttgacaatataattatgccagttgaaaaggcatcatgatctaactcaaaacaatcatc 331  Q
    ||||||||| | |||||||| ||| || || |||||  ||  ||| |||||||| |||| ||||||  ||||||||||||||||||||||||||||| ||    
T  35989542 atatgaacatcaagaggttgctttaagttagatcttactgtcttggcaatataaatatgtcagttggcaaggcatcatgatctaactcaaaacaatcctc 35989641  T
Q  332 ttaaaataccttgtctttcatcattatgttgcatatatgattccgaagaggttcttgtgaacttgatccaattgacct-------gaaatatgtaagttg 424  Q
    || ||| ||||| |||||||||||| ||||||| || ||||||||||| || |||| ||||||||||| | |||||||        |||||||| |||||    
T  35989642 ttgaaacaccttttctttcatcattgtgttgcagatctgattccgaagtggctcttatgaacttgatctagttgacctttcgaactaaatatgttagttg 35989741  T
Q  425 gtaggctagctggatcaaacacaaaagtacctcttcgaacatcttcccataagattgatcacttctattattgtgttgttttaagttgttt 515  Q
    | || | | |||||||||  |||||| ||| |||||||||| ||||||| |||||| ||||||||| ||||| ||||||||||||||||||    
T  35989742 gcagaccaactggatcaagtacaaaattacatcttcgaacaccttcccagaagattcatcacttctgttattatgttgttttaagttgttt 35989832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 546 - 864
Target Start/End: Original strand, 48182206 - 48182524
Alignment:
Q  546 tcttatatcattcgccatgaaaatcctccaaaaatcaaacttaaacacattatggtgttgttcagattgtagaatccaaaaatatttagagagtttcata 645  Q
    |||||| ||||||||||||| || |||| |||||||||||||||||||| | ||| ||||||  ||||  | || ||  ||||||||||| ||||||| |    
T  48182206 tcttatgtcattcgccatgataaccctctaaaaatcaaacttaaacacagtctggggttgttatgattaaacaacccgtaaatatttagacagtttcaga 48182305  T
Q  646 ttgtataatctgaaacctcccagactacgtggattgtggcatttcacccaaggtttgaacagtttgtcg-gtgtttaatgtatttttgatcggttggagc 744  Q
    || | |||| |||||| |||| ||||  ||||| |||| ||||||||||||||||||| | |||||| | |||||||||||||||||| |||||||||||    
T  48182306 ttatgtaatttgaaacatcccggactgtgtggactgtgacatttcacccaaggtttga-ctgtttgtggtgtgtttaatgtatttttggtcggttggagc 48182404  T
Q  745 atgaaaaatgtttcatttcattgtagttacagcgtaggacaggtttaaggctataaatagccttacatgcttcaacaatttcattcattcatcacttctc 844  Q
    ||  |||| |||   ||| |||||| ||||||  ||||| |||||||||| | |||||||  || ||||||||||||||||||||||||| ||| ||  |    
T  48182405 attgaaaacgttatgtttgattgtatttacagtctaggataggtttaaggttttaaatagttttgcatgcttcaacaatttcattcattcttcagtttcc 48182504  T
Q  845 atcttttcttatgttttctt 864  Q
    ||| |||||||  |||||||    
T  48182505 atcatttcttactttttctt 48182524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 300 - 515
Target Start/End: Original strand, 41933055 - 41933276
Alignment:
Q  300 aaggcatcatgatctaactcaaaacaatcatcttaaaataccttgtctttcatcattatgttgcatatatgattccgaagaggttcttgtgaacttgatc 399  Q
    |||||| |||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||    
T  41933055 aaggcaacatgatctaactcaaaacaatcctcttgaaacaccttgtctttcatcattatgttgcatatatgataccgaagaggttcttatgaacttgatc 41933154  T
Q  400 caattgacct-------gaaatatgtaagttggtaggctagctggatcaaacacaaaagtacctcttcgaacatcttcccataagattgatcacttctat 492  Q
    || ||||| |       ||||| ||| |||| |  ||||||||||| |||  ||||||| | ||||||||||| ||||| | |||||  ||||||| | |    
T  41933155 cagttgacatgccgatcgaaatgtgtcagtt-gacggctagctggagcaagtacaaaagcatctcttcgaacaccttcctagaagatccatcacttatgt 41933253  T
Q  493 tattgtgttgttttaagttgttt 515  Q
    |||||||||||||||||||||||    
T  41933254 tattgtgttgttttaagttgttt 41933276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 553 - 757
Target Start/End: Original strand, 35989868 - 35990074
Alignment:
Q  553 tcattcgccatgaaaatcctccaaaaatcaaacttaaacacattatggtgttgttcagattgtagaatccaaaaatattt-agagagtttcatattgtat 651  Q
    ||||||||||| |||| |  |||||||||||||||||||||| | ||||| | ||| ||||||| |||| |||  | ||| | ||||||||  ||||||     
T  35989868 tcattcgccattaaaacctaccaaaaatcaaacttaaacacaatctggtgctattcggattgtaaaatctaaattttttttatagagtttcggattgtaa 35989967  T
Q  652 aatctgaaacctcccagactacgtggattgtggcatttcacccaaggtttgaacagtttgtcg-gtgtttaatgtatttttgatcggttggagcatgaaa 750  Q
    |||| ||||| |||||||||| |||||||||||| |||||||||| ||||| || |||||| | |||||||||| ||||||| ||||||||| |||| ||    
T  35989968 aatccgaaacatcccagactaggtggattgtggcgtttcacccaatgtttggacggtttgtggtgtgtttaatgcatttttggtcggttggaccatggaa 35990067  T
Q  751 aatgttt 757  Q
    || ||||    
T  35990068 aacgttt 35990074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 645 - 851
Target Start/End: Complemental strand, 7134743 - 7134538
Alignment:
Q  645 attgtataatctgaaacctcccagactacgtggattgtggcatttcacccaaggtttgaacagtttgtcggtgtttaatgtatttttgatcggttggagc 744  Q
    |||||| |||||||||||||||||| || ||| | |||||  ||||||||||||||| ||| | |||| |||||||||||| |||||||||| |||||||    
T  7134743 attgtagaatctgaaacctcccagattaggtgaaatgtggtgtttcacccaaggtttaaacggattgt-ggtgtttaatgtgtttttgatcgtttggagc 7134645  T
Q  745 atgaaaaatgtttcatttcattgtagttacagcgtaggacaggtttaaggctataaatagccttacatgcttcaacaatttcattcattcatcacttctc 844  Q
    |   |||| ||||||||| | ||||||||     || ||  |  |||| | |||||||||| || ||||||||||||||||||||||||| ||||||| |    
T  7134644 aatgaaaacgtttcatttaactgtagttatgatctacgaatgtattaaagttataaatagcattgcatgcttcaacaatttcattcattcttcacttccc 7134545  T
Q  845 atctttt 851  Q
    || ||||    
T  7134544 atatttt 7134538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 575 - 864
Target Start/End: Original strand, 41933334 - 41933623
Alignment:
Q  575 aaaaatcaaacttaaacacattatggtgttgttcagattgtagaatccaaaaatatttagagagtttcatattgtataatctgaaacctcccagactacg 674  Q
    |||||| ||||||||||||| | | ||||| ||| |||| || ||||| |||||||| ||| || ||   ||||||||||  |||| ||| || |||| |    
T  41933334 aaaaatgaaacttaaacacagtctcgtgttattcggattatacaatccgaaaatattaagaaaggtttgaattgtataattcgaaaactctcaaactagg 41933433  T
Q  675 tggattgtggcatttcacccaaggtttgaacagtttgtcg-gtgtttaatgtatttttgatcggttggagcatgaaaaatgtttcatttcattgtagtta 773  Q
    ||||||||||| ||||||| |||||||| || |||||| | |||||||||  ||||||| || |||| | |||| |||||||||| ||| | ||| ||||    
T  41933434 tggattgtggcgtttcaccaaaggtttggacggtttgtggtgtgtttaatccatttttggtccgttgaaccatgtaaaatgtttcctttaaatgttgtta 41933533  T
Q  774 cagcgtaggacaggtttaaggctataaatagccttacatgcttcaacaatttcattcattcatcacttctcatcttttcttatgttttctt 864  Q
      |  | |||| | |||| | |||||||||| ||| ||| |||||| |||| ||||||||| ||||||  ||||||||||||  |||||||    
T  41933534 tggtatgggactgatttacgactataaataggcttgcat-cttcaaaaattccattcattcttcactttccatcttttcttactttttctt 41933623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 575 - 758
Target Start/End: Original strand, 41932412 - 41932596
Alignment:
Q  575 aaaaatcaaacttaaacacattatggtgttgttcagattgtagaatccaaaaatatttagagagtttcatattgtataatctgaaacctcccagactacg 674  Q
    |||||| ||||||||||||| | | ||||| ||| |||| || ||||| |||||||| ||| || ||   ||||||||||| |||| ||| || |||| |    
T  41932412 aaaaatgaaacttaaacacagtctcgtgttattcggattatacaatccgaaaatattaagaaaggtttggattgtataatccgaaaactctcaaactagg 41932511  T
Q  675 tggattgtggcatttcacccaaggtttgaacagtttgtcg-gtgtttaatgtatttttgatcggttggagcatgaaaaatgtttc 758  Q
    ||||||||||| ||||||| |||||| | || |||||| | |||||||||| ||||||| || |||| | |||| ||||||||||    
T  41932512 tggattgtggcgtttcaccaaaggttgggacggtttgtggtgtgtttaatgcatttttggtcagttgaaccatgtaaaatgtttc 41932596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 766 - 864
Target Start/End: Complemental strand, 17493539 - 17493441
Alignment:
Q  766 tgtagttacagcgtaggacaggtttaaggctataaatagccttacatgcttcaacaatttcattcattcatcacttctcatcttttcttatgttttctt 864  Q
    ||||||||||| |||||| ||||||| |||||||||||||||| | ||| ||||||  |||||||||||  |||||||||||| ||||| | |||||||    
T  17493539 tgtagttacagtgtaggataggtttatggctataaatagccttgcttgcgtcaacatattcattcattctccacttctcatctattcttttattttctt 17493441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 255 - 465
Target Start/End: Original strand, 21535350 - 21535571
Alignment:
Q  255 tgagctacatcttgttgctttgacaatataattatgccagttgaaaaggcatcatgatctaactcaaaacaatcatcttaaaa----taccttgtctttc 350  Q
    ||||||| |||||| ||| ||| ||||| || |||  || |||  |||||| || ||||||||||||||||||| |||| |||    |||||||||||||    
T  21535350 tgagctagatcttggtgcattggcaataaaaatatctcacttggcaaggcagcaggatctaactcaaaacaatcctcttgaaacacataccttgtctttc 21535449  T
Q  351 atcattatgttgcatatatgattccgaagaggttcttgtgaacttgatccaattgacct-------gaaatatgtaagttggtaggctagctggatcaaa 443  Q
    ||| |||||||||| || ||| |||||| ||||| || |||||| |||||| |||  ||       |||||||||| ||||| | || ||||||||| |     
T  21535450 atcgttatgttgcagatctgaatccgaaaaggtttttatgaactcgatccagttggtctgccaatagaaatatgtatgttggcaagccagctggatcgag 21535549  T
Q  444 cacaaaagtacctcttcgaaca 465  Q
      ||||||||||||||||||||    
T  21535550 ttcaaaagtacctcttcgaaca 21535571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 715 - 855
Target Start/End: Complemental strand, 48892234 - 48892095
Alignment:
Q  715 gtgtttaatgtatttttgatcggttggagcatgaaaaatgtttcatttcattgtagttacagcgtaggacaggtttaaggctataaatagccttacatgc 814  Q
    |||||||||| |||||||  ||||||| ||||| |||| || |||||| | ||||||||     || |||  |||||||| ||||||||| ||   || |    
T  48892234 gtgtttaatgcatttttggacggttggggcatggaaaacgtatcatttgactgtagttatgatctatgacttgtttaaggttataaataggctagtat-c 48892136  T
Q  815 ttcaacaatttcattcattcatcacttctcatcttttctta 855  Q
    ||| |||||||||||||||| ||||||| ||||||||||||    
T  48892135 ttcgacaatttcattcattcttcacttcccatcttttctta 48892095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 356 - 410
Target Start/End: Original strand, 48181907 - 48181961
Alignment:
Q  356 tatgttgcatatatgattccgaagaggttcttgtgaacttgatccaattgacctg 410  Q
    ||||| |||||| ||||| |||||||||| |||||||||||||| | ||||||||    
T  48181907 tatgtcgcatatctgattacgaagaggttgttgtgaacttgatctagttgacctg 48181961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 230 - 323
Target Start/End: Complemental strand, 15247836 - 15247743
Alignment:
Q  230 aaatatgaacaccgagaggttgttttgagctacatcttgttgctttgacaatataattatgccagttgaaaaggcatcatgatctaactcaaaa 323  Q
    ||||||||||||| |||| ||||| |||| || |||||||||  ||||||||| || |||| ||||||  ||| || ||| |||||||| ||||    
T  15247836 aaatatgaacaccaagagattgttatgagttagatcttgttgtcttgacaatagaaatatgtcagttggcaagacaacattatctaactaaaaa 15247743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 3e-38; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 232 - 515
Target Start/End: Complemental strand, 18500955 - 18500667
Alignment:
Q  232 atatgaacaccgagaggttgttttgagctacatcttgttgctttgacaatataattatgccagttgaaaaggcatcatgatctaactcaaaacaatcatc 331  Q
    ||||||||||| ||| |||  | ||||||| |||||| ||| ||| |||||||  |||| ||||||  ||| || |||||||||||||||||||||| ||    
T  18500955 atatgaacaccaagatgtttctatgagctagatcttgatgccttggcaatatacctatgtcagttggcaagacaacatgatctaactcaaaacaatcctc 18500856  T
Q  332 ttaaaataccttgtctttcatcattatgttgcatatatgattccgaagaggttcttgtgaacttgatccaattgacct-------gaaatatgtaagttg 424  Q
    || ||| |||||| ||||||||||||||||||| || | |||||||  |||||| | ||||||||||||| |||||||       ||||||||| |||||    
T  18500855 ttgaaacaccttgcctttcatcattatgttgcagatttaattccga--aggttcctatgaacttgatccagttgacctgccgatcgaaatatgtcagttg 18500758  T
Q  425 gtaggctagctggatcaaacacaaaagtacctcttcgaacatcttcccataagattgatcacttctattattgtgttgttttaagttgttt 515  Q
      |||| |||||||||||  ||||||| ||||||||||||| ||| ||| |||||  ||||||| | ||||||  |||||||||| |||||    
T  18500757 acaggccagctggatcaagtacaaaagaacctcttcgaacacctttccaaaagatccatcacttatgttattgccttgttttaagctgttt 18500667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 645 - 758
Target Start/End: Complemental strand, 42012449 - 42012335
Alignment:
Q  645 attgtataatctgaaacctcccagactacgtggattgtggcatttcacccaaggtttgaacagtttgtcg-gtgtttaatgtatttttgatcggttggag 743  Q
    |||||||||||||||| ||| || |||| |||||||||||| || |||||||||||||||  |||| | | |||||||||||||||||| |  ||||||     
T  42012449 attgtataatctgaaaactctcatactaggtggattgtggcgttgcacccaaggtttgaattgtttatggcgtgtttaatgtatttttggttagttggac 42012350  T
Q  744 catgaaaaatgtttc 758  Q
    |||  ||||||||||    
T  42012349 catagaaaatgtttc 42012335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 232 - 410
Target Start/End: Complemental strand, 18043588 - 18043411
Alignment:
Q  232 atatgaacaccgagaggttgttttgagctacatcttgttgctttgacaatataattatgccagttgaaaaggcatcatgatctaactcaaaacaatcatc 331  Q
    |||||||||  ||||  ||||| ||||||| |||||||||| |||||||||||| |||| ||||||  ||||||  | ||||| ||| ||||||| | ||    
T  18043588 atatgaacattgagatattgttatgagctagatcttgttgccttgacaatataaatatgtcagttggcaaggcaaaaagatcttactaaaaacaa-cctc 18043490  T
Q  332 ttaaaataccttgtctttcatcattatgttgcatatatgattccgaagaggttcttgtgaacttgatccaattgacctg 410  Q
    || |||   ||||||||||||||||||  |||| || | | | |||||||||| || ||||| ||||||| ||| ||||    
T  18043489 ttgaaacgtcttgtctttcatcattattctgcagatctaaatacgaagaggttgttttgaacatgatccatttgccctg 18043411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 232 - 284
Target Start/End: Original strand, 6056157 - 6056209
Alignment:
Q  232 atatgaacaccgagaggttgttttgagctacatcttgttgctttgacaatata 284  Q
    ||||||||||| |||||||| | ||||||| ||||||||||||||||||||||    
T  6056157 atatgaacaccaagaggttgctatgagctagatcttgttgctttgacaatata 6056209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 754 - 846
Target Start/End: Complemental strand, 18043082 - 18042990
Alignment:
Q  754 gtttcatttcattgtagttacagcgtaggacaggtttaaggctataaatagccttacatgcttcaacaatttcattcattcatcacttctcat 846  Q
    ||||| ||| |||||||||||||  || || | ||||| ||||| ||||||||||| |||||||||||  || |||| ||| |||||||||||    
T  18043082 gtttccttttattgtagttacagtctatgataagtttatggctaaaaatagccttatatgcttcaacatatttattccttcttcacttctcat 18042990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 625 - 732
Target Start/End: Complemental strand, 18500556 - 18500448
Alignment:
Q  625 aaatatttagagagtttcatattgtataatctgaaacctcccagactacgtggattgtggcatttcacccaaggtttgaacagtttgtcg-gtgtttaat 723  Q
    ||||||||||| || |||| |||||||||||||||||||| |||||||  ||||  |||   ||||||| |||||||| ||  ||||| | |||||||||    
T  18500556 aaatatttagacaggttcaaattgtataatctgaaacctctcagactagttggacggtgatgtttcaccaaaggtttggacgatttgtggtgtgtttaat 18500457  T
Q  724 gtatttttg 732  Q
    | |||||||    
T  18500456 gcatttttg 18500448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 750 - 852
Target Start/End: Complemental strand, 48374410 - 48374307
Alignment:
Q  750 aaatgtttcatttcattgtagttacagcgtaggacaggtttaaggctataaatagccttacatgcttcaaca-atttcattcattcatcacttctcatct 848  Q
    ||||||||| ||| ||||||||||||   || || |||||||||| || |||||| ||| |||||||||||| | | ||||||||| ||| ||||||||     
T  48374410 aaatgtttcctttgattgtagttacaatctaagataggtttaaggttacaaatagtcttgcatgcttcaacatactccattcattcttcatttctcatcc 48374311  T
Q  849 tttc 852  Q
    ||||    
T  48374310 tttc 48374307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 555 - 594
Target Start/End: Complemental strand, 48374803 - 48374764
Alignment:
Q  555 attcgccatgaaaatcctccaaaaatcaaacttaaacaca 594  Q
    |||| ||||||||| |||||||||||||||||||||||||    
T  48374803 attcaccatgaaaaccctccaaaaatcaaacttaaacaca 48374764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 342 - 399
Target Start/End: Complemental strand, 1852661 - 1852604
Alignment:
Q  342 ttgtctttcatcattatgttgcatatatgattccgaagaggttcttgtgaacttgatc 399  Q
    |||||||||||| ||||||||||||| ||| |||||| ||||| || |||||| ||||    
T  1852661 ttgtctttcatcgttatgttgcatatctgaatccgaaaaggtttttatgaactcgatc 1852604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 300 - 345
Target Start/End: Original strand, 26187815 - 26187860
Alignment:
Q  300 aaggcatcatgatctaactcaaaacaatcatcttaaaataccttgt 345  Q
    |||||| || |||||||||||||||||||||||| ||| |||||||    
T  26187815 aaggcagcaggatctaactcaaaacaatcatcttgaaacaccttgt 26187860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 3e-35; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 232 - 408
Target Start/End: Original strand, 33554668 - 33554844
Alignment:
Q  232 atatgaacaccgagaggttgttttgagctacatcttgttgctttgacaatataattatgccagttgaaaaggcatcatgatctaactcaaaacaatcatc 331  Q
    ||||||||||| || ||||| | ||||||| |||||||| ||| ||||||| || | || ||||||| |||||| || ||| ||| ||||||||||||||    
T  33554668 atatgaacaccaagtggttgctgtgagctagatcttgttacttcgacaatagaaatttgtcagttgacaaggcaacaagatataaatcaaaacaatcatc 33554767  T
Q  332 ttaaaataccttgtctttcatcattatgttgcatatatgattccgaagaggttcttgtgaacttgatccaattgacc 408  Q
    || ||| || ||||||||||||||||||||||| || ||||| ||||||| || |||||||||||||||| ||||||    
T  33554768 ttgaaacacattgtctttcatcattatgttgcagatttgattacgaagagtttgttgtgaacttgatccagttgacc 33554844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 630 - 855
Target Start/End: Original strand, 33555062 - 33555288
Alignment:
Q  630 tttagagagtttcatattgtataatctgaaacctcccagactacgtggattgtggcatttcacccaaggtttgaacagtttgtcg-gtgtttaatgtatt 728  Q
    |||||| ||||||| ||| ||||||| |||||||||||||||  |||||||||||| |  |||||||||||||||| |||||| | || ||||||| |||    
T  33555062 tttagaaagtttcagattatataatccgaaacctcccagactgtgtggattgtggcgtaacacccaaggtttgaacggtttgtggtgtatttaatgcatt 33555161  T
Q  729 tttgatcggttggagcatgaaaaatgtttcatttcattgtagttacagcgtaggacaggtttaaggctataaatagccttacatgcttcaacaatttcat 828  Q
    |||| |   ||   ||||   |||  | || ||| | |||||||||||  ||||| | |||||  ||||||||||||||| |||| |||||||  |||||    
T  33555162 tttggtttatttatgcattgtaaacatatcctttgactgtagttacagtctaggatatgtttatagctataaatagccttgcatggttcaacatattcat 33555261  T
Q  829 tcattcatcacttctcatcttttctta 855  Q
    |||||| ||| |||||||  |||||||    
T  33555262 tcattcttcatttctcatactttctta 33555288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 300 - 401
Target Start/End: Complemental strand, 28547382 - 28547281
Alignment:
Q  300 aaggcatcatgatctaactcaaaacaatcatcttaaaataccttgtctttcatcattatgttgcatatatgattccgaagaggttcttgtgaacttgatc 399  Q
    |||||| || ||||||||| ||||||||| |||| ||| ||||| |||||||||||||||||||| || ||||||||||  |||| || |||||| ||||    
T  28547382 aaggcaacaagatctaactaaaaacaatcctcttgaaacaccttatctttcatcattatgttgcagatctgattccgaaatggtttttatgaactcgatc 28547283  T
Q  400 ca 401  Q
    ||    
T  28547282 ca 28547281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 292 - 364
Target Start/End: Complemental strand, 20819090 - 20819014
Alignment:
Q  292 cagttgaaaaggcatcatgatctaactcaaaacaatcatcttaaa----ataccttgtctttcatcattatgttgca 364  Q
    |||||| |||| || |||||||||||||||||||||| |||| ||    ||||| ||||||||||| ||||||||||    
T  20819090 cagttggaaagacaacatgatctaactcaaaacaatcctcttgaaacacataccctgtctttcatcgttatgttgca 20819014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 1e-34; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 561 - 830
Target Start/End: Complemental strand, 52598521 - 52598253
Alignment:
Q  561 catgaaaatcctccaaaaatcaaacttaaacacattatggtgttgttcagattgtagaatccaaaaatatttagagagtttcatattgtataatctgaaa 660  Q
    |||||||| ||||||||||||||||||||| | | | ||||| ||||| |||| || |||||||||||||||  | ||||||| ||| ||| ||| ||||    
T  52598521 catgaaaaccctccaaaaatcaaacttaaaaagagtctggtggtgttcggattatacaatccaaaaatattt--atagtttcagattatatgatcggaaa 52598424  T
Q  661 cctcccagactacgtggattgtggcatttcacccaaggtttgaacagtttgtcg-gtgtttaatgtatttttgatcggttggagcatgaaaaatgtttca 759  Q
    ||| |||||||  |||||||||||| |||||||  ||||||| |||||| || | ||||| ||| |||||||| ||||||||||| |   ||| |||||     
T  52598423 ccttccagactgtgtggattgtggcgtttcaccagaggtttggacagttcgtggtgtgttcaatatatttttggtcggttggagctttgtaaacgtttct 52598324  T
Q  760 tttcattgtagttacagcgtaggacaggtttaaggctataaatagccttacatgcttcaacaatttcattc 830  Q
    ||| | ||||||||||   ||||| ||||||| | ||||| |||| ||| ||||||||||||| |||||||    
T  52598323 tttgactgtagttacaatctaggataggtttatgactatacatagtcttgcatgcttcaacaaattcattc 52598253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 232 - 409
Target Start/End: Original strand, 16741317 - 16741494
Alignment:
Q  232 atatgaacaccgagaggttgttttgagctacatcttgttgctttgacaatataattatgccagttgaaaaggcatcatgatctaactcaaaacaatcatc 331  Q
    ||||||||| | |||||||||| ||||||| || ||||||| ||| || || || |||| |||||   |||||| |||||||||||||||||||||| ||    
T  16741317 atatgaacatcaagaggttgttatgagctagattttgttgccttggcattagaaatatgtcagtttgcaaggcagcatgatctaactcaaaacaatcctc 16741416  T
Q  332 ttaaaataccttgtctttcatcattatgttgcatatatgattccgaagaggttcttgtgaacttgatccaattgacct 409  Q
    || |||||  |||||||| |||||||||||||| || | ||  |||||||||| ||| |||||||||||| |||||||    
T  16741417 ttgaaatatattgtcttttatcattatgttgcagatcttatcacgaagaggttgttgcgaacttgatccagttgacct 16741494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 233 - 406
Target Start/End: Original strand, 37397466 - 37397640
Alignment:
Q  233 tatgaacaccgagaggttgttttgagctacatcttgttgctttgacaatataattatgccagttgaaaaggcatcatgatctaactcaaaacaatcatct 332  Q
    |||||||||| ||| |||||| ||||| | |||||||||| |||  |||| || |||| ||||||  ||| | ||||||||||||||||||||||  |||    
T  37397466 tatgaacaccaagatgttgttatgagccagatcttgttgccttggaaatagaaatatgtcagttggcaagacgtcatgatctaactcaaaacaattctct 37397565  T
Q  333 taaaataccttg-tctttcatcattatgttgcatatatgattccgaagaggttcttgtgaacttgatccaattga 406  Q
    ||||| |||||| | ||||||||||||| ||||||| |||||  |||||| || || ||||||||||||| ||||    
T  37397566 taaaacaccttgctttttcatcattatgctgcatatctgattatgaagagtttgttttgaacttgatccagttga 37397640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 232 - 506
Target Start/End: Complemental strand, 52598840 - 52598564
Alignment:
Q  232 atatgaacaccgagaggttgttttgagctacatcttgttgctttgacaatataattatgccagttgaaaaggcatcatgatctaactcaaaacaatcatc 331  Q
    ||||||||||| |||||||| | ||||||| |||||| ||| ||| |||||||| |||| ||||||  |||||| |  ||||||||||||  |     |     
T  52598840 atatgaacaccaagaggttgctctgagctagatcttgctgccttggcaatataaatatgtcagttggcaaggcaacgcgatctaactcaattc-----tt 52598746  T
Q  332 ttaaaataccttgtctttcatcattatgttgcatatatgattccgaagaggttcttgtgaacttgatccaattgacc-------tgaaatatgtaagttg 424  Q
    |||||| ||||||  |||||||||| ||||||| || ||||||||||||||||||| ||||||| || || |||  |       |||||||||| |||||    
T  52598745 ttaaaacaccttgcatttcatcattttgttgcagatctgattccgaagaggttcttatgaacttaattcagttggtctgtcgattgaaatatgttagttg 52598646  T
Q  425 gtaggctagctggatcaaacacaaaagtacctcttcgaacatcttcccataagattgatcacttctattattgtgttgtttt 506  Q
    |||||  || ||||||||  ||||||  |||||||| ||||  |||||| ||| || ||||||| | ||||| |||||||||    
T  52598645 gtaggtcagttggatcaagtacaaaaacacctcttcaaacacattcccaaaagtttcatcacttatgttattatgttgtttt 52598564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 553 - 712
Target Start/End: Complemental strand, 30452690 - 30452531
Alignment:
Q  553 tcattcgccatgaaaatcctccaaaaatcaaacttaaacacattatggtgttgttcagattgtagaatccaaaaatatttagagagtttcatattgtata 652  Q
    |||||| ||||||||| ||||||||||||||||||||||||| || |     ||||||||| || ||||||||||| ||  |||||||| | ||| ||||    
T  30452690 tcattcaccatgaaaaccctccaaaaatcaaacttaaacacaatacgagacagttcagattatacaatccaaaaatgttacgagagttttagattatata 30452591  T
Q  653 atctgaaacctcccagactacgtggattgtggcatttcacccaaggtttgaacagtttgt 712  Q
    ||||||| ||||||| |||  |||||   ||| ||| ||| || |||||| |||||||||    
T  30452590 atctgaaccctcccaaactctgtggaccatggaattacactcatggtttggacagtttgt 30452531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 310 - 410
Target Start/End: Original strand, 1651894 - 1651994
Alignment:
Q  310 gatctaactcaaaacaatcatcttaaaataccttgtctttcatcattatgttgcatatatgattccgaagaggttcttgtgaacttgatccaattgacct 409  Q
    ||||||||||||||||||| |||| ||| || ||||||||||||||  ||||||  || | ||| |||||||||| |||||| ||||| ||| |||||||    
T  1651894 gatctaactcaaaacaatcctcttgaaacacattgtctttcatcatggtgttgcccatctaattacgaagaggttgttgtgaccttgaaccatttgacct 1651993  T
Q  410 g 410  Q
    |    
T  1651994 g 1651994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 715 - 864
Target Start/End: Complemental strand, 42247312 - 42247163
Alignment:
Q  715 gtgtttaatgtatttttgatcggttggagcat-gaaaaatgtttcatttcattgtagttacagcgtaggacaggtttaaggctataaatagccttacatg 813  Q
    |||||||||  ||||||| || |||| ||||| |||||| ||||| ||| | | || |||||   ||||| ||||||| | ||||||||||| || ||||    
T  42247312 gtgtttaatacatttttggtcagttgaagcattgaaaaaagtttcctttgactataattacaatctaggataggtttatgactataaatagcttt-catg 42247214  T
Q  814 cttcaacaatttcattcattcatcacttctcatcttttcttatgttttctt 864  Q
    ||||||||||||||||||||| |||| || |||| |||||||  |||||||    
T  42247213 cttcaacaatttcattcattcttcacctcccatcatttcttactttttctt 42247163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 787 - 864
Target Start/End: Complemental strand, 56084175 - 56084099
Alignment:
Q  787 gtttaaggctataaatagccttacatgcttcaacaatttcattcattcatcacttctcatcttttcttatgttttctt 864  Q
    |||||||||||||||||  ||| |||  |||||||| ||||||||||| ||||||||||||||||||||  |||||||    
T  56084175 gtttaaggctataaatatgcttgcata-ttcaacaaattcattcattcttcacttctcatcttttcttactttttctt 56084099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 235 - 407
Target Start/End: Complemental strand, 30453013 - 30452841
Alignment:
Q  235 tgaacaccgagaggttgttttgagctacatcttgttgctttgacaatataattatgccagttgaaaaggcatcatgatctaactcaaaacaatcatctta 334  Q
    |||||||| ||| ||| || ||||||| ||| || ||||| | || || || |||| ||||||  ||| || | |||||||||||||||||||| ||||     
T  30453013 tgaacaccaagatgttattatgagctagatcctgctgcttcggcagtagaaatatgtcagttggcaagacaacgtgatctaactcaaaacaatcctcttg 30452914  T
Q  335 aaataccttgtctttcatcattatgttgcatatatgattccgaagaggttcttgtgaacttgatccaattgac 407  Q
    ||| | |||| || ||||||||||| |||| || ||| | | |||||||| |||||||| ||| ||| |||||    
T  30452913 aaagatcttgcctctcatcattatgctgcaaatctgactactaagaggttgttgtgaacctgacccagttgac 30452841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 766 - 846
Target Start/End: Complemental strand, 50867487 - 50867407
Alignment:
Q  766 tgtagttacagcgtaggacaggtttaaggctataaatagccttacatgcttcaacaatttcattcattcatcacttctcat 846  Q
    ||||||||||   |||||| | |||| |||||||||||||||| ||| |||||||  |||||||||||| |||||| ||||    
T  50867487 tgtagttacaatctaggaccgttttatggctataaatagccttgcatccttcaacgttttcattcattcttcacttttcat 50867407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 796 - 847
Target Start/End: Complemental strand, 19509208 - 19509157
Alignment:
Q  796 tataaatagccttacatgcttcaacaatttcattcattcatcacttctcatc 847  Q
    ||||||||| ||| ||| ||||||||||||||||||||| |||||| |||||    
T  19509208 tataaatagtcttgcatacttcaacaatttcattcattcttcacttgtcatc 19509157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 796 - 847
Target Start/End: Complemental strand, 20182868 - 20182817
Alignment:
Q  796 tataaatagccttacatgcttcaacaatttcattcattcatcacttctcatc 847  Q
    ||||||||||||| |||||||||||| |||||| | ||| ||||||||||||    
T  20182868 tataaatagccttgcatgcttcaacattttcatcccttcttcacttctcatc 20182817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 560 - 594
Target Start/End: Original strand, 16741589 - 16741623
Alignment:
Q  560 ccatgaaaatcctccaaaaatcaaacttaaacaca 594  Q
    |||| ||||||||||||||||||||||||||||||    
T  16741589 ccataaaaatcctccaaaaatcaaacttaaacaca 16741623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 787 - 864
Target Start/End: Complemental strand, 40602804 - 40602728
Alignment:
Q  787 gtttaaggctataaatagccttacatgcttcaacaatttcattcattcatcacttctcatcttttcttatgttttctt 864  Q
    |||||| ||||||||||| ||||||| |||||||||  || ||||||| ||||||| | ||||||||||  |||||||    
T  40602804 gtttaatgctataaataggcttacat-cttcaacaaactccttcattcttcacttcacctcttttcttactttttctt 40602728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 2e-33; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 555 - 864
Target Start/End: Complemental strand, 815876 - 815562
Alignment:
Q  555 attcgccatgaaaatcctccaaaaatcaaacttaaacacattatggtgttgttcagattgtagaatccaaaaatatttagagagtttcatattgtataat 654  Q
    |||||||||||||| |  |||||||| ||||||||||| | | ||||| | |||  ||| || |||||||||||||||||| || ||   ||||||||||    
T  815876 attcgccatgaaaacctaccaaaaatgaaacttaaacaaagtctggtgctattcgaattatacaatccaaaaatatttagacaggtttggattgtataat 815777  T
Q  655 ctgaaacctcccagactacgtggattgtggcatttcacccaaggtttgaacagtttgtcg-gtgtttaatgtatttttgatcggttggagcatgaaaaat 753  Q
    |  ||| | | | ||||| ||||| | || | ||||||| |||||||  || |||||| | |||||||||| ||||||| ||||||||| |||||||||     
T  815776 ccaaaaaccctcggactaggtggaatatgacgtttcaccaaaggtttagacggtttgtggtgtgtttaatgcatttttggtcggttggaccatgaaaaac 815677  T
Q  754 gtttcatttcattgtagttacagcgtaggacaggtttaaggctataaatagccttacatgcttcaacaatttcattcattca----tcacttctcatctt 849  Q
    ||||| ||| | ||||||||  |  ||||||  ||||||| |||||||||| ||| ||||| ||||||||||||||||||||    ||| ||||||||||    
T  815676 gtttcctttgaatgtagttatggtctaggacttgtttaagactataaataggcttgcatgcatcaacaatttcattcattcattcttcaattctcatctt 815577  T
Q  850 ttcttatgttttctt 864  Q
    ||||||  |||||||    
T  815576 ttcttactttttctt 815562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 345 - 515
Target Start/End: Complemental strand, 816095 - 815919
Alignment:
Q  345 tctttcatcattatgttgcatatatgattccgaagaggttcttgtgaacttgatccaattgacctg-------aaatatgtaagttggtaggctagctgg 437  Q
    |||||||||||||||||||| |   |||| |||||| |||||| |||| |||||||| ||||||||       |||||||| |||||  ||| |||||||    
T  816095 tctttcatcattatgttgcagaccagatttcgaagatgttcttatgaatttgatccagttgacctgccgatcgaaatatgtcagttgacaggttagctgg 815996  T
Q  438 atcaaacacaaaagtacctcttcgaacatcttcccataagattgatcacttctattattgtgttgttttaagttgttt 515  Q
    |||||| ||||||| ||| |||| |||| || |||| |||||| ||||||| | ||||||||||||||||||||||||    
T  815995 atcaaatacaaaagcaccgcttcaaacacct-cccagaagattcatcacttatgttattgtgttgttttaagttgttt 815919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 255 - 401
Target Start/End: Original strand, 21484805 - 21484951
Alignment:
Q  255 tgagctacatcttgttgctttgacaatataattatgccagttgaaaaggcatcatgatctaactcaaaacaatcatcttaaaataccttgtctttcatca 354  Q
    ||||||| |||||| ||| ||  ||||| || |||  ||||||| |||||| || ||||||||||||||||||| |||| ||| |||||||||||||||     
T  21484805 tgagctagatcttggtgccttagcaatagaaatatctcagttgacaaggcagcaggatctaactcaaaacaatcctcttgaaacaccttgtctttcatcg 21484904  T
Q  355 ttatgttgcatatatgattccgaagaggttcttgtgaacttgatcca 401  Q
    ||||||||||||| ||| |||||| ||||| || ||| || ||||||    
T  21484905 ttatgttgcatatctgaatccgaaaaggtttttatgagctcgatcca 21484951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 313 - 442
Target Start/End: Complemental strand, 41254849 - 41254713
Alignment:
Q  313 ctaactcaaaacaatcatcttaaaataccttgtctttcatcattatgttgcatatatgattccgaagaggttcttgtgaacttgatccaattgacct--- 409  Q
    |||||||||||||||| | || ||  ||||||||||||||||||||  ||||||||||||| |||||| ||| || |||| |||||  | ||||| |       
T  41254849 ctaactcaaaacaatccttttgaagcaccttgtctttcatcattattctgcatatatgattacgaagatgttgttttgaaattgatttagttgacttgcc 41254750  T
Q  410 ----gaaatatgtaagttggtaggctagctggatcaa 442  Q
        ||||||||| ||||||||||||||||| |||||    
T  41254749 gatagaaatatgttagttggtaggctagctgaatcaa 41254713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 311 - 399
Target Start/End: Original strand, 37127522 - 37127610
Alignment:
Q  311 atctaactcaaaacaatcatcttaaaataccttgtctttcatcattatgttgcatatatgattccgaagaggttcttgtgaacttgatc 399  Q
    |||||||||||||||||| |||| ||| ||||||||||||||| ||||||| |  || | |||  ||||||||| || |||||||||||    
T  37127522 atctaactcaaaacaatcctcttgaaacaccttgtctttcatcgttatgttacggatctaattttgaagaggtttttatgaacttgatc 37127610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 1e-31; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 571 - 864
Target Start/End: Original strand, 32124306 - 32124598
Alignment:
Q  571 ctccaaaaatcaaacttaaacacattatggtgttgttcagattgtagaatccaaaaatatttagagagtttcatattgtataatctgaaacctcccagac 670  Q
    |||||||||||||||||||||||| | |||||||||||||||| || ||| | |||||||||||||   || | ||| ||||||||||||||||||||||    
T  32124306 ctccaaaaatcaaacttaaacacagtctggtgttgttcagattatataattcgaaaatatttagagcagttgagattatataatctgaaacctcccagac 32124405  T
Q  671 tacgtggattgtggcatttcacccaaggtttgaacagtttgtcg-gtgtttaatgtatttttgatcggttggagcatgaaaaatgtttcatttcattgta 769  Q
    || ||| | | || | ||||||||||| |||| || |||| | | || ||||||| ||||||| ||||||||| ||||| |||  |||||||| | | ||    
T  32124406 tatgtgcactatgacgtttcacccaagatttggacggttttttgtgtctttaatgcatttttggtcggttggaccatgacaaacctttcatttgactata 32124505  T
Q  770 gttacagcgtaggacaggtttaaggctataaatagccttacatgcttcaacaatttcattcattcatcacttctcatcttttcttatgttttctt 864  Q
    ||||  |  |  ||| |||||||| || ||||||| ||| ||| | |||| || ||||||||||| ||||||| ||||||||||||  |||||||    
T  32124506 gtta-tgatttagactggtttaagactttaaataggcttgcat-cgtcaaaaaattcattcattcttcacttcccatcttttcttactttttctt 32124598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 300 - 410
Target Start/End: Original strand, 32124028 - 32124138
Alignment:
Q  300 aaggcatcatgatctaactcaaaacaatcatcttaaaataccttgtctttcatcattatgttgcatatatgattccgaagaggttcttgtgaacttgatc 399  Q
    |||||| || ||||||||||||||||||| | || ||||||||||||||||| |||||||||||| || | ||| | |||||||||||  |||| |||||    
T  32124028 aaggcagcaagatctaactcaaaacaatcctattgaaataccttgtctttcaccattatgttgcaaatctaatttcaaagaggttcttaagaacctgatc 32124127  T
Q  400 caattgacctg 410  Q
    || ||||||||    
T  32124128 cagttgacctg 32124138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 663 - 847
Target Start/End: Original strand, 17865019 - 17865203
Alignment:
Q  663 tcccagactacgtggattgtggcatttcacccaaggtttgaacagtttgtcg-gtgtttaatgtatttttgatcggttggagcatgaaaaatgtttcatt 761  Q
    |||||||||| || || |||||| ||||||||||||||||||| |||||| | |||||||||  ||||||| |  |||| |  ||| |||| ||||| ||    
T  17865019 tcccagactaggttgactgtggcttttcacccaaggtttgaacggtttgtggcgtgtttaattcatttttggt-tgttgaactatggaaaacgtttcctt 17865117  T
Q  762 tcattgtagttacagcgtaggacaggtttaaggctataaatagccttacatgcttcaacaatttcattcattcatcacttctcatc 847  Q
    | |||||||||| ||  || |||  ||||||| |||||||||||||| |||  ||||||||||| |||||||| | ||||| ||||    
T  17865118 tgattgtagttatagtctatgactagtttaagactataaatagccttgcattgttcaacaattttattcattctttacttcccatc 17865203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 67; Significance: 3e-29; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 244 - 410
Target Start/End: Original strand, 16827 - 16993
Alignment:
Q  244 agaggttgttttgagctacatcttgttgctttgacaatataattatgccagttgaaaaggcatcatgatctaactcaaaacaatcatcttaaaatacctt 343  Q
    |||||||| | ||||||| |||||| ||| ||| | |||||| |||  | ||||  |||||| || ||||||||||||||||||| |||| ||| |||||    
T  16827 agaggttgctatgagctagatcttggtgccttggcgatataaatatctcggttggcaaggcagcaagatctaactcaaaacaatcctcttgaaacacctt 16926  T
Q  344 gtctttcatcattatgttgcatatatgattccgaagaggttcttgtgaacttgatccaattgacctg 410  Q
    |||||||||| ||||| |||| ||||||||||||| ||||| || ||||||||||||| ||||||||    
T  16927 gtctttcatcgttatgctgcagatatgattccgaaaaggtttttatgaacttgatccagttgacctg 16993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 51; Significance: 1e-19; HSPs: 2)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 300 - 378
Target Start/End: Complemental strand, 65328 - 65250
Alignment:
Q  300 aaggcatcatgatctaactcaaaacaatcatcttaaaataccttgtctttcatcattatgttgcatatatgattccgaa 378  Q
    |||||||||||||||||||||||||||||||||| ||| || || ||||||||| ||||||||||||| ||| ||||||    
T  65328 aaggcatcatgatctaactcaaaacaatcatcttgaaacacattttctttcatcgttatgttgcatatgtgaatccgaa 65250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 300 - 401
Target Start/End: Complemental strand, 52370 - 52269
Alignment:
Q  300 aaggcatcatgatctaactcaaaacaatcatcttaaaataccttgtctttcatcattatgttgcatatatgattccgaagaggttcttgtgaacttgatc 399  Q
    |||||| |||||||||||||||||||||| |||| ||| || || ||||||||| |||||||||| || ||| ||||||  |||  || |||||||||||    
T  52370 aaggcagcatgatctaactcaaaacaatcctcttgaaacacattttctttcatcgttatgttgcagatgtgaatccgaattggtgtttttgaacttgatc 52271  T
Q  400 ca 401  Q
    ||    
T  52270 ca 52269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 300 - 367
Target Start/End: Original strand, 18618 - 18685
Alignment:
Q  300 aaggcatcatgatctaactcaaaacaatcatcttaaaataccttgtctttcatcattatgttgcatat 367  Q
    |||||| || ||||||||||||||||||| |||| ||| ||||||||||||||| |||||||||||||    
T  18618 aaggcagcaagatctaactcaaaacaatcctcttgaaacaccttgtctttcatcgttatgttgcatat 18685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 300 - 401
Target Start/End: Original strand, 426840 - 426941
Alignment:
Q  300 aaggcatcatgatctaactcaaaacaatcatcttaaaataccttgtctttcatcattatgttgcatatatgattccgaagaggttcttgtgaacttgatc 399  Q
    |||||| |||||||||||||||||||||| |||| ||| |||||  |||||||| |||||||||| || ||| | |||| ||||| || |||||| ||||    
T  426840 aaggcaacatgatctaactcaaaacaatcctcttcaaacaccttccctttcatcgttatgttgcaaatctgaattcgaaaaggtttttatgaactcgatc 426939  T
Q  400 ca 401  Q
    ||    
T  426940 ca 426941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 790 - 851
Target Start/End: Original strand, 427261 - 427321
Alignment:
Q  790 taaggctataaatagccttacatgcttcaacaatttcattcattcatcacttctcatctttt 851  Q
    ||||||||||||||| ||| ||| ||||||||||||| ||||||| ||||||| | ||||||    
T  427261 taaggctataaataggcttgcat-cttcaacaatttccttcattcttcacttcacctctttt 427321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 310 - 394
Target Start/End: Original strand, 7762 - 7846
Alignment:
Q  310 gatctaactcaaaacaatcatcttaaaataccttgtctttcatcattatgttgcatatatgattccgaagaggttcttgtgaact 394  Q
    ||||||||||||||||||| |||| ||| || |||||||||||| ||| ||||||||| ||| ||| || ||||| || ||||||    
T  7762 gatctaactcaaaacaatcctcttgaaacacattgtctttcatcgttaagttgcatatctgaatccaaaaaggtttttatgaact 7846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0376 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0376
Description:

Target: scaffold0376; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 766 - 836
Target Start/End: Complemental strand, 7274 - 7204
Alignment:
Q  766 tgtagttacagcgtaggacaggtttaaggctataaatagccttacatgcttcaacaatttcattcattcat 836  Q
    ||||||||||   ||||| || |||| |||||||||||||||| ||||||||||||  |||||||||||||    
T  7274 tgtagttacaatctaggatagttttatggctataaatagccttgcatgcttcaacatattcattcattcat 7204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University