View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11191_high_10 (Length: 294)
Name: NF11191_high_10
Description: NF11191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11191_high_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 22)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 9317871 - 9318149
Alignment:
| Q |
1 |
tgtggccataaagatgttgggtaactctaagggtaatgggcaagactttattaatgaagttgcaaccataggaagaatacaccatgcaaatgtggttaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9317871 |
tgtggccataaagatgttgggtaactctaagggtaatgggcaagactttattaatgaagttgcaaccataggaagaatacaccatgcaaatgtggttaga |
9317970 |
T |
|
| Q |
101 |
cttattggtttttgttttgagagatcaaaacgtgcacttgtttatgaattcatgcccaacggctctcttgataaatacatttcctctaaagatgatgtta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9317971 |
cttattggtttttgttttgagagatcaaaacgtgcacttgtttatgaattcatgcccaacggctctcttgataaatacatttcctctaaagatgatgtta |
9318070 |
T |
|
| Q |
201 |
ttgatctaacttgcaagaaaatgtatgagatatctcttggagtggctcgtggaattgcttatttgcatcaaggatgtga |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
9318071 |
ttgatctaacttgcaagaaaatgtatgagatatctcttggagtggctcgtggaattgcttatttgcatgaaggatgtga |
9318149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 9320431 - 9320153
Alignment:
| Q |
1 |
tgtggccataaagatgttgggtaactctaagggtaatgggcaagactttattaatgaagttgcaaccataggaagaatacaccatgcaaatgtggttaga |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| ||||| || |||| |||||| |||||||||||||||||||| || | ||||||||| || |
|
|
| T |
9320431 |
tgtggccataaagatgttgggtaaatctaagggtaatggacaagatttcattagtgaagtcgcaaccataggaagaatacatcacaccaatgtggttcga |
9320332 |
T |
|
| Q |
101 |
cttattggtttttgttttgagagatcaaaacgtgcacttgtttatgaattcatgcccaacggctctcttgataaatacatttcctctaaagatgatgtta |
200 |
Q |
| |
|
|||||||| |||||| |||| ||||||| ||||| |||||||||||||||||| |||| ||||||||||||||||| |||||||||| ||| ||| || |
|
|
| T |
9320331 |
cttattgggttttgtgttgaaggatcaaagcgtgctcttgtttatgaattcatgtccaatggctctcttgataaatatatttcctctagagaggatacta |
9320232 |
T |
|
| Q |
201 |
ttgatctaacttgcaagaaaatgtatgagatatctcttggagtggctcgtggaattgcttatttgcatcaaggatgtga |
279 |
Q |
| |
|
| ||||| || ||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||| |
|
|
| T |
9320231 |
tctctctaaattatcagaaaatgtatgagatatctcttggagtggctcgtggtatggcttatttacatcaaggatgtga |
9320153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 9350748 - 9350470
Alignment:
| Q |
1 |
tgtggccataaagatgttgggtaactctaagggtaatgggcaagactttattaatgaagttgcaaccataggaagaatacaccatgcaaatgtggttaga |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| ||||| || |||| |||||| |||||||||||||||||||| || | ||||||||| || |
|
|
| T |
9350748 |
tgtggccataaagatgttgggtaaatctaagggtaatggacaagatttcattagtgaagtcgcaaccataggaagaatacatcacaccaatgtggtttga |
9350649 |
T |
|
| Q |
101 |
cttattggtttttgttttgagagatcaaaacgtgcacttgtttatgaattcatgcccaacggctctcttgataaatacatttcctctaaagatgatgtta |
200 |
Q |
| |
|
|||||||| |||||| |||| ||||||| ||||| |||||||||||||||||| |||| ||||||||||||||||| |||||||||| ||| ||| || |
|
|
| T |
9350648 |
cttattgggttttgtgttgaaggatcaaagcgtgctcttgtttatgaattcatgtccaatggctctcttgataaatatatttcctctagagaggatacta |
9350549 |
T |
|
| Q |
201 |
ttgatctaacttgcaagaaaatgtatgagatatctcttggagtggctcgtggaattgcttatttgcatcaaggatgtga |
279 |
Q |
| |
|
| ||||| || |||||||||||||||||||| |||||||||||||||| || |||||||| |||||||||||||| |
|
|
| T |
9350548 |
tctctctaagttatcagaaaatgtatgagatatctgttggagtggctcgtggtatggcttatttacatcaaggatgtga |
9350470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 5 - 276
Target Start/End: Original strand, 9254613 - 9254884
Alignment:
| Q |
5 |
gccataaagatgttgggtaactctaagggtaatgggcaagactttattaatgaagttgcaaccataggaagaatacaccatgcaaatgtggttagactta |
104 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||| || || || |||| |||||| |||||||||||||||||||| || | ||||||| | |||||| |
|
|
| T |
9254613 |
gccataaagatgttggttaaatctaagggtaatggacatgatttcattagtgaagtcgcaaccataggaagaatacatcacaccaatgtggctcgactta |
9254712 |
T |
|
| Q |
105 |
ttggtttttgttttgagagatcaaaacgtgcacttgtttatgaattcatgcccaacggctctcttgataaatacatttcctctaaagatgatgttattga |
204 |
Q |
| |
|
|||| |||||| ||||| ||||||| ||||| |||||||||||||||||| |||| || |||||||||||||| |||||||||| ||| ||| ||| |
|
|
| T |
9254713 |
ttgggttttgtgttgagggatcaaagcgtgctcttgtttatgaattcatgtccaatggttctcttgataaatatatttcctctagagaggatactatctc |
9254812 |
T |
|
| Q |
205 |
tctaacttgcaagaaaatgtatgagatatctcttggagtggctcgtggaattgcttatttgcatcaaggatg |
276 |
Q |
| |
|
||||| || |||||||||| |||||||||||||||||||||| ||| ||||||||||| ||||||||||| |
|
|
| T |
9254813 |
tctaagttatcagaaaatgtacgagatatctcttggagtggctcatggtattgcttatttacatcaaggatg |
9254884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 35 - 279
Target Start/End: Complemental strand, 8921191 - 8920947
Alignment:
| Q |
35 |
aatgggcaagactttattaatgaagttgcaaccataggaagaatacaccatgcaaatgtggttagacttattggtttttgttttgagagatcaaaacgtg |
134 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||| |||||| || || |||||||| ||||| |||| |||||| ||||| |||||||||||| |
|
|
| T |
8921191 |
aatgggcaagatttcattaatgaagttgcaaccataggaaaaatacatcacgccaatgtggtgcgacttgttggattttgtgttgagggatcaaaacgtg |
8921092 |
T |
|
| Q |
135 |
cacttgtttatgaattcatgcccaacggctctcttgataaatacatttcctctaaagatgatgttattgatctaacttgcaagaaaatgtatgagatatc |
234 |
Q |
| |
|
| ||||||||||| |||||||| || ||||||||||||| ||| |||||||||| ||| ||| ||| |||||| ||| ||||||| |||||||| |
|
|
| T |
8921091 |
ctcttgtttatgatttcatgccaaatggctctcttgatagatatatttcctctagagaagatcacatttccttaacttataagcaaatgtacgagatatc |
8920992 |
T |
|
| Q |
235 |
tcttggagtggctcgtggaattgcttatttgcatcaaggatgtga |
279 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||| ||||| |
|
|
| T |
8920991 |
tcttggagttgcacgtggaattgcttatttgcatcaaggctgtga |
8920947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 36 - 279
Target Start/End: Complemental strand, 8956517 - 8956274
Alignment:
| Q |
36 |
atgggcaagactttattaatgaagttgcaaccataggaagaatacaccatgcaaatgtggttagacttattggtttttgttttgagagatcaaaacgtgc |
135 |
Q |
| |
|
|||| ||||| || ||||||||||||||||||||||||| |||||| || | |||||||| ||||| |||| ||||| ||||| ||||||||||||| |
|
|
| T |
8956517 |
atggacaagatttcattaatgaagttgcaaccataggaaaaatacatcacaccaatgtggtgcgacttgttggattttgcattgagggatcaaaacgtgc |
8956418 |
T |
|
| Q |
136 |
acttgtttatgaattcatgcccaacggctctcttgataaatacatttcctctaaagatgatgttattgatctaacttgcaagaaaatgtatgagatatct |
235 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||| ||| |||||||||| || ||| |||| |||||| ||| ||||||||||||||||| |
|
|
| T |
8956417 |
tcttgtttatgatttcatgcccaatggctctcttgatagatatatttcctctagggaagatcatatttccttaacttataagcaaatgtatgagatatct |
8956318 |
T |
|
| Q |
236 |
cttggagtggctcgtggaattgcttatttgcatcaaggatgtga |
279 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||| ||||| |
|
|
| T |
8956317 |
cttggagttgcacgtggaattgcttatttgcatcaaggttgtga |
8956274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 35 - 279
Target Start/End: Complemental strand, 8932596 - 8932352
Alignment:
| Q |
35 |
aatgggcaagactttattaatgaagttgcaaccataggaagaatacaccatgcaaatgtggttagacttattggtttttgttttgagagatcaaaacgtg |
134 |
Q |
| |
|
||||| ||||| || |||| |||||||||||| ||||||| |||||| || | |||||||| ||||| |||| |||||| |||||| ||||||||||| |
|
|
| T |
8932596 |
aatggacaagatttcattagtgaagttgcaactataggaaaaatacatcacaccaatgtggtgcgacttgttggattttgtgttgagaaatcaaaacgtg |
8932497 |
T |
|
| Q |
135 |
cacttgtttatgaattcatgcccaacggctctcttgataaatacatttcctctaaagatgatgttattgatctaacttgcaagaaaatgtatgagatatc |
234 |
Q |
| |
|
| ||||||||||| ||||||||||| ||||||||||||| ||| |||||||||| ||| || |||| |||||| ||| ||||||| |||||||| |
|
|
| T |
8932496 |
ctcttgtttatgatttcatgcccaatggctctcttgatagatatatttcctctagagaagaccatatttccttaacttataagcaaatgtacgagatatc |
8932397 |
T |
|
| Q |
235 |
tcttggagtggctcgtggaattgcttatttgcatcaaggatgtga |
279 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||| ||||| |
|
|
| T |
8932396 |
tcttggagttgcacgtggaattgcttatttgcatcaaggttgtga |
8932352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 28 - 279
Target Start/End: Complemental strand, 8942519 - 8942268
Alignment:
| Q |
28 |
taagggtaatgggcaagactttattaatgaagttgcaaccataggaagaatacaccatgcaaatgtggttagacttattggtttttgttttgagagatca |
127 |
Q |
| |
|
|||||| ||||||||||| || || |||||||||||||| |||||||||||||| || | |||||||| |||||||||| |||||| ||||| ||||| |
|
|
| T |
8942519 |
taagggaaatgggcaagatttcatcaatgaagttgcaacaataggaagaatacatcacaccaatgtggtgcgacttattggattttgtgttgagggatca |
8942420 |
T |
|
| Q |
128 |
aaacgtgcacttgtttatgaattcatgcccaacggctctcttgataaatacatttcctctaaagatgatgttattgatctaacttgcaagaaaatgtatg |
227 |
Q |
| |
|
||| | || ||||||||||| ||||||||||| ||||||||||||||||| || || |||| ||| ||| |||| |||||| || |||| |||| |
|
|
| T |
8942419 |
aaaagagctcttgtttatgatttcatgcccaatggctctcttgataaatatatatcatctagagaagatcatatttccttaacttataaacaaatatatg |
8942320 |
T |
|
| Q |
228 |
agatatctcttggagtggctcgtggaattgcttatttgcatcaaggatgtga |
279 |
Q |
| |
|
|||||||||||| || || |||||||||||||||||||||||||| ||||| |
|
|
| T |
8942319 |
agatatctcttgccgttgcacgtggaattgcttatttgcatcaaggttgtga |
8942268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 34 - 280
Target Start/End: Original strand, 9453438 - 9453684
Alignment:
| Q |
34 |
taatgggcaagactttattaatgaagttgcaaccataggaagaatacaccatgcaaatgtggttagacttattggtttttgttttgagagatcaaaacgt |
133 |
Q |
| |
|
|||||||||||| || || | |||||||||||||||||| |||||| ||||| |||||||||| ||||| ||||| |||||| | || |||||||||| |
|
|
| T |
9453438 |
taatgggcaagatttcataagtgaagttgcaaccatagggagaatataccattcaaatgtggtaagactcattgggttttgtgtcgaaggatcaaaacgc |
9453537 |
T |
|
| Q |
134 |
gcacttgtttatgaattcatgcccaacggctctcttgataaatacatttcctctaaagatgatgttattgatctaacttgcaagaaaatgtatgagatat |
233 |
Q |
| |
|
|| |||||||| || | ||||||||| ||||| ||||||||||| |||| | ||||| | ||||| ||| ||| | | |||| |||||||||| |
|
|
| T |
9453538 |
gctcttgtttacgagtacatgcccaaaggctcacttgataaatatattttcaacaaagagggagttatatctcttactaacgaccaaatatatgagatat |
9453637 |
T |
|
| Q |
234 |
ctcttggagtggctcgtggaattgcttatttgcatcaaggatgtgat |
280 |
Q |
| |
|
||||||||||||||||||||||| | ||| | |||||||| |||||| |
|
|
| T |
9453638 |
ctcttggagtggctcgtggaatttcatatcttcatcaagggtgtgat |
9453684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 35 - 278
Target Start/End: Original strand, 9485804 - 9486047
Alignment:
| Q |
35 |
aatgggcaagactttattaatgaagttgcaaccataggaagaatacaccatgcaaatgtggttagacttattggtttttgttttgagagatcaaaacgtg |
134 |
Q |
| |
|
||||||||||| || || | |||||||||||| |||||||||||| | ||| |||||||||| ||||| ||||| |||||| | || |||| ||||||| |
|
|
| T |
9485804 |
aatgggcaagatttcataagtgaagttgcaactataggaagaatatatcattcaaatgtggtaagactcattgggttttgtgtcgaaggatcgaaacgtg |
9485903 |
T |
|
| Q |
135 |
cacttgtttatgaattcatgcccaacggctctcttgataaatacatttcctctaaagatgatgttattgatctaacttgcaagaaaatgtatgagatatc |
234 |
Q |
| |
|
| |||||||| || | ||||||||| ||||| ||||||||||| |||| | ||||| | ||||| ||||||| | | |||| ||||||||||| |
|
|
| T |
9485904 |
ctcttgtttacgagtacatgcccaatggctcacttgataaatatattttcaacaaagagggagttatatctctaactaacgaccaaatatatgagatatc |
9486003 |
T |
|
| Q |
235 |
tcttggagtggctcgtggaattgcttatttgcatcaaggatgtg |
278 |
Q |
| |
|
|||||||||||||||||||||| | ||| | |||||||| |||| |
|
|
| T |
9486004 |
tcttggagtggctcgtggaatttcatatcttcatcaaggctgtg |
9486047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 9104572 - 9104747
Alignment:
| Q |
1 |
tgtggccataaagatgttgggtaactctaagggtaatgggcaagactttattaatgaagttgcaaccataggaagaatacaccatgcaaatgtggttaga |
100 |
Q |
| |
|
|||||| || |||||||||||||| || || |||||||| ||||||||||||| |||||| |||||||| ||||| ||||| ||| ||||| || | | |
|
|
| T |
9104572 |
tgtggcaatcaagatgttgggtaagtcgaaaggtaatggacaagactttattagtgaagtagcaaccattggaaggatacatcatttgaatgtagt-aca |
9104670 |
T |
|
| Q |
101 |
cttatt-ggtttttgttttgagagatcaaaacgtgcacttgtttatgaattcatgcccaacggctctcttgataaat |
176 |
Q |
| |
|
||||| || |||||| ||||| ||||||||||||| |||||||||||||||||||| || || ||||||||||||| |
|
|
| T |
9104671 |
attatttggattttgtattgagggatcaaaacgtgctcttgtttatgaattcatgcctaatggatctcttgataaat |
9104747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 8965041 - 8964850
Alignment:
| Q |
1 |
tgtggccataaagatgttgggtaactctaagggtaatgggcaagactttattaatgaagttgcaaccataggaagaatacaccatgcaaatgtggttaga |
100 |
Q |
| |
|
|||||| || |||||||| ||||| || || ||||||||||| ||||||||||||||||| |||||||| ||||| ||||| ||| |||||||| | |
|
|
| T |
8965041 |
tgtggcaatcaagatgttaggtaaatcaaaaggtaatgggcaggactttattaatgaagtagcaaccattggaaggatacatcatttgaatgtggtgcaa |
8964942 |
T |
|
| Q |
101 |
cttattggtttttgttttgagagatcaaaacgtgcacttgtttatgaattcatgcccaacggctctcttgataaatacatttcctctaaaga |
192 |
Q |
| |
|
| |||||||||||| | ||| ||||||| ||||| |||||||||||||||||| | || || || |||||||||| |||| ||||||||| |
|
|
| T |
8964941 |
ttaattggtttttgtgtcgagggatcaaaccgtgctcttgtttatgaattcatgtctaatggatcccttgataaatttattttctctaaaga |
8964850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 9057090 - 9056899
Alignment:
| Q |
1 |
tgtggccataaagatgttgggtaactctaagggtaatgggcaagactttattaatgaagttgcaaccataggaagaatacaccatgcaaatgtggttaga |
100 |
Q |
| |
|
|||||| |||||||||||||| || || || |||||||||||||||||||| |||||||| |||| || ||||||||||| ||| |||||||||| | |
|
|
| T |
9057090 |
tgtggcaataaagatgttgggcaagtccaaaggtaatgggcaagactttatcaatgaagtcacaactattggaagaatacatcatttaaatgtggttcaa |
9056991 |
T |
|
| Q |
101 |
cttattggtttttgttttgagagatcaaaacgtgcacttgtttatgaattcatgcccaacggctctcttgataaatacatttcctctaaaga |
192 |
Q |
| |
|
| |||| ||||| ||||| | |||||||| || |||||||||||||| |||| || || |||||||||||||| |||| ||||||||| |
|
|
| T |
9056990 |
ttacttggattttgcattgaggggtcaaaacgagctcttgtttatgaatttatgcgtaatggatctcttgataaatatattttctctaaaga |
9056899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 9082120 - 9082311
Alignment:
| Q |
1 |
tgtggccataaagatgttgggtaactctaagggtaatgggcaagactttattaatgaagttgcaaccataggaagaatacaccatgcaaatgtggttaga |
100 |
Q |
| |
|
|||||| || |||||||||||||| || || |||||||||||||||||||| |||||||| |||| || ||||||||||| ||| ||||| | || | |
|
|
| T |
9082120 |
tgtggcaatcaagatgttgggtaagtcaaaaggtaatgggcaagactttatcaatgaagtcacaactattggaagaatacatcatttgaatgttg-taca |
9082218 |
T |
|
| Q |
101 |
ctta-ttggtttttgttttgagagatcaaaacgtgcacttgtttatgaattcatgcccaacggctctcttgataaatacatttcctctaaaga |
192 |
Q |
| |
|
||| |||| ||||| ||||| |||| |||||||| |||||||||||||||||||| || || ||||||||||||| |||| ||||||||| |
|
|
| T |
9082219 |
attacttggattttgcattgagggatccaaacgtgctcttgtttatgaattcatgcctaatggatctcttgataaatttattttctctaaaga |
9082311 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 9000192 - 9000001
Alignment:
| Q |
1 |
tgtggccataaagatgttgggtaactctaagggtaatgggcaagactttattaatgaagttgcaaccataggaagaatacaccatgcaaatgtggttaga |
100 |
Q |
| |
|
|||||| ||||||||||||||||| || || ||||||||| |||| ||||||| |||||| ||||||| ||||||||| | ||| |||||||| || |
|
|
| T |
9000192 |
tgtggcaataaagatgttgggtaaatcgaaaggtaatgggaaagattttattagtgaagtctcaaccatcggaagaatatatcatttgaatgtggtacga |
9000093 |
T |
|
| Q |
101 |
cttattggtttttgttttgagagatcaaaacgtgcacttgtttatgaattcatgcccaacggctctcttgataaatacatttcctctaaaga |
192 |
Q |
| |
|
| |||| |||||| | ||| |||| |||||||| |||||||||||||||||||| || || || |||||||||| |||| ||||||||| |
|
|
| T |
9000092 |
ttacttggattttgtatcgagggatcgaaacgtgctcttgtttatgaattcatgcctaatggatcacttgataaatttattttctctaaaga |
9000001 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 9096390 - 9096565
Alignment:
| Q |
1 |
tgtggccataaagatgttgggtaactctaagggtaatgggcaagactttattaatgaagttgcaaccataggaagaatacaccatgcaaatgtggttaga |
100 |
Q |
| |
|
|||||| || ||| |||||||||| || || |||||||||||||| ||||| |||||||| |||| || ||||||||||| ||| ||||| || | | |
|
|
| T |
9096390 |
tgtggcaatcaagttgttgggtaattcaaaaggtaatgggcaagattttataaatgaagtcacaactattggaagaatacatcatttgaatgtagt-aca |
9096488 |
T |
|
| Q |
101 |
cttatt-ggtttttgttttgagagatcaaaacgtgcacttgtttatgaattcatgcccaacggctctcttgataaat |
176 |
Q |
| |
|
||||| || |||||| ||||| ||||||||||||| |||||||||||||||||||| || || ||||||||||||| |
|
|
| T |
9096489 |
attatttggattttgtattgagggatcaaaacgtgctcttgtttatgaattcatgcctaatggatctcttgataaat |
9096565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 34 - 256
Target Start/End: Original strand, 9432451 - 9432673
Alignment:
| Q |
34 |
taatgggcaagactttattaatgaagttgcaaccataggaagaatacaccatgcaaatgtggttagacttattggtttttgttttgagagatcaaaacgt |
133 |
Q |
| |
|
|||||| ||||| || || | |||||||||||||||||| |||||| ||||| |||||||||| ||||| |||| |||||| | || |||||||||| |
|
|
| T |
9432451 |
taatggccaagatttcataagtgaagttgcaaccatagggagaatataccattcaaatgtggtaagactcgttgggttttgtgtcgaaggatcaaaacgc |
9432550 |
T |
|
| Q |
134 |
gcacttgtttatgaattcatgcccaacggctctcttgataaatacatttcctctaaagatgatgttattgatctaacttgcaagaaaatgtatgagatat |
233 |
Q |
| |
|
|| |||||||| || | ||||||||| ||||| ||||||||||| |||| | ||||| | ||||| |||| || | | |||| |||||||||| |
|
|
| T |
9432551 |
gctcttgtttacgagtacatgcccaatggctcacttgataaatatattttcaacaaagagggagttatatctctatctaacgaccaaatatatgagatat |
9432650 |
T |
|
| Q |
234 |
ctcttggagtggctcgtggaatt |
256 |
Q |
| |
|
||||||||||||||| ||||||| |
|
|
| T |
9432651 |
ctcttggagtggctcttggaatt |
9432673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #18
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 35 - 248
Target Start/End: Complemental strand, 9400127 - 9399914
Alignment:
| Q |
35 |
aatgggcaagactttattaatgaagttgcaaccataggaagaatacaccatgcaaatgtggttagacttattggtttttgttttgagagatcaaaacgtg |
134 |
Q |
| |
|
||||||||||| || || | |||||||||||| |||||||||||| ||||| |||||||||| ||||| || || |||||| | || |||| ||||| | |
|
|
| T |
9400127 |
aatgggcaagatttcataagtgaagttgcaactataggaagaatataccattcaaatgtggtaagactcatagggttttgtgtcgaaggatcgaaacgag |
9400028 |
T |
|
| Q |
135 |
cacttgtttatgaattcatgcccaacggctctcttgataaatacatttcctctaaagatgatgttattgatctaacttgcaagaaaatgtatgagatatc |
234 |
Q |
| |
|
| |||||||| || | ||||||||| ||||| ||||||||||| |||| | ||||| | ||||| ||||||| | | |||| ||||||||||| |
|
|
| T |
9400027 |
ctcttgtttacgagtacatgcccaatggctcacttgataaatatattttcaacaaagagggagttatatctctaactaacgaccaaatatatgagatatc |
9399928 |
T |
|
| Q |
235 |
tcttggagtggctc |
248 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
9399927 |
tcttggagtggctc |
9399914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #19
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 9142452 - 9142627
Alignment:
| Q |
1 |
tgtggccataaagatgttgggtaactctaagggtaatgggcaagactttattaatgaagttgcaaccataggaagaatacaccatgcaaatgtggttaga |
100 |
Q |
| |
|
|||||| || |||||| ||||||| || || |||||||||||||| ||||||| ||||||| ||||| ||||||||||| |||| |||||||| | | |
|
|
| T |
9142452 |
tgtggcaatcaagatgctgggtaagtcaaaaggtaatgggcaagattttattagtgaagttatgaccatcggaagaatacatcatgtgaatgtggtgaaa |
9142551 |
T |
|
| Q |
101 |
cttattggtttttgttttgagagatcaaaacgtgcacttgtttatgaattcatgcccaacggctctcttgataaat |
176 |
Q |
| |
|
| | || |||||| ||||| |||||||||| || ||| |||||||||||||| | || || ||||||||||||| |
|
|
| T |
9142552 |
ttactaggattttgtattgagggatcaaaacgcgctcttatttatgaattcatgtcaaatggatctcttgataaat |
9142627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 182
Target Start/End: Complemental strand, 9464595 - 9464466
Alignment:
| Q |
53 |
aatgaagttgcaaccataggaagaatacaccatgcaaatgtggttagacttattggtttttgttttgagagatcaaaacgtgcacttgtttatgaattca |
152 |
Q |
| |
|
||||||||||| ||||| |||| || ||||||| ||||||||| || ||||| |||||| |||||| | ||||| | |||||||||||||| |||| |
|
|
| T |
9464595 |
aatgaagttgctaccattggaacgattcaccatgttaatgtggttcacctaattggcttttgtgttgagaaaacaaaaagagcacttgtttatgagttca |
9464496 |
T |
|
| Q |
153 |
tgcccaacggctctcttgataaatacattt |
182 |
Q |
| |
|
|||| |||| |||||||| ||| |||||| |
|
|
| T |
9464495 |
tgcctaacgattctcttgaaaaacacattt |
9464466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 8873649 - 8873804
Alignment:
| Q |
1 |
tgtggccataaagatgttgggtaactctaagggtaatgggcaagactttattaatgaagttgcaaccataggaagaatacaccatgcaaatgtggttaga |
100 |
Q |
| |
|
|||||| || |||||||||||||| || || ||||| |||| ||||||||| | |||||| |||||||| || |||||||| ||| |||||||| | |
|
|
| T |
8873649 |
tgtggcaatcaagatgttgggtaaatcaaaaggtaacgggcgagactttataagtgaagtagcaaccattgggagaatacatcatttgaatgtggtgcaa |
8873748 |
T |
|
| Q |
101 |
cttattggtttttgttttgagagatcaaaacgtgcacttgtttatgaattcatgcc |
156 |
Q |
| |
|
| ||||| ||||| ||| ||||||||||||| ||||||||||| || ||||| |
|
|
| T |
8873749 |
ttaattggattttgcaccgagggatcaaaacgtgctcttgtttatgagtttatgcc |
8873804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 86
Target Start/End: Complemental strand, 9384721 - 9384669
Alignment:
| Q |
34 |
taatgggcaagactttattaatgaagttgcaaccataggaagaatacaccatg |
86 |
Q |
| |
|
|||||| ||||| |||||||| |||||||| ||||| ||||||||||| |||| |
|
|
| T |
9384721 |
taatggacaagattttattaacgaagttgcgaccattggaagaatacatcatg |
9384669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 5 - 279
Target Start/End: Complemental strand, 9160117 - 9159843
Alignment:
| Q |
5 |
gccataaagatgttgggtaactctaagggtaatgggcaagactttattaatgaagttgcaaccataggaagaatacaccatgcaaatgtggttagactta |
104 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||| || |||| ||| |||||||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
9160117 |
gccataaagatgttgggtaagtctaagggtaatggacaagatttcattagtgaggttgcaactataggaagaatacaccatgcaaatgtggtaagactta |
9160018 |
T |
|
| Q |
105 |
ttggtttttgttttgagagatcaaaacgtgcacttgtttatgaattcatgcccaacggctctcttgataaatacatttcctctaaagatgatgttattga |
204 |
Q |
| |
|
|||| |||||| | |||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
9160017 |
ttggattttgtgtggagagatcaaaatgtactcttgtttatgaattcatgcccaacggctctcttgataaatacatttcctctaaagatgatgttattaa |
9159918 |
T |
|
| Q |
205 |
tctaacttgcaagaaaatgtatgagatatctcttggagtggctcgtggaattgcttatttgcatcaaggatgtga |
279 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9159917 |
tctaacttataagaaaatgtatgagatatctattggagtggctcgtggaattgcttatttgcatcaaggatgtga |
9159843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 15926777 - 15927053
Alignment:
| Q |
1 |
tgtggccataaagatgttgggtaactctaagggtaatgggcaagactttattaatgaagttgcaaccataggaagaatacaccatgcaaatgtggttaga |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||| | ||||| ||||| |||||||||||||| |||||||||||||||||||| || | ||||| ||| || |
|
|
| T |
15926777 |
tgtggccataaagatgttgggtaaatctaagagcaatggacaagattttattaatgaagtggcaaccataggaagaatacatcacaccaatgtagttcga |
15926876 |
T |
|
| Q |
101 |
cttattggtttttgttttgagagatcaaaacgtgcacttgtttatgaattcatgcccaacggctctcttgataaatacatttcctctaaagatgatgtta |
200 |
Q |
| |
|
|||||||| |||||| ||||| ||||||| ||||| ||||||||||||||||||||||| || |||||||||||||| ||||| |||| || |||| || |
|
|
| T |
15926877 |
cttattggattttgtgttgagggatcaaagcgtgctcttgtttatgaattcatgcccaatggttctcttgataaatatatttcttctagcgaggatgcta |
15926976 |
T |
|
| Q |
201 |
ttgatctaacttgcaagaaaatgtatgagatatctcttggagtggctcgtggaattgcttatttgcatcaaggatgt |
277 |
Q |
| |
|
| |||||||| ||| ||||||||||||||||||||||||| |||||||| || ||||| || |||||||||||| |
|
|
| T |
15926977 |
tctctctaacttataagcaaatgtatgagatatctcttggagttgctcgtggtatggcttacttacatcaaggatgt |
15927053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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